Hi Atena

what were you hoping would be in the fifth column? What are you hoping to
create your own annotation files from? Can you give us a bigger picture of
what you are trying to achieve?

cheers
Bruce


On Wed, 6 Mar 2019, Atena Rezaei
wrote:

>
>         External Email - Use Caution        
>
> Hi Bruce,
>
> Thanks for your comment!
> I used mri_annotation2label to existed lh.aparc.annot file in label folder
> and got the labels. but the labels' text file contain 0 in fifth column.
> I need to create atlas from my own data  including surface parcellation. how
> can I do that? I found commands;
> mris_ca_train and mris_ca_label,
> how can I make the annotation files from my own data?
>
> BR,
> Atena
>
> On Wed, Mar 6, 2019 at 1:10 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> wrote:
>       Hi Atena
>
>       yes, mri_annotation2label should work, although it really
>       depends on what
>       you want to do next
>
>       cheers
>       Bruce
>       On Wed, 6 Mar 2019, Atena Rezaei wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Hello,
>       >
>       > I am trying to extract the cortical parcellation(atlas) file
>       from freesurfer with all the labels. I found
>       > the lh.aparc.annot file in label folder. Should I use
>       mri_annotation2label to create labels? or how can I
>       > extract the whole file?
>       > Thanks for ur help!
>       >
>       > BR,
>       > Atena
>       >
>       >
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