Dear all,<div><br></div><div>I&#39;m trying to pass the following flags for mri_normalize through -expert flag in recon-all, with a file, named expert.opts with the following single line:</div><div>mri_normalize -b 20 -n 5</div>
<div><br></div><div>my command line is:</div><div><br></div><div>recon-all -i inputfile -subject subname -all -expert &lt;pathname&gt;/expert.opts</div><div><br></div><div>I receive the following error:</div><div><br></div>
<div>cp: cannot create regular file: &#39;/home/dir/subject/subname/scripts/expert-options&#39;</div><div><br></div><div>The directory of the subject has been created, but it is completely empty. At first glance I thought it might be some sort of permission problems, however I have rwx permission for all the paths (even running under the root username the same error comes up). Secondly, I checked my disk quota, it is completely fine. Please note that, if I do not pass -expert flag recon-all works completely fine. </div>
<div><br></div><div>Any input is much appreciated. </div><div><br></div><div>Regards,</div><div>James</div>