Hi John,

Which version of FreeSurfer are you running?


Emma


---------

Emma Boyd

Research Technician II

Laboratory for Computational Neuroimaging

Martinos Center for Biomedical Imaging

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Anderson <John.anderso@protonmail.com>
Sent: Thursday, August 31, 2017 12:17 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
 
Dear experts,
looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Is this atlas can be generated with the presence of FLAIR images.

When i run recon-all without FLAIR or T2 I don't see this atlas!! Is this atlas FLAIR -based?

thank you for any clarification
John

-------- Original Message --------
Subject: aparc.DKTatlas+aseg.mgz
Local Time: August 30, 2017 7:49 PM
UTC Time: August 30, 2017 11:49 PM
From: John.anderso@protonmail.com
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>

Dear experts,
looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles
I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Do I need FLAIR images to get this file.

I ran the command recon-all --s subj --all and I can';t find this file


thank you for any clarification
John