Sun May 12 15:02:29 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 804M wired, 5123M active, 591M inactive, 6518M used, 5754M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/12-20:02:31-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/12-20:02:31-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/12-20:02:31-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/12-20:02:31-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/12-20:02:31-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 803M wired, 5128M active, 606M inactive, 6536M used, 5735M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Sun May 12 15:02:34 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Sun May 12 15:05:47 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Sun May 12 15:06:39 CDT 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /usr/local/freesurfer5.1 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister --dof 6 Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat.fslregister.log Sun May 12 15:06:40 CDT 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister --dof 6 $Id: fslregister,v 1.29.2.1 2010/08/04 15:50:56 nicks Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii... /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/reg0.31542.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/reg0.31542.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Sun May 12 15:06:47 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/fslregister/movvol.fslregister.nii -bins 256 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat.fsl.mat -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -schedule /usr/local/freesurfer5.1/bin/flirt.newdefault.20080811.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat.fsl.mat0 tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl ---- FSL registration matrix -------- 0.998 -0.057 0.004 5.868; 0.004 -0.002 -1.000 177.520; 0.057 0.998 -0.002 -10.385; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Started at Sun May 12 15:06:40 CDT 2013 Ended at Sun May 12 15:07:21 CDT 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1368400140 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.052920 1 -25.0 -25.0 25.0 1.075045 2 -25.0 25.0 -25.0 1.065947 3 -25.0 25.0 25.0 1.051200 4 25.0 -25.0 -25.0 1.055070 5 25.0 -25.0 25.0 1.037468 6 25.0 25.0 -25.0 1.060834 7 25.0 25.0 25.0 1.037068 REL: 8 1.004362 8.435552 1.054444 rel = 0.952504 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9940 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.9525 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9809 0.9809 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9767 0.9767 0.0 8 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.9704 0.9704 0.0 14 -4.0000 -4.0000 -4.0000 0.0000 0.0000 4.0000 0.9684 0.9684 0.0 16 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.9656 0.9656 0.0 25 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.0000 0.9448 0.9448 0.0 36 -4.0000 -4.0000 0.0000 0.0000 -4.0000 -4.0000 0.9370 0.9370 0.0 45 -4.0000 -4.0000 0.0000 4.0000 -4.0000 -4.0000 0.8832 0.8832 0.0 48 -4.0000 -4.0000 0.0000 4.0000 0.0000 -4.0000 0.8771 0.8771 0.0 63 -4.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.7775 0.7775 0.0 289 0.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7464 0.7464 0.0 306 0.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.6717 0.6717 0.0 307 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.0000 0.5694 0.5694 0.0 316 0.0000 -4.0000 4.0000 4.0000 -4.0000 0.0000 0.5252 0.5252 0.0 Brute Force -------------------------- Min cost was 0.525227 Number of iterations 729 Search time 2.395000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 4.000 4.000 -4.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 4 3 4 4 -4 5 0 2 1.000 -4.000 4.000 4.000 -4.000 0.000 0.5106599540 5 1.618 -4.000 4.000 4.000 -4.000 0.000 0.5105962093 7 1.310 -4.000 4.000 4.000 -4.000 0.000 0.5055248328 8 1.311 -4.000 4.000 4.000 -4.000 0.000 0.5055217160 9 1.335 -4.000 4.000 4.000 -4.000 0.000 0.5055208971 11 1.323 -4.000 4.000 4.000 -4.000 0.000 0.5054959814 20 1.323 -4.230 4.000 4.000 -4.000 0.000 0.5043035939 23 1.323 -4.256 4.000 4.000 -4.000 0.000 0.5041775435 24 1.323 -4.302 4.000 4.000 -4.000 0.000 0.5041090080 25 1.323 -4.294 4.000 4.000 -4.000 0.000 0.5040975435 26 1.323 -4.289 4.000 4.000 -4.000 0.000 0.5040963378 27 1.323 -4.290 4.000 4.000 -4.000 0.000 0.5040961064 33 1.323 -4.290 3.382 4.000 -4.000 0.000 0.5027754155 35 1.323 -4.290 3.558 4.000 -4.000 0.000 0.5014410566 36 1.323 -4.290 3.642 4.000 -4.000 0.000 0.5013800266 37 1.323 -4.290 3.614 4.000 -4.000 0.000 0.5011792103 38 1.323 -4.290 3.603 4.000 -4.000 0.000 0.5011125442 39 1.323 -4.290 3.586 4.000 -4.000 0.000 0.5010944026 40 1.323 -4.290 3.591 4.000 -4.000 0.000 0.5010827992 45 1.323 -4.290 3.591 2.382 -4.000 0.000 0.4468564334 51 1.323 -4.290 3.591 2.467 -4.000 0.000 0.4460581859 66 1.323 -4.290 3.591 2.467 -3.901 0.000 0.4433114088 67 1.323 -4.290 3.591 2.467 -3.846 0.000 0.4428472942 69 1.323 -4.290 3.591 2.467 -3.854 0.000 0.4428285515 70 1.323 -4.290 3.591 2.467 -3.856 0.000 0.4428283343 72 1.323 -4.290 3.591 2.467 -3.855 0.000 0.4428281112 74 1.323 -4.290 3.591 2.467 -3.855 1.000 0.4338664518 79 1.323 -4.290 3.591 2.467 -3.855 0.861 0.4314703072 80 1.323 -4.290 3.591 2.467 -3.855 0.829 0.4311998994 82 1.323 -4.290 3.591 2.467 -3.855 0.816 0.4311541398 84 1.323 -4.290 3.591 2.467 -3.855 0.811 0.4311505471 85 1.323 -4.290 3.591 2.467 -3.855 0.810 0.4311505176 96 1.328 -4.290 3.591 2.467 -3.855 0.810 0.4311413456 103 1.328 -4.909 3.591 2.467 -3.855 0.810 0.4255613128 107 1.328 -4.818 3.591 2.467 -3.855 0.810 0.4250163992 110 1.328 -4.801 3.591 2.467 -3.855 0.810 0.4249050064 112 1.328 -4.795 3.591 2.467 -3.855 0.810 0.4248932537 113 1.328 -4.794 3.591 2.467 -3.855 0.810 0.4248931137 121 1.328 -4.794 3.668 2.467 -3.855 0.810 0.4240501760 122 1.328 -4.794 3.719 2.467 -3.855 0.810 0.4239609824 123 1.328 -4.794 3.705 2.467 -3.855 0.810 0.4239167432 125 1.328 -4.794 3.704 2.467 -3.855 0.810 0.4239166761 131 1.328 -4.794 3.704 1.849 -3.855 0.810 0.4214001098 133 1.328 -4.794 3.704 2.115 -3.855 0.810 0.4183284348 136 1.328 -4.794 3.704 2.120 -3.855 0.810 0.4183284069 137 1.328 -4.794 3.704 2.118 -3.855 0.810 0.4183273988 148 1.328 -4.794 3.704 2.118 -3.863 0.810 0.4182968373 149 1.328 -4.794 3.704 2.118 -3.870 0.810 0.4182956917 150 1.328 -4.794 3.704 2.118 -3.867 0.810 0.4182924243 161 1.328 -4.794 3.704 2.118 -3.867 0.848 0.4176188230 162 1.328 -4.794 3.704 2.118 -3.867 0.872 0.4174929360 164 1.328 -4.794 3.704 2.118 -3.867 0.870 0.4174923796 166 1.334 -5.297 3.817 1.768 -3.879 0.930 0.4076763915 174 1.332 -5.161 3.787 1.862 -3.875 0.914 0.4076376271 176 1.333 -5.228 3.802 1.816 -3.877 0.921 0.4068616793 177 1.333 -5.228 3.802 1.815 -3.877 0.922 0.4068615018 178 1.333 -5.229 3.802 1.815 -3.877 0.922 0.4068609495 182 1.333 -5.231 3.802 1.814 -3.877 0.922 0.4068608341 184 1.333 -5.230 3.802 1.814 -3.877 0.922 0.4068606392 191 1.152 -5.230 3.802 1.814 -3.877 0.922 0.4040879591 193 1.166 -5.230 3.802 1.814 -3.877 0.922 0.4040837921 195 1.160 -5.230 3.802 1.814 -3.877 0.922 0.4040776908 204 1.160 -5.230 3.802 1.814 -3.877 0.753 0.4027047936 206 1.160 -5.230 3.802 1.814 -3.877 0.800 0.4021350428 207 1.160 -5.230 3.802 1.814 -3.877 0.846 0.4021235860 208 1.160 -5.230 3.802 1.814 -3.877 0.824 0.4020115709 217 1.160 -5.230 3.736 1.814 -3.877 0.824 0.4016903656 219 1.160 -5.230 3.742 1.814 -3.877 0.824 0.4016702053 220 1.160 -5.230 3.765 1.814 -3.877 0.824 0.4016541939 221 1.160 -5.230 3.757 1.814 -3.877 0.824 0.4016496646 222 1.160 -5.230 3.758 1.814 -3.877 0.824 0.4016493991 230 1.160 -5.230 3.758 1.784 -3.877 0.824 0.4013536998 231 1.160 -5.230 3.758 1.718 -3.877 0.824 0.4013451311 233 1.160 -5.230 3.758 1.751 -3.877 0.824 0.4011763944 235 1.160 -5.230 3.758 1.747 -3.877 0.824 0.4011757592 238 1.160 -5.230 3.758 1.748 -3.877 0.824 0.4011749680 246 1.160 -5.230 3.758 1.748 -3.797 0.824 0.3999262769 248 1.160 -5.230 3.758 1.748 -3.793 0.824 0.3999149204 249 1.160 -5.230 3.758 1.748 -3.789 0.824 0.3999105726 257 1.162 -5.422 3.801 1.615 -3.793 0.847 0.3995070957 258 1.161 -5.341 3.783 1.671 -3.791 0.837 0.3994970308 259 1.162 -5.379 3.791 1.645 -3.792 0.841 0.3994073599 260 1.162 -5.381 3.792 1.644 -3.792 0.842 0.3994051580 261 1.162 -5.396 3.795 1.633 -3.793 0.844 0.3994029631 263 1.162 -5.390 3.794 1.638 -3.793 0.843 0.3994004335 275 1.122 -5.390 3.794 1.638 -3.793 0.843 0.3981968361 276 1.083 -5.390 3.794 1.638 -3.793 0.843 0.3975199589 279 1.082 -5.390 3.794 1.638 -3.793 0.843 0.3975185301 287 1.082 -5.390 3.794 1.638 -3.793 0.722 0.3959918015 290 1.082 -5.390 3.794 1.638 -3.793 0.724 0.3959917683 298 1.082 -5.390 3.708 1.638 -3.793 0.724 0.3951121417 299 1.082 -5.390 3.645 1.638 -3.793 0.724 0.3950914672 305 1.082 -5.390 3.635 1.638 -3.793 0.724 0.3950892525 306 1.082 -5.390 3.638 1.638 -3.793 0.724 0.3950870637 307 1.082 -5.390 3.639 1.638 -3.793 0.724 0.3950870013 317 1.082 -5.390 3.639 1.634 -3.793 0.724 0.3950829083 318 1.082 -5.390 3.639 1.632 -3.793 0.724 0.3950823597 326 1.082 -5.390 3.639 1.632 -3.633 0.724 0.3909688871 330 1.082 -5.390 3.639 1.632 -3.632 0.724 0.3909688275 338 1.084 -5.582 3.682 1.499 -3.636 0.746 0.3907930937 339 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901962422 340 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901929019 341 1.083 -5.514 3.667 1.546 -3.635 0.738 0.3900474551 342 1.083 -5.540 3.673 1.528 -3.636 0.741 0.3900158474 343 1.083 -5.533 3.671 1.533 -3.635 0.741 0.3899890777 344 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899870352 345 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899867231 354 0.897 -5.530 3.670 1.535 -3.635 0.740 0.3893905885 355 0.966 -5.530 3.670 1.535 -3.635 0.740 0.3885125243 356 0.979 -5.530 3.670 1.535 -3.635 0.740 0.3884778139 357 0.984 -5.530 3.670 1.535 -3.635 0.740 0.3884597016 359 0.999 -5.530 3.670 1.535 -3.635 0.740 0.3884312519 361 1.000 -5.530 3.670 1.535 -3.635 0.740 0.3884308719 369 1.000 -5.530 3.670 1.535 -3.635 0.613 0.3859645524 371 1.000 -5.530 3.670 1.535 -3.635 0.645 0.3854689898 373 1.000 -5.530 3.670 1.535 -3.635 0.644 0.3854689500 381 1.000 -5.530 3.669 1.535 -3.635 0.644 0.3854570276 383 1.000 -5.530 3.639 1.535 -3.635 0.644 0.3852312564 385 1.000 -5.530 3.633 1.535 -3.635 0.644 0.3852157104 386 1.000 -5.530 3.630 1.535 -3.635 0.644 0.3852130412 387 1.000 -5.530 3.629 1.535 -3.635 0.644 0.3852128318 397 1.000 -5.530 3.629 1.546 -3.635 0.644 0.3851704032 399 1.000 -5.530 3.629 1.547 -3.635 0.644 0.3851697145 411 1.000 -5.530 3.629 1.547 -3.623 0.644 0.3851066343 421 0.999 -5.514 3.625 1.559 -3.623 0.642 0.3850790925 422 0.999 -5.515 3.626 1.557 -3.623 0.642 0.3850775991 423 0.999 -5.517 3.626 1.556 -3.623 0.643 0.3850767121 424 0.999 -5.518 3.626 1.556 -3.623 0.643 0.3850762962 427 0.999 -5.519 3.626 1.555 -3.623 0.643 0.3850762474 436 0.977 -5.515 3.614 1.561 -3.619 0.616 0.3847268755 437 0.967 -5.514 3.609 1.563 -3.618 0.605 0.3847038554 438 0.969 -5.514 3.610 1.563 -3.618 0.607 0.3847033048 439 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847030254 440 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847029014 452 0.931 -5.514 3.610 1.563 -3.618 0.607 0.3844474694 453 0.936 -5.514 3.610 1.563 -3.618 0.607 0.3844016973 454 0.943 -5.514 3.610 1.563 -3.618 0.607 0.3843628983 456 0.944 -5.514 3.610 1.563 -3.618 0.607 0.3843615000 457 0.945 -5.514 3.610 1.563 -3.618 0.607 0.3843614069 467 0.945 -5.521 3.611 1.558 -3.618 0.607 0.3843290456 470 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843112069 471 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843111615 472 0.945 -5.531 3.614 1.551 -3.618 0.609 0.3843109887 484 0.945 -5.531 3.627 1.551 -3.618 0.609 0.3842697066 486 0.945 -5.531 3.626 1.551 -3.618 0.609 0.3842689984 487 0.945 -5.531 3.625 1.551 -3.618 0.609 0.3842689165 497 0.945 -5.531 3.625 1.556 -3.618 0.609 0.3842677711 498 0.945 -5.531 3.625 1.554 -3.618 0.609 0.3842664342 507 0.945 -5.531 3.625 1.554 -3.586 0.609 0.3839528557 509 0.945 -5.531 3.625 1.554 -3.588 0.609 0.3839440941 510 0.945 -5.531 3.625 1.554 -3.591 0.609 0.3839416583 519 0.936 -5.530 3.620 1.557 -3.589 0.598 0.3839312125 520 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839291804 521 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839290531 535 0.920 -5.530 3.621 1.556 -3.590 0.601 0.3838190626 537 0.924 -5.530 3.621 1.556 -3.590 0.601 0.3838120151 549 0.924 -5.529 3.621 1.557 -3.590 0.601 0.3838119734 561 0.924 -5.529 3.631 1.557 -3.590 0.601 0.3837873452 580 0.924 -5.529 3.631 1.557 -3.572 0.601 0.3836780501 591 0.921 -5.528 3.630 1.557 -3.572 0.598 0.3836757641 592 0.921 -5.528 3.630 1.557 -3.572 0.597 0.3836755656 597 0.903 -5.527 3.638 1.559 -3.554 0.594 0.3835845407 604 0.895 -5.526 3.642 1.560 -3.546 0.592 0.3835794654 605 0.896 -5.526 3.641 1.560 -3.547 0.592 0.3835790712 606 0.897 -5.526 3.641 1.560 -3.548 0.593 0.3835789605 638 0.897 -5.510 3.638 1.571 -3.547 0.591 0.3835787626 639 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835746439 640 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835745538 642 0.897 -5.519 3.640 1.564 -3.548 0.593 0.3835743974 643 0.897 -5.520 3.640 1.564 -3.548 0.593 0.3835743327 651 0.897 -5.520 3.639 1.564 -3.548 0.593 0.3835741199 652 0.897 -5.520 3.638 1.564 -3.548 0.593 0.3835739882 654 0.897 -5.520 3.636 1.564 -3.548 0.593 0.3835739332 664 0.897 -5.520 3.636 1.563 -3.548 0.593 0.3835739007 674 0.897 -5.520 3.636 1.563 -3.547 0.593 0.3835737421 681 0.891 -5.519 3.639 1.564 -3.540 0.591 0.3835719195 682 0.893 -5.519 3.638 1.563 -3.542 0.592 0.3835711657 692 0.894 -5.519 3.638 1.563 -3.543 0.592 0.3835711591 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 1.013153 1 -25.0 -25.0 25.0 1.058806 2 -25.0 25.0 -25.0 1.045570 3 -25.0 25.0 25.0 1.063901 4 25.0 -25.0 -25.0 1.063232 5 25.0 -25.0 25.0 1.062666 6 25.0 25.0 -25.0 1.063291 7 25.0 25.0 25.0 1.068569 REL: 8 0.383571 8.439189 1.054899 rel = 0.36361 Number of iterations 7 Min cost was 0.383571 Number of FunctionCalls 693 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 2.095000 sec Parameters at optimum (transmm) 0.89362 -5.51934 3.63786 Parameters at optimum (rotdeg) 1.56335 -3.54278 0.59184 Costs at optimum 2281 0.6628 0.2750 31.6000 0.8341 0.3142 22.0390 0.3836 Reg at min cost was 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat, type = 14 Original Reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.002 -0.062 0.012 -1.224; -0.012 -0.027 0.000 5.439; -0.062 0.001 -0.027 -3.268; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 7.081879 Computing change in rh position Surface RMS Diff (mm) 7.652021 10.099015 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.31498/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1369257380 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.017659 1 -25.0 -25.0 25.0 1.065419 2 -25.0 25.0 -25.0 1.016386 3 -25.0 25.0 25.0 1.050450 4 25.0 -25.0 -25.0 1.033962 5 25.0 -25.0 25.0 1.049765 6 25.0 25.0 -25.0 1.043729 7 25.0 25.0 25.0 1.070996 REL: 8 0.399041 8.348366 1.043546 rel = 0.38239 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9932 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.3824 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3932 0.3932 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.3896 0.3896 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.3882 0.3882 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.3864 0.3864 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.3862 0.3862 0.0 97 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.0000 0.3849 0.3849 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.3843 0.3843 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3836 0.3836 0.0 Brute Force -------------------------- Min cost was 0.383571 Number of iterations 729 Search time 1.950000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.143 0.000 0.000 0.000 0.000 0.000 0.3985947477 8 -0.127 0.000 0.000 0.000 0.000 0.000 0.3985907563 9 -0.131 0.000 0.000 0.000 0.000 0.000 0.3985902996 10 -0.132 0.000 0.000 0.000 0.000 0.000 0.3985902464 12 -0.133 0.000 0.000 0.000 0.000 0.000 0.3985901829 21 -0.133 0.031 0.000 0.000 0.000 0.000 0.3985422208 23 -0.133 0.025 0.000 0.000 0.000 0.000 0.3985384925 33 -0.133 0.024 0.382 0.000 0.000 0.000 0.3955914377 34 -0.133 0.024 0.329 0.000 0.000 0.000 0.3953062478 35 -0.133 0.024 0.288 0.000 0.000 0.000 0.3952498224 36 -0.133 0.024 0.293 0.000 0.000 0.000 0.3952468267 37 -0.133 0.024 0.296 0.000 0.000 0.000 0.3952464652 38 -0.133 0.024 0.295 0.000 0.000 0.000 0.3952464194 46 -0.133 0.024 0.295 0.123 0.000 0.000 0.3947974507 47 -0.133 0.024 0.295 0.120 0.000 0.000 0.3947944283 48 -0.133 0.024 0.295 0.111 0.000 0.000 0.3947922155 50 -0.133 0.024 0.295 0.113 0.000 0.000 0.3947918104 59 -0.133 0.024 0.295 0.114 0.108 0.000 0.3943948822 61 -0.133 0.024 0.295 0.114 0.091 0.000 0.3943800512 62 -0.133 0.024 0.295 0.114 0.092 0.000 0.3943798743 68 -0.133 0.024 0.295 0.114 0.092 -0.618 0.3892245715 70 -0.133 0.024 0.295 0.114 0.092 -0.504 0.3888437663 71 -0.133 0.024 0.295 0.114 0.092 -0.476 0.3888042851 83 -0.193 0.024 0.295 0.114 0.092 -0.476 0.3887751147 84 -0.170 0.024 0.295 0.114 0.092 -0.476 0.3887445973 85 -0.168 0.024 0.295 0.114 0.092 -0.476 0.3887434349 86 -0.161 0.024 0.295 0.114 0.092 -0.476 0.3887419289 88 -0.163 0.024 0.295 0.114 0.092 -0.476 0.3887418978 97 -0.163 0.096 0.295 0.114 0.092 -0.476 0.3884674076 99 -0.163 0.088 0.295 0.114 0.092 -0.476 0.3884628102 100 -0.163 0.087 0.295 0.114 0.092 -0.476 0.3884627619 108 -0.163 0.087 0.321 0.114 0.092 -0.476 0.3884140214 110 -0.163 0.087 0.326 0.114 0.092 -0.476 0.3884128733 119 -0.163 0.087 0.326 0.140 0.092 -0.476 0.3883672079 121 -0.163 0.087 0.326 0.143 0.092 -0.476 0.3883671635 123 -0.163 0.087 0.326 0.142 0.092 -0.476 0.3883671225 130 -0.163 0.087 0.326 0.142 0.224 -0.476 0.3878621347 131 -0.163 0.087 0.326 0.142 0.223 -0.476 0.3878612206 132 -0.163 0.087 0.326 0.142 0.211 -0.476 0.3878570950 144 -0.163 0.087 0.326 0.142 0.212 -0.500 0.3878281938 145 -0.163 0.087 0.326 0.142 0.212 -0.503 0.3878266281 147 -0.163 0.087 0.326 0.142 0.212 -0.506 0.3878262535 148 -0.163 0.087 0.326 0.142 0.212 -0.505 0.3878261972 150 -0.193 0.150 0.357 0.170 0.332 -0.534 0.3877013446 157 -0.181 0.125 0.345 0.159 0.285 -0.523 0.3875830306 159 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875815549 160 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875814980 172 -0.276 0.128 0.346 0.160 0.290 -0.524 0.3873284729 175 -0.284 0.128 0.346 0.160 0.290 -0.524 0.3873265784 176 -0.282 0.128 0.346 0.160 0.290 -0.524 0.3873261847 185 -0.282 0.121 0.346 0.160 0.290 -0.524 0.3873226515 196 -0.282 0.121 0.383 0.160 0.290 -0.524 0.3873106524 198 -0.282 0.121 0.367 0.160 0.290 -0.524 0.3872954561 200 -0.282 0.121 0.366 0.160 0.290 -0.524 0.3872954399 210 -0.282 0.121 0.366 0.156 0.290 -0.524 0.3872940597 211 -0.282 0.121 0.366 0.155 0.290 -0.524 0.3872939981 219 -0.282 0.121 0.366 0.155 0.290 -0.592 0.3872110852 220 -0.282 0.121 0.366 0.155 0.290 -0.580 0.3872086302 222 -0.282 0.121 0.366 0.155 0.290 -0.579 0.3872086258 231 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084376 235 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084272 237 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872082552 246 -0.285 0.123 0.367 0.156 0.293 -0.580 0.3872077911 250 -0.298 0.123 0.367 0.156 0.293 -0.580 0.3872053814 252 -0.297 0.123 0.367 0.156 0.293 -0.580 0.3872053607 260 -0.297 0.124 0.367 0.156 0.293 -0.580 0.3872044882 261 -0.297 0.132 0.367 0.156 0.293 -0.580 0.3872009406 264 -0.297 0.131 0.367 0.156 0.293 -0.580 0.3872009379 275 -0.297 0.131 0.365 0.156 0.293 -0.580 0.3872008005 284 -0.297 0.131 0.365 0.168 0.293 -0.580 0.3871989623 286 -0.297 0.131 0.365 0.163 0.293 -0.580 0.3871976771 297 -0.297 0.131 0.365 0.163 0.293 -0.583 0.3871975995 306 -0.296 0.129 0.364 0.162 0.289 -0.581 0.3871926752 307 -0.291 0.118 0.359 0.157 0.268 -0.576 0.3871920010 309 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871863782 311 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871862269 324 -0.301 0.123 0.361 0.160 0.278 -0.579 0.3871855990 325 -0.299 0.123 0.361 0.160 0.278 -0.579 0.3871851294 334 -0.299 0.124 0.361 0.160 0.278 -0.579 0.3871842671 335 -0.299 0.133 0.361 0.160 0.278 -0.579 0.3871818538 337 -0.299 0.131 0.361 0.160 0.278 -0.579 0.3871814371 347 -0.299 0.131 0.358 0.160 0.278 -0.579 0.3871805819 358 -0.299 0.131 0.358 0.164 0.278 -0.579 0.3871793024 359 -0.299 0.131 0.358 0.165 0.278 -0.579 0.3871792906 368 -0.299 0.131 0.358 0.165 0.278 -0.583 0.3871789270 369 -0.299 0.131 0.358 0.165 0.278 -0.582 0.3871789071 370 -0.299 0.131 0.358 0.165 0.278 -0.581 0.3871786252 380 -0.297 0.128 0.357 0.163 0.273 -0.580 0.3871780292 382 -0.297 0.129 0.357 0.164 0.273 -0.580 0.3871779151 397 -0.296 0.129 0.357 0.164 0.273 -0.580 0.3871779108 405 -0.296 0.135 0.357 0.164 0.273 -0.580 0.3871773556 407 -0.296 0.132 0.357 0.164 0.273 -0.580 0.3871768371 428 -0.296 0.132 0.357 0.165 0.273 -0.580 0.3871767962 429 -0.296 0.132 0.357 0.166 0.273 -0.580 0.3871767886 438 -0.296 0.132 0.357 0.166 0.273 -0.584 0.3871764837 449 -0.296 0.132 0.356 0.166 0.272 -0.582 0.3871764773 453 -0.296 0.132 0.357 0.166 0.273 -0.582 0.3871764492 455 -0.295 0.135 0.356 0.168 0.272 -0.585 0.3871762311 462 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761684 468 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761649 469 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761602 503 -0.295 0.135 0.355 0.168 0.272 -0.584 0.3871761349 531 -0.295 0.136 0.355 0.167 0.272 -0.585 0.3871760497 534 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 539 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 575 -0.295 0.136 0.356 0.167 0.272 -0.586 0.3871759713 610 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759616 611 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759518 633 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759358 643 -0.295 0.136 0.355 0.168 0.272 -0.586 0.3871759350 Powell done niters = 8 Computing relative cost 0 -25.0 -25.0 -25.0 1.018295 1 -25.0 -25.0 25.0 1.065241 2 -25.0 25.0 -25.0 1.020058 3 -25.0 25.0 25.0 1.055383 4 25.0 -25.0 -25.0 1.036075 5 25.0 -25.0 25.0 1.050567 6 25.0 25.0 -25.0 1.043855 7 25.0 25.0 25.0 1.069080 REL: 8 0.387176 8.358553 1.044819 rel = 0.370567 Number of iterations 8 Min cost was 0.387176 Number of FunctionCalls 682 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 124.886000 sec Parameters at optimum (transmm) -0.29477 0.13618 0.35526 Parameters at optimum (rotdeg) 0.16728 0.27177 -0.58568 Costs at optimum 227537 0.6571 0.2657 30.3707 0.8299 0.3070 22.3892 0.3872 Reg at min cost was 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.004 -0.010 0.455; 0.010 -0.003 0.000 -0.141; 0.005 -0.000 -0.003 -0.311; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.693981 Computing change in rh position Surface RMS Diff (mm) 0.610632 1.160309 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Sun May 12 15:06:39 CDT 2013 Ended at Sun May 12 15:10:09 CDT 2013 BBR-Run-Time-Sec 210 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Sun May 12 15:10:09 CDT 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Sun May 12 15:14:02 CDT 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 420047 values in range Counting number of voxels Found 420047 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 442102 values in range Counting number of voxels Found 442102 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 18636 values in range Counting number of voxels Found 18636 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838430 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 10 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 4.000000 4 k 753.000000 5 k 1.000000 6 k 6.000000 7 k 1.000000 8 k 1.000000 9 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 6.000000 2 k 2.000000 3 k 1.000000 4 k 722.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 444728 values in range Counting number of voxels Found 444728 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 696836 values in range Counting number of voxels Found 696836 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 16976 values in range Counting number of voxels Found 16976 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/White-Matter.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter++.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter++.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/notventricles.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/notventricles.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/notventricles.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/cortex.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/cortex.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/cortex.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/cortex.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/cortex.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_snr.txt flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour #------------------------------------- #@# Tensor fit Sun May 12 15:25:05 CDT 2013 dtifit -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -m /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs -b /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals -o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit 0 64 0 64 0 30 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Sun May 12 15:26:01 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.29885.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.29885.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.29885.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 898 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 5062 total streamlines (min/mean/max length: 62/100/132) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2859 non-truncated streamlines (min/mean/max length: 65/100/132) INFO: Center of mass of start points: (97+/-4, 98+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 76+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34329 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 98 32 100 105 47 113 110 86 113 105 121 114 105 141 INFO: Distances between consecutive points are 17 41 35 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 225.016 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 929 streamlines for straying off mask INFO: Rejected 889 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4245 total streamlines (min/mean/max length: 50/97/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2597 non-truncated streamlines (min/mean/max length: 52/97/137) INFO: Center of mass of start points: (78+/-8, 100+/-9, 68+/-45) INFO: Center of mass of midpoints: (81+/-3, 99+/-6, 46+/-14) INFO: Center of mass of end points: (71+/-10, 102+/-9, 115+/-44) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 36155 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 98 36 73 108 61 63 111 88 68 103 139 67 103 146 INFO: Distances between consecutive points are 29 29 52 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 159.698 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 246 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2078 total streamlines (min/mean/max length: 44/87/121) Processing pathway 3 of 18... Matching streamline ends INFO: Have 794 non-truncated streamlines (min/mean/max length: 51/96/121) INFO: Center of mass of start points: (124+/-15, 100+/-44, 50+/-15) INFO: Center of mass of midpoints: (133+/-5, 129+/-3, 43+/-6) INFO: Center of mass of end points: (120+/-15, 75+/-43, 62+/-18) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23586 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 133 40 133 110 55 131 86 63 118 64 71 107 49 56 INFO: Distances between consecutive points are 28 25 27 24 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 137 133 40 134 110 54 131 86 63 118 64 71 107 48 56 INFO: Distances between consecutive points are 27 26 27 25 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 138 133 40 130 85 63 121 67 70 109 49 67 107 48 56 INFO: Distances between consecutive points are 54 21 22 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 70.951 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 131 streamlines for straying off mask INFO: Rejected 25 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1111 total streamlines (min/mean/max length: 52/92/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 486 non-truncated streamlines (min/mean/max length: 58/103/123) INFO: Center of mass of start points: (53+/-11, 124+/-36, 43+/-13) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 41+/-5) INFO: Center of mass of end points: (65+/-13, 59+/-36, 68+/-18) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 19323 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 110 57 50 86 65 64 59 75 70 40 59 INFO: Distances between consecutive points are 32 25 32 26 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 112 56 49 87 66 61 62 75 71 40 64 INFO: Distances between consecutive points are 29 27 29 27 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 124 49 45 99 59 54 74 71 73 45 75 INFO: Distances between consecutive points are 24 27 29 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 39 49 115 53 49 90 61 61 67 75 77 40 78 INFO: Distances between consecutive points are 26 26 29 32 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 46 147 42 48 125 48 45 100 58 53 76 69 66 50 73 INFO: Distances between consecutive points are 23 27 28 29 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 136 40 48 124 46 50 87 64 67 55 77 77 40 78 INFO: Distances between consecutive points are 15 41 38 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 101.283 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 4212 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 58 total streamlines (min/mean/max length: 1/14/32) Processing pathway 5 of 18... Matching streamline ends INFO: Have 29 non-truncated streamlines (min/mean/max length: 10/13/21) INFO: Center of mass of start points: (125+/-1, 132+/-4, 47+/-6) INFO: Center of mass of midpoints: (126+/-2, 131+/-2, 47+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 51+/-5) INFO: Split streamlines into 3 segments Computing path histograms INFO: Total streamline volume is 442 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 130 50 126 128 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 125 126 51 123 126 48 122 128 45 120 130 43 INFO: Distances between consecutive points are 3 4 4 3 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 127 50 131 132 49 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 125 132 45 125 130 48 126 129 51 126 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 128 54 126 129 51 126 130 49 126 131 47 125 135 43 INFO: Distances between consecutive points are 3 2 2 6 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 129 50 126 128 54 INFO: Distances between consecutive points are 2 2 4 4 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 45 126 132 47 126 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 126 132 45 126 130 48 127 129 51 127 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 44 125 133 45 125 132 47 125 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 45 124 133 45 126 131 47 127 129 49 127 128 54 INFO: Distances between consecutive points are 2 3 3 5 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 46 125 131 48 126 130 50 126 129 54 INFO: Distances between consecutive points are 3 3 2 4 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 130 52 126 130 50 125 131 48 125 134 44 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 45 124 132 46 125 130 47 126 129 49 127 129 54 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 129 52 126 130 50 126 131 48 125 135 44 INFO: Distances between consecutive points are 2 2 2 6 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 125 132 45 125 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 44 124 131 45 126 129 48 126 128 51 127 128 54 INFO: Distances between consecutive points are 3 4 3 3 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 132 45 125 131 47 125 130 49 125 129 54 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 131 46 124 130 48 125 129 51 125 128 54 INFO: Distances between consecutive points are 4 2 3 3 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 124 132 45 124 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 129 54 127 129 52 127 130 50 127 131 48 125 136 44 INFO: Distances between consecutive points are 2 2 2 7 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 135 43 126 132 45 127 130 48 128 128 52 127 127 55 INFO: Distances between consecutive points are 4 4 5 3 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 43 124 130 46 125 128 49 125 127 51 126 126 56 INFO: Distances between consecutive points are 4 4 2 5 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 122 133 42 124 130 45 125 128 48 125 127 51 126 126 55 INFO: Distances between consecutive points are 5 4 3 4 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 55 126 128 53 126 128 51 126 129 49 127 133 48 INFO: Distances between consecutive points are 2 2 2 4 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 136 46 126 134 48 127 132 49 127 130 51 127 129 54 INFO: Distances between consecutive points are 3 2 3 3 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 15 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 127 126 53 127 127 50 128 130 47 130 135 47 INFO: Distances between consecutive points are 3 3 4 5 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 126 126 52 126 127 47 126 129 43 124 133 40 INFO: Distances between consecutive points are 4 5 4 5 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 125 57 127 124 53 128 125 49 129 129 44 130 133 42 INFO: Distances between consecutive points are 4 4 6 5 WARN: Could not find satisfactory control point fit - try 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 26.351 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 669 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 4 streamlines as length outliers INFO: Have 4972 total streamlines (min/mean/max length: 9/64/102) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3858 non-truncated streamlines (min/mean/max length: 9/65/102) INFO: Center of mass of start points: (59+/-11, 151+/-14, 47+/-8) INFO: Center of mass of midpoints: (53+/-4, 133+/-2, 44+/-3) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 20129 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 133 44 57 129 59 75 159 62 77 172 59 INFO: Distances between consecutive points are 13 16 35 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 113.09 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 3142 streamlines for straying off mask INFO: Rejected 182 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 4120 total streamlines (min/mean/max length: 80/129/158) Processing pathway 7 of 18... Matching streamline ends INFO: Have 3167 non-truncated streamlines (min/mean/max length: 80/131/158) INFO: Center of mass of start points: (89+/-15, 40+/-11, 100+/-16) INFO: Center of mass of midpoints: (106+/-5, 45+/-10, 94+/-13) INFO: Center of mass of end points: (87+/-16, 40+/-10, 101+/-16) INFO: Split streamlines into 33 segments Computing path histograms INFO: Total streamline volume is 49457 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 54 86 95 89 84 63 67 87 72 39 109 INFO: Distances between consecutive points are 34 41 39 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 60 66 92 89 91 83 116 64 89 98 37 104 INFO: Distances between consecutive points are 32 39 39 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 65 91 88 91 83 116 65 90 98 36 103 INFO: Distances between consecutive points are 33 40 39 37 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 37 104 116 61 88 91 90 82 60 67 92 77 41 103 INFO: Distances between consecutive points are 34 39 40 33 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 63 86 90 90 83 62 65 88 77 39 110 INFO: Distances between consecutive points are 36 39 38 37 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 59 65 92 91 91 83 117 61 88 98 34 103 INFO: Distances between consecutive points are 33 42 40 36 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 59 66 92 90 91 83 117 62 89 98 36 103 INFO: Distances between consecutive points are 34 41 40 35 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 66 88 91 89 84 116 60 89 98 45 116 INFO: Distances between consecutive points are 36 36 39 36 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 89 89 84 116 62 88 97 45 116 INFO: Distances between consecutive points are 36 35 38 38 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 59 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 61 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 157 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 36 109 120 60 86 91 93 84 58 66 89 79 39 104 INFO: Distances between consecutive points are 37 44 43 37 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 72 38 109 INFO: Distances between consecutive points are 32 36 38 33 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 37 101 116 62 89 92 89 85 63 71 87 72 41 104 INFO: Distances between consecutive points are 30 36 34 36 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 91 89 83 115 61 89 98 45 116 INFO: Distances between consecutive points are 36 36 37 36 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 90 89 83 114 62 88 98 45 114 INFO: Distances between consecutive points are 36 36 36 35 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 63 71 86 93 86 82 118 60 87 98 38 111 INFO: Distances between consecutive points are 37 34 36 38 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 64 86 90 93 84 58 69 88 78 39 101 INFO: Distances between consecutive points are 39 42 40 38 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 72 37 103 INFO: Distances between consecutive points are 31 35 34 37 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 64 78 86 99 89 83 120 58 86 102 38 109 INFO: Distances between consecutive points are 36 37 38 35 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 64 84 99 37 105 INFO: Distances between consecutive points are 38 36 36 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 108 113 63 89 89 90 86 62 66 92 73 42 97 INFO: Distances between consecutive points are 33 36 37 27 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 36 104 116 62 84 92 88 81 63 67 84 75 36 103 INFO: Distances between consecutive points are 37 36 36 38 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 63 85 99 41 105 INFO: Distances between consecutive points are 32 33 33 34 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 75 44 93 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 73 44 106 INFO: Distances between consecutive points are 31 35 34 33 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 35 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 97 90 83 63 77 87 74 44 92 INFO: Distances between consecutive points are 37 39 37 35 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 98 89 83 120 60 86 95 40 104 INFO: Distances between consecutive points are 36 36 37 37 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 35 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 114 62 85 95 90 84 66 72 87 81 44 87 INFO: Distances between consecutive points are 35 34 34 32 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 35 31 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 62 84 99 37 105 INFO: Distances between consecutive points are 38 35 37 37 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 65 84 99 37 104 INFO: Distances between consecutive points are 38 35 35 38 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 117 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 91 86 82 63 69 86 74 39 101 INFO: Distances between consecutive points are 31 35 33 35 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 62 75 87 94 91 83 120 65 86 100 40 102 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 38 103 INFO: Distances between consecutive points are 41 39 41 43 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 69 87 90 90 84 116 68 85 102 41 106 INFO: Distances between consecutive points are 30 33 34 37 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 63 84 99 36 103 INFO: Distances between consecutive points are 38 36 37 37 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 64 84 83 90 82 118 71 88 93 38 103 INFO: Distances between consecutive points are 40 38 40 44 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 41 95 62 75 86 95 91 82 119 62 85 94 40 104 INFO: Distances between consecutive points are 39 37 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 40 104 56 66 85 85 90 83 119 69 89 94 42 105 INFO: Distances between consecutive points are 40 38 40 40 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 67 85 85 90 82 119 68 89 93 39 104 INFO: Distances between consecutive points are 41 37 41 42 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 63 67 84 86 92 84 114 72 89 100 37 87 INFO: Distances between consecutive points are 35 34 35 38 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 55 66 84 84 91 83 119 70 89 94 39 104 INFO: Distances between consecutive points are 42 38 41 43 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 60 86 98 89 82 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 36 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 60 84 102 34 102 INFO: Distances between consecutive points are 39 36 38 35 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 57 88 90 86 85 60 64 90 73 36 104 INFO: Distances between consecutive points are 30 37 38 34 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 103 63 67 84 93 88 81 117 61 84 98 35 103 INFO: Distances between consecutive points are 38 37 36 37 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 36 102 61 64 89 86 87 85 112 62 89 99 35 100 INFO: Distances between consecutive points are 33 34 36 32 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 99 89 82 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 61 63 89 85 87 85 111 63 88 99 35 100 INFO: Distances between consecutive points are 33 34 36 33 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 105 115 63 90 87 89 82 60 63 84 79 32 88 INFO: Distances between consecutive points are 30 39 38 37 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 66 88 88 91 83 55 69 85 80 39 98 INFO: Distances between consecutive points are 42 41 40 41 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 97 90 82 120 63 85 98 34 99 INFO: Distances between consecutive points are 36 35 36 39 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 67 88 88 91 83 55 69 85 80 39 97 INFO: Distances between consecutive points are 42 40 40 41 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 104 119 65 88 89 90 82 56 71 85 80 39 97 INFO: Distances between consecutive points are 41 40 38 42 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 90 87 84 61 64 89 73 35 102 INFO: Distances between consecutive points are 32 35 37 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 93 88 81 117 61 83 98 34 102 INFO: Distances between consecutive points are 38 37 36 38 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 56 88 92 85 85 61 66 90 75 37 107 INFO: Distances between consecutive points are 29 35 37 36 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 103 64 68 82 91 90 81 117 63 84 98 35 103 INFO: Distances between consecutive points are 39 35 38 39 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 116 59 84 97 86 81 66 74 85 79 43 101 INFO: Distances between consecutive points are 36 33 33 37 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 115 60 92 92 86 85 61 71 92 73 37 96 INFO: Distances between consecutive points are 32 35 35 36 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 38 98 55 67 84 84 91 83 118 71 89 94 42 106 INFO: Distances between consecutive points are 41 38 40 41 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 91 87 84 62 67 89 74 36 102 INFO: Distances between consecutive points are 32 35 36 36 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 62 83 98 34 102 INFO: Distances between consecutive points are 39 36 36 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 104 115 60 92 93 86 85 61 73 92 72 38 100 INFO: Distances between consecutive points are 32 35 35 38 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 58 88 92 86 84 61 66 89 74 36 103 INFO: Distances between consecutive points are 30 34 37 36 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 116 63 93 90 87 86 59 69 93 72 39 109 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 33 100 117 61 84 95 90 81 64 70 81 75 36 104 INFO: Distances between consecutive points are 36 37 37 42 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 119 63 88 94 90 83 60 79 86 72 42 93 INFO: Distances between consecutive points are 39 37 36 40 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 44 101 64 72 83 97 88 81 116 59 84 98 34 103 INFO: Distances between consecutive points are 37 37 35 36 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 36 92 119 70 88 80 90 82 57 62 84 80 39 97 INFO: Distances between consecutive points are 42 44 36 35 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 3374.13 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 1207 streamlines for straying off mask INFO: Rejected 351 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 13034 total streamlines (min/mean/max length: 51/83/109) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10164 non-truncated streamlines (min/mean/max length: 53/85/112) INFO: Center of mass of start points: (91+/-13, 186+/-6, 76+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 44863 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 85 191 81 72 166 72 93 154 76 109 169 71 101 182 78 INFO: Distances between consecutive points are 30 25 22 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 802.155 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from 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/usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 84 streamlines for straying off mask INFO: Rejected 13 streamlines for reversing direction INFO: Rejected 32 streamlines as length outliers INFO: Have 8985 total streamlines (min/mean/max length: 30/58/86) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3541 non-truncated streamlines (min/mean/max length: 37/67/85) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-14, 150+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 32785 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 119 80 101 127 78 108 140 78 111 173 70 107 181 67 INFO: Distances between consecutive points are 9 15 34 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 330.027 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 164 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 7551 total streamlines (min/mean/max length: 31/60/87) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3430 non-truncated streamlines (min/mean/max length: 42/68/87) INFO: Center of mass of start points: (71+/-11, 166+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 29975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 75 194 84 77 190 83 67 165 76 68 148 80 83 116 76 INFO: Distances between consecutive points are 5 28 17 36 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 272.989 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from 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/usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 1937 streamlines for straying off mask INFO: Rejected 17 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1132 total streamlines (min/mean/max length: 1/33/72) Processing pathway 11 of 18... Matching streamline ends INFO: Have 475 non-truncated streamlines (min/mean/max length: 14/38/70) INFO: Center of mass of start points: (116+/-5, 106+/-12, 50+/-10) INFO: Center of mass of midpoints: (109+/-4, 85+/-2, 70+/-3) INFO: Center of mass of end points: (111+/-6, 81+/-12, 74+/-12) INFO: Split streamlines into 7 segments Computing path histograms INFO: Total streamline volume is 6794 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 31 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 118 108 45 117 105 48 110 95 61 109 87 68 109 82 73 INFO: Distances between consecutive points are 4 18 11 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 20.868 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 326 streamlines for straying off mask INFO: Rejected 101 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2619 total streamlines (min/mean/max length: 11/40/99) Processing pathway 12 of 18... Matching streamline ends INFO: Have 855 non-truncated streamlines (min/mean/max length: 13/46/99) INFO: Center of mass of start points: (63+/-4, 114+/-14, 47+/-10) INFO: Center of mass of midpoints: (70+/-4, 87+/-2, 70+/-3) INFO: Center of mass of end points: (69+/-5, 82+/-12, 78+/-12) INFO: Split streamlines into 9 segments Computing path histograms INFO: Total streamline volume is 12804 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 57 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 62 123 41 67 115 42 67 111 43 70 83 74 66 72 80 INFO: Distances between consecutive points are 9 4 42 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 30.062 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4065 total streamlines (min/mean/max length: 27/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2431 non-truncated streamlines (min/mean/max length: 27/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-4, 105+/-2) INFO: Center of mass of end points: (99+/-4, 97+/-30, 102+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 157 87 97 141 95 97 125 102 98 100 104 101 83 103 INFO: Distances between consecutive points are 18 17 25 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 90.584 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 118 streamlines for straying off mask INFO: Rejected 1 streamlines for reversing direction INFO: Rejected 25 streamlines as length outliers INFO: Have 3528 total streamlines (min/mean/max length: 29/62/125) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2234 non-truncated streamlines (min/mean/max length: 30/65/125) INFO: Center of mass of start points: (81+/-4, 119+/-33, 99+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16105 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 145 96 83 136 102 82 112 104 76 82 104 77 74 106 INFO: Distances between consecutive points are 11 24 31 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 61.578 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 564 streamlines for straying off mask INFO: Rejected 250 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5750 total streamlines (min/mean/max length: 23/58/100) Processing pathway 15 of 18... Matching streamline ends INFO: Have 2878 non-truncated streamlines (min/mean/max length: 30/65/100) INFO: Center of mass of start points: (143+/-8, 113+/-21, 99+/-13) INFO: Center of mass of midpoints: (131+/-6, 118+/-3, 99+/-5) INFO: Center of mass of end points: (144+/-8, 98+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 37225 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 129 104 128 115 100 129 89 102 137 86 106 144 88 113 INFO: Distances between consecutive points are 23 26 9 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 159.302 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 637 streamlines for straying off mask INFO: Rejected 476 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 8195 total streamlines (min/mean/max length: 20/62/124) Processing pathway 16 of 18... Matching streamline ends INFO: Have 3949 non-truncated streamlines (min/mean/max length: 27/68/125) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-2, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 48752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 135 103 35 131 100 52 119 100 53 81 101 41 74 115 INFO: Distances between consecutive points are 6 21 38 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 336.29 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 625 streamlines for straying off mask INFO: Rejected 34 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3430 total streamlines (min/mean/max length: 34/86/148) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2415 non-truncated streamlines (min/mean/max length: 37/89/148) INFO: Center of mass of start points: (144+/-7, 105+/-26, 77+/-17) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (144+/-7, 108+/-26, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 30284 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 92 61 137 85 65 122 79 94 126 104 103 138 122 96 INFO: Distances between consecutive points are 14 33 27 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 99.804 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 165 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1652 total streamlines (min/mean/max length: 30/85/128) Processing pathway 18 of 18... Matching streamline ends INFO: Have 992 non-truncated streamlines (min/mean/max length: 57/89/128) INFO: Center of mass of start points: (36+/-8, 114+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-8, 101+/-28, 81+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 21265 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 31 132 105 53 118 104 54 96 105 53 79 90 36 79 67 INFO: Distances between consecutive points are 26 22 23 29 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 30 130 106 53 117 104 54 92 104 53 78 89 36 79 67 INFO: Distances between consecutive points are 26 25 21 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 68.853 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.29885.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.29885.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr Training subject directory list: /private/tmp/subj23.freesurfer.29885.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 928 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 5020 total streamlines (min/mean/max length: 63/100/130) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2639 non-truncated streamlines (min/mean/max length: 66/100/133) INFO: Center of mass of start points: (97+/-4, 99+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 77+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 33771 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 96 98 30 100 105 46 112 112 76 112 106 120 112 111 145 INFO: Distances between consecutive points are 18 33 44 25 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 243.357 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1040 streamlines for straying off mask INFO: Rejected 726 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4297 total streamlines (min/mean/max length: 51/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2557 non-truncated streamlines (min/mean/max length: 53/97/136) INFO: Center of mass of start points: (78+/-8, 100+/-9, 67+/-45) INFO: Center of mass of midpoints: (81+/-3, 100+/-6, 45+/-13) INFO: Center of mass of end points: (71+/-10, 102+/-9, 114+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 35942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 102 37 78 102 41 76 106 58 65 111 82 69 103 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 176.827 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 299 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 2031 total streamlines (min/mean/max length: 43/87/118) Processing pathway 3 of 18... Matching streamline ends INFO: Have 759 non-truncated streamlines (min/mean/max length: 49/95/118) INFO: Center of mass of start points: (125+/-14, 103+/-43, 48+/-14) INFO: Center of mass of midpoints: (133+/-5, 130+/-2, 43+/-5) INFO: Center of mass of end points: (120+/-14, 73+/-42, 61+/-17) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23094 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 134 129 43 133 101 62 132 85 67 120 64 73 113 43 67 INFO: Distances between consecutive points are 34 17 25 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 51.67 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 163 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1084 total streamlines (min/mean/max length: 52/93/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 446 non-truncated streamlines (min/mean/max length: 58/101/126) INFO: Center of mass of start points: (53+/-11, 123+/-36, 43+/-14) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 40+/-5) INFO: Center of mass of end points: (64+/-13, 61+/-37, 69+/-19) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 19350 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 126 50 44 98 60 56 70 73 75 41 76 INFO: Distances between consecutive points are 22 30 33 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 51 149 44 52 140 43 46 111 52 59 56 73 66 44 82 INFO: Distances between consecutive points are 9 31 60 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 76.565 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 4221 streamlines for straying off mask INFO: Rejected 2 streamlines for reversing direction INFO: Rejected 9 streamlines as length outliers INFO: Have 56 total streamlines (min/mean/max length: 1/13/33) Processing pathway 5 of 18... Matching streamline ends INFO: Have 27 non-truncated streamlines (min/mean/max length: 1/11/20) INFO: Center of mass of start points: (126+/-2, 132+/-3, 47+/-5) INFO: Center of mass of midpoints: (126+/-2, 131+/-1, 46+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 50+/-5) INFO: Split streamlines into 1 segments Computing path histograms INFO: Total streamline volume is 409 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 42 124 130 45 125 128 49 125 127 52 126 127 55 INFO: Distances between consecutive points are 4 5 3 3 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 130 135 45 130 132 46 129 129 46 128 127 49 128 126 55 INFO: Distances between consecutive points are 3 3 4 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 128 50 131 133 48 INFO: Distances between consecutive points are 3 2 3 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 127 125 53 128 125 49 129 127 46 130 134 42 INFO: Distances between consecutive points are 3 4 4 8 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 20 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 132 38 127 129 42 127 127 46 128 125 50 126 125 57 INFO: Distances between consecutive points are 5 4 5 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 126 126 52 125 126 50 123 127 48 121 130 43 INFO: Distances between consecutive points are 2 2 3 6 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 2 voxels Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Sun May 12 17:33:39 CDT 2013 New invocation of trac-all Mon May 13 09:48:36 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 788M wired, 1244M active, 285M inactive, 2316M used, 9955M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/13-14:48:37-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-14:48:37-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-14:48:37-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-14:48:37-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-14:48:37-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 793M wired, 1241M active, 285M inactive, 2318M used, 9954M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mon May 13 09:48:39 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Mon May 13 09:51:12 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Mon May 13 09:51:54 CDT 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /usr/local/freesurfer5.1 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister --dof 6 Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat.fslregister.log Mon May 13 09:51:55 CDT 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister --dof 6 $Id: fslregister,v 1.29.2.1 2010/08/04 15:50:56 nicks Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii... /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/reg0.92409.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/reg0.92409.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Mon May 13 09:52:01 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/fslregister/movvol.fslregister.nii -bins 256 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat.fsl.mat -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -schedule /usr/local/freesurfer5.1/bin/flirt.newdefault.20080811.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat.fsl.mat0 tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl ---- FSL registration matrix -------- 0.998 -0.057 0.004 5.868; 0.004 -0.002 -1.000 177.520; 0.057 0.998 -0.002 -10.385; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Started at Mon May 13 09:51:55 CDT 2013 Ended at Mon May 13 09:52:27 CDT 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1369254377 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.052920 1 -25.0 -25.0 25.0 1.075045 2 -25.0 25.0 -25.0 1.065947 3 -25.0 25.0 25.0 1.051200 4 25.0 -25.0 -25.0 1.055070 5 25.0 -25.0 25.0 1.037468 6 25.0 25.0 -25.0 1.060834 7 25.0 25.0 25.0 1.037068 REL: 8 1.004362 8.435552 1.054444 rel = 0.952504 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9940 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.9525 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9809 0.9809 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9767 0.9767 0.0 8 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.9704 0.9704 0.0 14 -4.0000 -4.0000 -4.0000 0.0000 0.0000 4.0000 0.9684 0.9684 0.0 16 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.9656 0.9656 0.0 25 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.0000 0.9448 0.9448 0.0 36 -4.0000 -4.0000 0.0000 0.0000 -4.0000 -4.0000 0.9370 0.9370 0.0 45 -4.0000 -4.0000 0.0000 4.0000 -4.0000 -4.0000 0.8832 0.8832 0.0 48 -4.0000 -4.0000 0.0000 4.0000 0.0000 -4.0000 0.8771 0.8771 0.0 63 -4.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.7775 0.7775 0.0 289 0.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7464 0.7464 0.0 306 0.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.6717 0.6717 0.0 307 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.0000 0.5694 0.5694 0.0 316 0.0000 -4.0000 4.0000 4.0000 -4.0000 0.0000 0.5252 0.5252 0.0 Brute Force -------------------------- Min cost was 0.525227 Number of iterations 729 Search time 0.983000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 4.000 4.000 -4.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 4 3 4 4 -4 5 0 2 1.000 -4.000 4.000 4.000 -4.000 0.000 0.5106599540 5 1.618 -4.000 4.000 4.000 -4.000 0.000 0.5105962093 7 1.310 -4.000 4.000 4.000 -4.000 0.000 0.5055248328 8 1.311 -4.000 4.000 4.000 -4.000 0.000 0.5055217160 9 1.335 -4.000 4.000 4.000 -4.000 0.000 0.5055208971 11 1.323 -4.000 4.000 4.000 -4.000 0.000 0.5054959814 20 1.323 -4.230 4.000 4.000 -4.000 0.000 0.5043035939 23 1.323 -4.256 4.000 4.000 -4.000 0.000 0.5041775435 24 1.323 -4.302 4.000 4.000 -4.000 0.000 0.5041090080 25 1.323 -4.294 4.000 4.000 -4.000 0.000 0.5040975435 26 1.323 -4.289 4.000 4.000 -4.000 0.000 0.5040963378 27 1.323 -4.290 4.000 4.000 -4.000 0.000 0.5040961064 33 1.323 -4.290 3.382 4.000 -4.000 0.000 0.5027754155 35 1.323 -4.290 3.558 4.000 -4.000 0.000 0.5014410566 36 1.323 -4.290 3.642 4.000 -4.000 0.000 0.5013800266 37 1.323 -4.290 3.614 4.000 -4.000 0.000 0.5011792103 38 1.323 -4.290 3.603 4.000 -4.000 0.000 0.5011125442 39 1.323 -4.290 3.586 4.000 -4.000 0.000 0.5010944026 40 1.323 -4.290 3.591 4.000 -4.000 0.000 0.5010827992 45 1.323 -4.290 3.591 2.382 -4.000 0.000 0.4468564334 51 1.323 -4.290 3.591 2.467 -4.000 0.000 0.4460581859 66 1.323 -4.290 3.591 2.467 -3.901 0.000 0.4433114088 67 1.323 -4.290 3.591 2.467 -3.846 0.000 0.4428472942 69 1.323 -4.290 3.591 2.467 -3.854 0.000 0.4428285515 70 1.323 -4.290 3.591 2.467 -3.856 0.000 0.4428283343 72 1.323 -4.290 3.591 2.467 -3.855 0.000 0.4428281112 74 1.323 -4.290 3.591 2.467 -3.855 1.000 0.4338664518 79 1.323 -4.290 3.591 2.467 -3.855 0.861 0.4314703072 80 1.323 -4.290 3.591 2.467 -3.855 0.829 0.4311998994 82 1.323 -4.290 3.591 2.467 -3.855 0.816 0.4311541398 84 1.323 -4.290 3.591 2.467 -3.855 0.811 0.4311505471 85 1.323 -4.290 3.591 2.467 -3.855 0.810 0.4311505176 96 1.328 -4.290 3.591 2.467 -3.855 0.810 0.4311413456 103 1.328 -4.909 3.591 2.467 -3.855 0.810 0.4255613128 107 1.328 -4.818 3.591 2.467 -3.855 0.810 0.4250163992 110 1.328 -4.801 3.591 2.467 -3.855 0.810 0.4249050064 112 1.328 -4.795 3.591 2.467 -3.855 0.810 0.4248932537 113 1.328 -4.794 3.591 2.467 -3.855 0.810 0.4248931137 121 1.328 -4.794 3.668 2.467 -3.855 0.810 0.4240501760 122 1.328 -4.794 3.719 2.467 -3.855 0.810 0.4239609824 123 1.328 -4.794 3.705 2.467 -3.855 0.810 0.4239167432 125 1.328 -4.794 3.704 2.467 -3.855 0.810 0.4239166761 131 1.328 -4.794 3.704 1.849 -3.855 0.810 0.4214001098 133 1.328 -4.794 3.704 2.115 -3.855 0.810 0.4183284348 136 1.328 -4.794 3.704 2.120 -3.855 0.810 0.4183284069 137 1.328 -4.794 3.704 2.118 -3.855 0.810 0.4183273988 148 1.328 -4.794 3.704 2.118 -3.863 0.810 0.4182968373 149 1.328 -4.794 3.704 2.118 -3.870 0.810 0.4182956917 150 1.328 -4.794 3.704 2.118 -3.867 0.810 0.4182924243 161 1.328 -4.794 3.704 2.118 -3.867 0.848 0.4176188230 162 1.328 -4.794 3.704 2.118 -3.867 0.872 0.4174929360 164 1.328 -4.794 3.704 2.118 -3.867 0.870 0.4174923796 166 1.334 -5.297 3.817 1.768 -3.879 0.930 0.4076763915 174 1.332 -5.161 3.787 1.862 -3.875 0.914 0.4076376271 176 1.333 -5.228 3.802 1.816 -3.877 0.921 0.4068616793 177 1.333 -5.228 3.802 1.815 -3.877 0.922 0.4068615018 178 1.333 -5.229 3.802 1.815 -3.877 0.922 0.4068609495 182 1.333 -5.231 3.802 1.814 -3.877 0.922 0.4068608341 184 1.333 -5.230 3.802 1.814 -3.877 0.922 0.4068606392 191 1.152 -5.230 3.802 1.814 -3.877 0.922 0.4040879591 193 1.166 -5.230 3.802 1.814 -3.877 0.922 0.4040837921 195 1.160 -5.230 3.802 1.814 -3.877 0.922 0.4040776908 204 1.160 -5.230 3.802 1.814 -3.877 0.753 0.4027047936 206 1.160 -5.230 3.802 1.814 -3.877 0.800 0.4021350428 207 1.160 -5.230 3.802 1.814 -3.877 0.846 0.4021235860 208 1.160 -5.230 3.802 1.814 -3.877 0.824 0.4020115709 217 1.160 -5.230 3.736 1.814 -3.877 0.824 0.4016903656 219 1.160 -5.230 3.742 1.814 -3.877 0.824 0.4016702053 220 1.160 -5.230 3.765 1.814 -3.877 0.824 0.4016541939 221 1.160 -5.230 3.757 1.814 -3.877 0.824 0.4016496646 222 1.160 -5.230 3.758 1.814 -3.877 0.824 0.4016493991 230 1.160 -5.230 3.758 1.784 -3.877 0.824 0.4013536998 231 1.160 -5.230 3.758 1.718 -3.877 0.824 0.4013451311 233 1.160 -5.230 3.758 1.751 -3.877 0.824 0.4011763944 235 1.160 -5.230 3.758 1.747 -3.877 0.824 0.4011757592 238 1.160 -5.230 3.758 1.748 -3.877 0.824 0.4011749680 246 1.160 -5.230 3.758 1.748 -3.797 0.824 0.3999262769 248 1.160 -5.230 3.758 1.748 -3.793 0.824 0.3999149204 249 1.160 -5.230 3.758 1.748 -3.789 0.824 0.3999105726 257 1.162 -5.422 3.801 1.615 -3.793 0.847 0.3995070957 258 1.161 -5.341 3.783 1.671 -3.791 0.837 0.3994970308 259 1.162 -5.379 3.791 1.645 -3.792 0.841 0.3994073599 260 1.162 -5.381 3.792 1.644 -3.792 0.842 0.3994051580 261 1.162 -5.396 3.795 1.633 -3.793 0.844 0.3994029631 263 1.162 -5.390 3.794 1.638 -3.793 0.843 0.3994004335 275 1.122 -5.390 3.794 1.638 -3.793 0.843 0.3981968361 276 1.083 -5.390 3.794 1.638 -3.793 0.843 0.3975199589 279 1.082 -5.390 3.794 1.638 -3.793 0.843 0.3975185301 287 1.082 -5.390 3.794 1.638 -3.793 0.722 0.3959918015 290 1.082 -5.390 3.794 1.638 -3.793 0.724 0.3959917683 298 1.082 -5.390 3.708 1.638 -3.793 0.724 0.3951121417 299 1.082 -5.390 3.645 1.638 -3.793 0.724 0.3950914672 305 1.082 -5.390 3.635 1.638 -3.793 0.724 0.3950892525 306 1.082 -5.390 3.638 1.638 -3.793 0.724 0.3950870637 307 1.082 -5.390 3.639 1.638 -3.793 0.724 0.3950870013 317 1.082 -5.390 3.639 1.634 -3.793 0.724 0.3950829083 318 1.082 -5.390 3.639 1.632 -3.793 0.724 0.3950823597 326 1.082 -5.390 3.639 1.632 -3.633 0.724 0.3909688871 330 1.082 -5.390 3.639 1.632 -3.632 0.724 0.3909688275 338 1.084 -5.582 3.682 1.499 -3.636 0.746 0.3907930937 339 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901962422 340 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901929019 341 1.083 -5.514 3.667 1.546 -3.635 0.738 0.3900474551 342 1.083 -5.540 3.673 1.528 -3.636 0.741 0.3900158474 343 1.083 -5.533 3.671 1.533 -3.635 0.741 0.3899890777 344 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899870352 345 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899867231 354 0.897 -5.530 3.670 1.535 -3.635 0.740 0.3893905885 355 0.966 -5.530 3.670 1.535 -3.635 0.740 0.3885125243 356 0.979 -5.530 3.670 1.535 -3.635 0.740 0.3884778139 357 0.984 -5.530 3.670 1.535 -3.635 0.740 0.3884597016 359 0.999 -5.530 3.670 1.535 -3.635 0.740 0.3884312519 361 1.000 -5.530 3.670 1.535 -3.635 0.740 0.3884308719 369 1.000 -5.530 3.670 1.535 -3.635 0.613 0.3859645524 371 1.000 -5.530 3.670 1.535 -3.635 0.645 0.3854689898 373 1.000 -5.530 3.670 1.535 -3.635 0.644 0.3854689500 381 1.000 -5.530 3.669 1.535 -3.635 0.644 0.3854570276 383 1.000 -5.530 3.639 1.535 -3.635 0.644 0.3852312564 385 1.000 -5.530 3.633 1.535 -3.635 0.644 0.3852157104 386 1.000 -5.530 3.630 1.535 -3.635 0.644 0.3852130412 387 1.000 -5.530 3.629 1.535 -3.635 0.644 0.3852128318 397 1.000 -5.530 3.629 1.546 -3.635 0.644 0.3851704032 399 1.000 -5.530 3.629 1.547 -3.635 0.644 0.3851697145 411 1.000 -5.530 3.629 1.547 -3.623 0.644 0.3851066343 421 0.999 -5.514 3.625 1.559 -3.623 0.642 0.3850790925 422 0.999 -5.515 3.626 1.557 -3.623 0.642 0.3850775991 423 0.999 -5.517 3.626 1.556 -3.623 0.643 0.3850767121 424 0.999 -5.518 3.626 1.556 -3.623 0.643 0.3850762962 427 0.999 -5.519 3.626 1.555 -3.623 0.643 0.3850762474 436 0.977 -5.515 3.614 1.561 -3.619 0.616 0.3847268755 437 0.967 -5.514 3.609 1.563 -3.618 0.605 0.3847038554 438 0.969 -5.514 3.610 1.563 -3.618 0.607 0.3847033048 439 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847030254 440 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847029014 452 0.931 -5.514 3.610 1.563 -3.618 0.607 0.3844474694 453 0.936 -5.514 3.610 1.563 -3.618 0.607 0.3844016973 454 0.943 -5.514 3.610 1.563 -3.618 0.607 0.3843628983 456 0.944 -5.514 3.610 1.563 -3.618 0.607 0.3843615000 457 0.945 -5.514 3.610 1.563 -3.618 0.607 0.3843614069 467 0.945 -5.521 3.611 1.558 -3.618 0.607 0.3843290456 470 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843112069 471 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843111615 472 0.945 -5.531 3.614 1.551 -3.618 0.609 0.3843109887 484 0.945 -5.531 3.627 1.551 -3.618 0.609 0.3842697066 486 0.945 -5.531 3.626 1.551 -3.618 0.609 0.3842689984 487 0.945 -5.531 3.625 1.551 -3.618 0.609 0.3842689165 497 0.945 -5.531 3.625 1.556 -3.618 0.609 0.3842677711 498 0.945 -5.531 3.625 1.554 -3.618 0.609 0.3842664342 507 0.945 -5.531 3.625 1.554 -3.586 0.609 0.3839528557 509 0.945 -5.531 3.625 1.554 -3.588 0.609 0.3839440941 510 0.945 -5.531 3.625 1.554 -3.591 0.609 0.3839416583 519 0.936 -5.530 3.620 1.557 -3.589 0.598 0.3839312125 520 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839291804 521 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839290531 535 0.920 -5.530 3.621 1.556 -3.590 0.601 0.3838190626 537 0.924 -5.530 3.621 1.556 -3.590 0.601 0.3838120151 549 0.924 -5.529 3.621 1.557 -3.590 0.601 0.3838119734 561 0.924 -5.529 3.631 1.557 -3.590 0.601 0.3837873452 580 0.924 -5.529 3.631 1.557 -3.572 0.601 0.3836780501 591 0.921 -5.528 3.630 1.557 -3.572 0.598 0.3836757641 592 0.921 -5.528 3.630 1.557 -3.572 0.597 0.3836755656 597 0.903 -5.527 3.638 1.559 -3.554 0.594 0.3835845407 604 0.895 -5.526 3.642 1.560 -3.546 0.592 0.3835794654 605 0.896 -5.526 3.641 1.560 -3.547 0.592 0.3835790712 606 0.897 -5.526 3.641 1.560 -3.548 0.593 0.3835789605 638 0.897 -5.510 3.638 1.571 -3.547 0.591 0.3835787626 639 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835746439 640 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835745538 642 0.897 -5.519 3.640 1.564 -3.548 0.593 0.3835743974 643 0.897 -5.520 3.640 1.564 -3.548 0.593 0.3835743327 651 0.897 -5.520 3.639 1.564 -3.548 0.593 0.3835741199 652 0.897 -5.520 3.638 1.564 -3.548 0.593 0.3835739882 654 0.897 -5.520 3.636 1.564 -3.548 0.593 0.3835739332 664 0.897 -5.520 3.636 1.563 -3.548 0.593 0.3835739007 674 0.897 -5.520 3.636 1.563 -3.547 0.593 0.3835737421 681 0.891 -5.519 3.639 1.564 -3.540 0.591 0.3835719195 682 0.893 -5.519 3.638 1.563 -3.542 0.592 0.3835711657 692 0.894 -5.519 3.638 1.563 -3.543 0.592 0.3835711591 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 1.013153 1 -25.0 -25.0 25.0 1.058806 2 -25.0 25.0 -25.0 1.045570 3 -25.0 25.0 25.0 1.063901 4 25.0 -25.0 -25.0 1.063232 5 25.0 -25.0 25.0 1.062666 6 25.0 25.0 -25.0 1.063291 7 25.0 25.0 25.0 1.068569 REL: 8 0.383571 8.439189 1.054899 rel = 0.36361 Number of iterations 7 Min cost was 0.383571 Number of FunctionCalls 693 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.949000 sec Parameters at optimum (transmm) 0.89362 -5.51934 3.63786 Parameters at optimum (rotdeg) 1.56335 -3.54278 0.59184 Costs at optimum 2281 0.6628 0.2750 31.6000 0.8341 0.3142 22.0390 0.3836 Reg at min cost was 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat, type = 14 Original Reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.002 -0.062 0.012 -1.224; -0.012 -0.027 0.000 5.439; -0.062 0.001 -0.027 -3.268; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 7.081879 Computing change in rh position Surface RMS Diff (mm) 7.652021 10.099015 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.92363/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1368861567 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.017659 1 -25.0 -25.0 25.0 1.065419 2 -25.0 25.0 -25.0 1.016386 3 -25.0 25.0 25.0 1.050450 4 25.0 -25.0 -25.0 1.033962 5 25.0 -25.0 25.0 1.049765 6 25.0 25.0 -25.0 1.043729 7 25.0 25.0 25.0 1.070996 REL: 8 0.399041 8.348366 1.043546 rel = 0.38239 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9932 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.3824 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3932 0.3932 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.3896 0.3896 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.3882 0.3882 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.3864 0.3864 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.3862 0.3862 0.0 97 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.0000 0.3849 0.3849 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.3843 0.3843 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3836 0.3836 0.0 Brute Force -------------------------- Min cost was 0.383571 Number of iterations 729 Search time 0.977000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.143 0.000 0.000 0.000 0.000 0.000 0.3985947477 8 -0.127 0.000 0.000 0.000 0.000 0.000 0.3985907563 9 -0.131 0.000 0.000 0.000 0.000 0.000 0.3985902996 10 -0.132 0.000 0.000 0.000 0.000 0.000 0.3985902464 12 -0.133 0.000 0.000 0.000 0.000 0.000 0.3985901829 21 -0.133 0.031 0.000 0.000 0.000 0.000 0.3985422208 23 -0.133 0.025 0.000 0.000 0.000 0.000 0.3985384925 33 -0.133 0.024 0.382 0.000 0.000 0.000 0.3955914377 34 -0.133 0.024 0.329 0.000 0.000 0.000 0.3953062478 35 -0.133 0.024 0.288 0.000 0.000 0.000 0.3952498224 36 -0.133 0.024 0.293 0.000 0.000 0.000 0.3952468267 37 -0.133 0.024 0.296 0.000 0.000 0.000 0.3952464652 38 -0.133 0.024 0.295 0.000 0.000 0.000 0.3952464194 46 -0.133 0.024 0.295 0.123 0.000 0.000 0.3947974507 47 -0.133 0.024 0.295 0.120 0.000 0.000 0.3947944283 48 -0.133 0.024 0.295 0.111 0.000 0.000 0.3947922155 50 -0.133 0.024 0.295 0.113 0.000 0.000 0.3947918104 59 -0.133 0.024 0.295 0.114 0.108 0.000 0.3943948822 61 -0.133 0.024 0.295 0.114 0.091 0.000 0.3943800512 62 -0.133 0.024 0.295 0.114 0.092 0.000 0.3943798743 68 -0.133 0.024 0.295 0.114 0.092 -0.618 0.3892245715 70 -0.133 0.024 0.295 0.114 0.092 -0.504 0.3888437663 71 -0.133 0.024 0.295 0.114 0.092 -0.476 0.3888042851 83 -0.193 0.024 0.295 0.114 0.092 -0.476 0.3887751147 84 -0.170 0.024 0.295 0.114 0.092 -0.476 0.3887445973 85 -0.168 0.024 0.295 0.114 0.092 -0.476 0.3887434349 86 -0.161 0.024 0.295 0.114 0.092 -0.476 0.3887419289 88 -0.163 0.024 0.295 0.114 0.092 -0.476 0.3887418978 97 -0.163 0.096 0.295 0.114 0.092 -0.476 0.3884674076 99 -0.163 0.088 0.295 0.114 0.092 -0.476 0.3884628102 100 -0.163 0.087 0.295 0.114 0.092 -0.476 0.3884627619 108 -0.163 0.087 0.321 0.114 0.092 -0.476 0.3884140214 110 -0.163 0.087 0.326 0.114 0.092 -0.476 0.3884128733 119 -0.163 0.087 0.326 0.140 0.092 -0.476 0.3883672079 121 -0.163 0.087 0.326 0.143 0.092 -0.476 0.3883671635 123 -0.163 0.087 0.326 0.142 0.092 -0.476 0.3883671225 130 -0.163 0.087 0.326 0.142 0.224 -0.476 0.3878621347 131 -0.163 0.087 0.326 0.142 0.223 -0.476 0.3878612206 132 -0.163 0.087 0.326 0.142 0.211 -0.476 0.3878570950 144 -0.163 0.087 0.326 0.142 0.212 -0.500 0.3878281938 145 -0.163 0.087 0.326 0.142 0.212 -0.503 0.3878266281 147 -0.163 0.087 0.326 0.142 0.212 -0.506 0.3878262535 148 -0.163 0.087 0.326 0.142 0.212 -0.505 0.3878261972 150 -0.193 0.150 0.357 0.170 0.332 -0.534 0.3877013446 157 -0.181 0.125 0.345 0.159 0.285 -0.523 0.3875830306 159 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875815549 160 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875814980 172 -0.276 0.128 0.346 0.160 0.290 -0.524 0.3873284729 175 -0.284 0.128 0.346 0.160 0.290 -0.524 0.3873265784 176 -0.282 0.128 0.346 0.160 0.290 -0.524 0.3873261847 185 -0.282 0.121 0.346 0.160 0.290 -0.524 0.3873226515 196 -0.282 0.121 0.383 0.160 0.290 -0.524 0.3873106524 198 -0.282 0.121 0.367 0.160 0.290 -0.524 0.3872954561 200 -0.282 0.121 0.366 0.160 0.290 -0.524 0.3872954399 210 -0.282 0.121 0.366 0.156 0.290 -0.524 0.3872940597 211 -0.282 0.121 0.366 0.155 0.290 -0.524 0.3872939981 219 -0.282 0.121 0.366 0.155 0.290 -0.592 0.3872110852 220 -0.282 0.121 0.366 0.155 0.290 -0.580 0.3872086302 222 -0.282 0.121 0.366 0.155 0.290 -0.579 0.3872086258 231 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084376 235 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084272 237 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872082552 246 -0.285 0.123 0.367 0.156 0.293 -0.580 0.3872077911 250 -0.298 0.123 0.367 0.156 0.293 -0.580 0.3872053814 252 -0.297 0.123 0.367 0.156 0.293 -0.580 0.3872053607 260 -0.297 0.124 0.367 0.156 0.293 -0.580 0.3872044882 261 -0.297 0.132 0.367 0.156 0.293 -0.580 0.3872009406 264 -0.297 0.131 0.367 0.156 0.293 -0.580 0.3872009379 275 -0.297 0.131 0.365 0.156 0.293 -0.580 0.3872008005 284 -0.297 0.131 0.365 0.168 0.293 -0.580 0.3871989623 286 -0.297 0.131 0.365 0.163 0.293 -0.580 0.3871976771 297 -0.297 0.131 0.365 0.163 0.293 -0.583 0.3871975995 306 -0.296 0.129 0.364 0.162 0.289 -0.581 0.3871926752 307 -0.291 0.118 0.359 0.157 0.268 -0.576 0.3871920010 309 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871863782 311 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871862269 324 -0.301 0.123 0.361 0.160 0.278 -0.579 0.3871855990 325 -0.299 0.123 0.361 0.160 0.278 -0.579 0.3871851294 334 -0.299 0.124 0.361 0.160 0.278 -0.579 0.3871842671 335 -0.299 0.133 0.361 0.160 0.278 -0.579 0.3871818538 337 -0.299 0.131 0.361 0.160 0.278 -0.579 0.3871814371 347 -0.299 0.131 0.358 0.160 0.278 -0.579 0.3871805819 358 -0.299 0.131 0.358 0.164 0.278 -0.579 0.3871793024 359 -0.299 0.131 0.358 0.165 0.278 -0.579 0.3871792906 368 -0.299 0.131 0.358 0.165 0.278 -0.583 0.3871789270 369 -0.299 0.131 0.358 0.165 0.278 -0.582 0.3871789071 370 -0.299 0.131 0.358 0.165 0.278 -0.581 0.3871786252 380 -0.297 0.128 0.357 0.163 0.273 -0.580 0.3871780292 382 -0.297 0.129 0.357 0.164 0.273 -0.580 0.3871779151 397 -0.296 0.129 0.357 0.164 0.273 -0.580 0.3871779108 405 -0.296 0.135 0.357 0.164 0.273 -0.580 0.3871773556 407 -0.296 0.132 0.357 0.164 0.273 -0.580 0.3871768371 428 -0.296 0.132 0.357 0.165 0.273 -0.580 0.3871767962 429 -0.296 0.132 0.357 0.166 0.273 -0.580 0.3871767886 438 -0.296 0.132 0.357 0.166 0.273 -0.584 0.3871764837 449 -0.296 0.132 0.356 0.166 0.272 -0.582 0.3871764773 453 -0.296 0.132 0.357 0.166 0.273 -0.582 0.3871764492 455 -0.295 0.135 0.356 0.168 0.272 -0.585 0.3871762311 462 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761684 468 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761649 469 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761602 503 -0.295 0.135 0.355 0.168 0.272 -0.584 0.3871761349 531 -0.295 0.136 0.355 0.167 0.272 -0.585 0.3871760497 534 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 539 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 575 -0.295 0.136 0.356 0.167 0.272 -0.586 0.3871759713 610 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759616 611 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759518 633 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759358 643 -0.295 0.136 0.355 0.168 0.272 -0.586 0.3871759350 Powell done niters = 8 Computing relative cost 0 -25.0 -25.0 -25.0 1.018295 1 -25.0 -25.0 25.0 1.065241 2 -25.0 25.0 -25.0 1.020058 3 -25.0 25.0 25.0 1.055383 4 25.0 -25.0 -25.0 1.036075 5 25.0 -25.0 25.0 1.050567 6 25.0 25.0 -25.0 1.043855 7 25.0 25.0 25.0 1.069080 REL: 8 0.387176 8.358553 1.044819 rel = 0.370567 Number of iterations 8 Min cost was 0.387176 Number of FunctionCalls 682 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 88.160000 sec Parameters at optimum (transmm) -0.29477 0.13618 0.35526 Parameters at optimum (rotdeg) 0.16728 0.27177 -0.58568 Costs at optimum 227537 0.6571 0.2657 30.3707 0.8299 0.3070 22.3892 0.3872 Reg at min cost was 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.004 -0.010 0.455; 0.010 -0.003 0.000 -0.141; 0.005 -0.000 -0.003 -0.311; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.693981 Computing change in rh position Surface RMS Diff (mm) 0.610632 1.160309 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Mon May 13 09:51:54 CDT 2013 Ended at Mon May 13 09:54:25 CDT 2013 BBR-Run-Time-Sec 151 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Mon May 13 09:54:25 CDT 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Mon May 13 09:57:16 CDT 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 420047 values in range Counting number of voxels Found 420047 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 442102 values in range Counting number of voxels Found 442102 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 18636 values in range Counting number of voxels Found 18636 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838430 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 10 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 4.000000 4 k 753.000000 5 k 1.000000 6 k 6.000000 7 k 1.000000 8 k 1.000000 9 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 6.000000 2 k 2.000000 3 k 1.000000 4 k 722.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 444728 values in range Counting number of voxels Found 444728 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 696836 values in range Counting number of voxels Found 696836 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 16976 values in range Counting number of voxels Found 16976 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask-vent.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_snr.txt flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour #------------------------------------- #@# Tensor fit Mon May 13 10:03:48 CDT 2013 dtifit -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -m /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs -b /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals -o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit 0 64 0 64 0 30 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Mon May 13 10:04:30 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.89330.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.89330.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.89330.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 898 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 5062 total streamlines (min/mean/max length: 62/100/132) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2859 non-truncated streamlines (min/mean/max length: 65/100/132) INFO: Center of mass of start points: (97+/-4, 98+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 76+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34329 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 98 32 100 105 47 113 110 86 113 105 121 114 105 141 INFO: Distances between consecutive points are 17 41 35 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 204.418 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 929 streamlines for straying off mask INFO: Rejected 889 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4245 total streamlines (min/mean/max length: 50/97/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2597 non-truncated streamlines (min/mean/max length: 52/97/137) INFO: Center of mass of start points: (78+/-8, 100+/-9, 68+/-45) INFO: Center of mass of midpoints: (81+/-3, 99+/-6, 46+/-14) INFO: Center of mass of end points: (71+/-10, 102+/-9, 115+/-44) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 36155 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 98 36 73 108 61 63 111 88 68 103 139 67 103 146 INFO: Distances between consecutive points are 29 29 52 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 138.942 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 246 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2078 total streamlines (min/mean/max length: 44/87/121) Processing pathway 3 of 18... Matching streamline ends INFO: Have 794 non-truncated streamlines (min/mean/max length: 51/96/121) INFO: Center of mass of start points: (124+/-15, 100+/-44, 50+/-15) INFO: Center of mass of midpoints: (133+/-5, 129+/-3, 43+/-6) INFO: Center of mass of end points: (120+/-15, 75+/-43, 62+/-18) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23586 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 133 40 133 110 55 131 86 63 118 64 71 107 49 56 INFO: Distances between consecutive points are 28 25 27 24 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 137 133 40 134 110 54 131 86 63 118 64 71 107 48 56 INFO: Distances between consecutive points are 27 26 27 25 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 138 133 40 130 85 63 121 67 70 109 49 67 107 48 56 INFO: Distances between consecutive points are 54 21 22 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 53.173 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 131 streamlines for straying off mask INFO: Rejected 25 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1111 total streamlines (min/mean/max length: 52/92/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 486 non-truncated streamlines (min/mean/max length: 58/103/123) INFO: Center of mass of start points: (53+/-11, 124+/-36, 43+/-13) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 41+/-5) INFO: Center of mass of end points: (65+/-13, 59+/-36, 68+/-18) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 19323 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 110 57 50 86 65 64 59 75 70 40 59 INFO: Distances between consecutive points are 32 25 32 26 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 112 56 49 87 66 61 62 75 71 40 64 INFO: Distances between consecutive points are 29 27 29 27 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 124 49 45 99 59 54 74 71 73 45 75 INFO: Distances between consecutive points are 24 27 29 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 39 49 115 53 49 90 61 61 67 75 77 40 78 INFO: Distances between consecutive points are 26 26 29 32 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 46 147 42 48 125 48 45 100 58 53 76 69 66 50 73 INFO: Distances between consecutive points are 23 27 28 29 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 136 40 48 124 46 50 87 64 67 55 77 77 40 78 INFO: Distances between consecutive points are 15 41 38 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 70.903 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 4212 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 58 total streamlines (min/mean/max length: 1/14/32) Processing pathway 5 of 18... Matching streamline ends INFO: Have 29 non-truncated streamlines (min/mean/max length: 10/13/21) INFO: Center of mass of start points: (125+/-1, 132+/-4, 47+/-6) INFO: Center of mass of midpoints: (126+/-2, 131+/-2, 47+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 51+/-5) INFO: Split streamlines into 3 segments Computing path histograms INFO: Total streamline volume is 442 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 130 50 126 128 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 125 126 51 123 126 48 122 128 45 120 130 43 INFO: Distances between consecutive points are 3 4 4 3 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 127 50 131 132 49 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 125 132 45 125 130 48 126 129 51 126 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 128 54 126 129 51 126 130 49 126 131 47 125 135 43 INFO: Distances between consecutive points are 3 2 2 6 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 129 50 126 128 54 INFO: Distances between consecutive points are 2 2 4 4 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 45 126 132 47 126 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 126 132 45 126 130 48 127 129 51 127 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 44 125 133 45 125 132 47 125 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 45 124 133 45 126 131 47 127 129 49 127 128 54 INFO: Distances between consecutive points are 2 3 3 5 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 46 125 131 48 126 130 50 126 129 54 INFO: Distances between consecutive points are 3 3 2 4 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 130 52 126 130 50 125 131 48 125 134 44 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 45 124 132 46 125 130 47 126 129 49 127 129 54 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 129 52 126 130 50 126 131 48 125 135 44 INFO: Distances between consecutive points are 2 2 2 6 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 125 132 45 125 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 44 124 131 45 126 129 48 126 128 51 127 128 54 INFO: Distances between consecutive points are 3 4 3 3 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 132 45 125 131 47 125 130 49 125 129 54 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 131 46 124 130 48 125 129 51 125 128 54 INFO: Distances between consecutive points are 4 2 3 3 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 124 132 45 124 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 129 54 127 129 52 127 130 50 127 131 48 125 136 44 INFO: Distances between consecutive points are 2 2 2 7 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 135 43 126 132 45 127 130 48 128 128 52 127 127 55 INFO: Distances between consecutive points are 4 4 5 3 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 43 124 130 46 125 128 49 125 127 51 126 126 56 INFO: Distances between consecutive points are 4 4 2 5 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 122 133 42 124 130 45 125 128 48 125 127 51 126 126 55 INFO: Distances between consecutive points are 5 4 3 4 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 55 126 128 53 126 128 51 126 129 49 127 133 48 INFO: Distances between consecutive points are 2 2 2 4 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 136 46 126 134 48 127 132 49 127 130 51 127 129 54 INFO: Distances between consecutive points are 3 2 3 3 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 15 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 127 126 53 127 127 50 128 130 47 130 135 47 INFO: Distances between consecutive points are 3 3 4 5 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 126 126 52 126 127 47 126 129 43 124 133 40 INFO: Distances between consecutive points are 4 5 4 5 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 125 57 127 124 53 128 125 49 129 129 44 130 133 42 INFO: Distances between consecutive points are 4 4 6 5 WARN: Could not find satisfactory control point fit - try 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 22.182 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 669 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 4 streamlines as length outliers INFO: Have 4972 total streamlines (min/mean/max length: 9/64/102) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3858 non-truncated streamlines (min/mean/max length: 9/65/102) INFO: Center of mass of start points: (59+/-11, 151+/-14, 47+/-8) INFO: Center of mass of midpoints: (53+/-4, 133+/-2, 44+/-3) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 20129 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 133 44 57 129 59 75 159 62 77 172 59 INFO: Distances between consecutive points are 13 16 35 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 99.21 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 3142 streamlines for straying off mask INFO: Rejected 182 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 4120 total streamlines (min/mean/max length: 80/129/158) Processing pathway 7 of 18... Matching streamline ends INFO: Have 3167 non-truncated streamlines (min/mean/max length: 80/131/158) INFO: Center of mass of start points: (89+/-15, 40+/-11, 100+/-16) INFO: Center of mass of midpoints: (106+/-5, 45+/-10, 94+/-13) INFO: Center of mass of end points: (87+/-16, 40+/-10, 101+/-16) INFO: Split streamlines into 33 segments Computing path histograms INFO: Total streamline volume is 49457 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 54 86 95 89 84 63 67 87 72 39 109 INFO: Distances between consecutive points are 34 41 39 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 60 66 92 89 91 83 116 64 89 98 37 104 INFO: Distances between consecutive points are 32 39 39 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 65 91 88 91 83 116 65 90 98 36 103 INFO: Distances between consecutive points are 33 40 39 37 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 37 104 116 61 88 91 90 82 60 67 92 77 41 103 INFO: Distances between consecutive points are 34 39 40 33 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 63 86 90 90 83 62 65 88 77 39 110 INFO: Distances between consecutive points are 36 39 38 37 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 59 65 92 91 91 83 117 61 88 98 34 103 INFO: Distances between consecutive points are 33 42 40 36 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 59 66 92 90 91 83 117 62 89 98 36 103 INFO: Distances between consecutive points are 34 41 40 35 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 66 88 91 89 84 116 60 89 98 45 116 INFO: Distances between consecutive points are 36 36 39 36 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 89 89 84 116 62 88 97 45 116 INFO: Distances between consecutive points are 36 35 38 38 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 59 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 61 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 157 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 36 109 120 60 86 91 93 84 58 66 89 79 39 104 INFO: Distances between consecutive points are 37 44 43 37 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 72 38 109 INFO: Distances between consecutive points are 32 36 38 33 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 37 101 116 62 89 92 89 85 63 71 87 72 41 104 INFO: Distances between consecutive points are 30 36 34 36 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 91 89 83 115 61 89 98 45 116 INFO: Distances between consecutive points are 36 36 37 36 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 90 89 83 114 62 88 98 45 114 INFO: Distances between consecutive points are 36 36 36 35 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 63 71 86 93 86 82 118 60 87 98 38 111 INFO: Distances between consecutive points are 37 34 36 38 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 64 86 90 93 84 58 69 88 78 39 101 INFO: Distances between consecutive points are 39 42 40 38 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 72 37 103 INFO: Distances between consecutive points are 31 35 34 37 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 64 78 86 99 89 83 120 58 86 102 38 109 INFO: Distances between consecutive points are 36 37 38 35 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 64 84 99 37 105 INFO: Distances between consecutive points are 38 36 36 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 108 113 63 89 89 90 86 62 66 92 73 42 97 INFO: Distances between consecutive points are 33 36 37 27 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 36 104 116 62 84 92 88 81 63 67 84 75 36 103 INFO: Distances between consecutive points are 37 36 36 38 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 63 85 99 41 105 INFO: Distances between consecutive points are 32 33 33 34 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 75 44 93 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 73 44 106 INFO: Distances between consecutive points are 31 35 34 33 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 35 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 97 90 83 63 77 87 74 44 92 INFO: Distances between consecutive points are 37 39 37 35 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 98 89 83 120 60 86 95 40 104 INFO: Distances between consecutive points are 36 36 37 37 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 35 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 114 62 85 95 90 84 66 72 87 81 44 87 INFO: Distances between consecutive points are 35 34 34 32 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 35 31 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 62 84 99 37 105 INFO: Distances between consecutive points are 38 35 37 37 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 65 84 99 37 104 INFO: Distances between consecutive points are 38 35 35 38 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 117 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 91 86 82 63 69 86 74 39 101 INFO: Distances between consecutive points are 31 35 33 35 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 62 75 87 94 91 83 120 65 86 100 40 102 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 38 103 INFO: Distances between consecutive points are 41 39 41 43 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 69 87 90 90 84 116 68 85 102 41 106 INFO: Distances between consecutive points are 30 33 34 37 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 63 84 99 36 103 INFO: Distances between consecutive points are 38 36 37 37 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 64 84 83 90 82 118 71 88 93 38 103 INFO: Distances between consecutive points are 40 38 40 44 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 41 95 62 75 86 95 91 82 119 62 85 94 40 104 INFO: Distances between consecutive points are 39 37 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 40 104 56 66 85 85 90 83 119 69 89 94 42 105 INFO: Distances between consecutive points are 40 38 40 40 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 67 85 85 90 82 119 68 89 93 39 104 INFO: Distances between consecutive points are 41 37 41 42 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 63 67 84 86 92 84 114 72 89 100 37 87 INFO: Distances between consecutive points are 35 34 35 38 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 55 66 84 84 91 83 119 70 89 94 39 104 INFO: Distances between consecutive points are 42 38 41 43 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 60 86 98 89 82 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 36 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 60 84 102 34 102 INFO: Distances between consecutive points are 39 36 38 35 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 57 88 90 86 85 60 64 90 73 36 104 INFO: Distances between consecutive points are 30 37 38 34 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 103 63 67 84 93 88 81 117 61 84 98 35 103 INFO: Distances between consecutive points are 38 37 36 37 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 36 102 61 64 89 86 87 85 112 62 89 99 35 100 INFO: Distances between consecutive points are 33 34 36 32 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 99 89 82 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 61 63 89 85 87 85 111 63 88 99 35 100 INFO: Distances between consecutive points are 33 34 36 33 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 105 115 63 90 87 89 82 60 63 84 79 32 88 INFO: Distances between consecutive points are 30 39 38 37 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 66 88 88 91 83 55 69 85 80 39 98 INFO: Distances between consecutive points are 42 41 40 41 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 97 90 82 120 63 85 98 34 99 INFO: Distances between consecutive points are 36 35 36 39 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 67 88 88 91 83 55 69 85 80 39 97 INFO: Distances between consecutive points are 42 40 40 41 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 104 119 65 88 89 90 82 56 71 85 80 39 97 INFO: Distances between consecutive points are 41 40 38 42 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 90 87 84 61 64 89 73 35 102 INFO: Distances between consecutive points are 32 35 37 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 93 88 81 117 61 83 98 34 102 INFO: Distances between consecutive points are 38 37 36 38 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 56 88 92 85 85 61 66 90 75 37 107 INFO: Distances between consecutive points are 29 35 37 36 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 103 64 68 82 91 90 81 117 63 84 98 35 103 INFO: Distances between consecutive points are 39 35 38 39 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 116 59 84 97 86 81 66 74 85 79 43 101 INFO: Distances between consecutive points are 36 33 33 37 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 115 60 92 92 86 85 61 71 92 73 37 96 INFO: Distances between consecutive points are 32 35 35 36 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 38 98 55 67 84 84 91 83 118 71 89 94 42 106 INFO: Distances between consecutive points are 41 38 40 41 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 91 87 84 62 67 89 74 36 102 INFO: Distances between consecutive points are 32 35 36 36 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 62 83 98 34 102 INFO: Distances between consecutive points are 39 36 36 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 104 115 60 92 93 86 85 61 73 92 72 38 100 INFO: Distances between consecutive points are 32 35 35 38 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 58 88 92 86 84 61 66 89 74 36 103 INFO: Distances between consecutive points are 30 34 37 36 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 116 63 93 90 87 86 59 69 93 72 39 109 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 33 100 117 61 84 95 90 81 64 70 81 75 36 104 INFO: Distances between consecutive points are 36 37 37 42 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 119 63 88 94 90 83 60 79 86 72 42 93 INFO: Distances between consecutive points are 39 37 36 40 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 44 101 64 72 83 97 88 81 116 59 84 98 34 103 INFO: Distances between consecutive points are 37 37 35 36 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 36 92 119 70 88 80 90 82 57 62 84 80 39 97 INFO: Distances between consecutive points are 42 44 36 35 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 2229.73 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 1207 streamlines for straying off mask INFO: Rejected 351 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 13034 total streamlines (min/mean/max length: 51/83/109) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10164 non-truncated streamlines (min/mean/max length: 53/85/112) INFO: Center of mass of start points: (91+/-13, 186+/-6, 76+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 44863 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 85 191 81 72 166 72 93 154 76 109 169 71 101 182 78 INFO: Distances between consecutive points are 30 25 22 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 726.805 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 84 streamlines for straying off mask INFO: Rejected 13 streamlines for reversing direction INFO: Rejected 32 streamlines as length outliers INFO: Have 8985 total streamlines (min/mean/max length: 30/58/86) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3541 non-truncated streamlines (min/mean/max length: 37/67/85) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-14, 150+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 32785 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 119 80 101 127 78 108 140 78 111 173 70 107 181 67 INFO: Distances between consecutive points are 9 15 34 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 299.889 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 164 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 7551 total streamlines (min/mean/max length: 31/60/87) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3430 non-truncated streamlines (min/mean/max length: 42/68/87) INFO: Center of mass of start points: (71+/-11, 166+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 29975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 75 194 84 77 190 83 67 165 76 68 148 80 83 116 76 INFO: Distances between consecutive points are 5 28 17 36 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 242.826 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 1937 streamlines for straying off mask INFO: Rejected 17 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1132 total streamlines (min/mean/max length: 1/33/72) Processing pathway 11 of 18... Matching streamline ends INFO: Have 475 non-truncated streamlines (min/mean/max length: 14/38/70) INFO: Center of mass of start points: (116+/-5, 106+/-12, 50+/-10) INFO: Center of mass of midpoints: (109+/-4, 85+/-2, 70+/-3) INFO: Center of mass of end points: (111+/-6, 81+/-12, 74+/-12) INFO: Split streamlines into 7 segments Computing path histograms INFO: Total streamline volume is 6794 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 31 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 118 108 45 117 105 48 110 95 61 109 87 68 109 82 73 INFO: Distances between consecutive points are 4 18 11 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 11.989 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 326 streamlines for straying off mask INFO: Rejected 101 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2619 total streamlines (min/mean/max length: 11/40/99) Processing pathway 12 of 18... Matching streamline ends INFO: Have 855 non-truncated streamlines (min/mean/max length: 13/46/99) INFO: Center of mass of start points: (63+/-4, 114+/-14, 47+/-10) INFO: Center of mass of midpoints: (70+/-4, 87+/-2, 70+/-3) INFO: Center of mass of end points: (69+/-5, 82+/-12, 78+/-12) INFO: Split streamlines into 9 segments Computing path histograms INFO: Total streamline volume is 12804 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 57 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 62 123 41 67 115 42 67 111 43 70 83 74 66 72 80 INFO: Distances between consecutive points are 9 4 42 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 19.076 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4065 total streamlines (min/mean/max length: 27/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2431 non-truncated streamlines (min/mean/max length: 27/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-4, 105+/-2) INFO: Center of mass of end points: (99+/-4, 97+/-30, 102+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 157 87 97 141 95 97 125 102 98 100 104 101 83 103 INFO: Distances between consecutive points are 18 17 25 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 74.265 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 118 streamlines for straying off mask INFO: Rejected 1 streamlines for reversing direction INFO: Rejected 25 streamlines as length outliers INFO: Have 3528 total streamlines (min/mean/max length: 29/62/125) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2234 non-truncated streamlines (min/mean/max length: 30/65/125) INFO: Center of mass of start points: (81+/-4, 119+/-33, 99+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16105 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 145 96 83 136 102 82 112 104 76 82 104 77 74 106 INFO: Distances between consecutive points are 11 24 31 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 48.454 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 564 streamlines for straying off mask INFO: Rejected 250 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5750 total streamlines (min/mean/max length: 23/58/100) Processing pathway 15 of 18... Matching streamline ends INFO: Have 2878 non-truncated streamlines (min/mean/max length: 30/65/100) INFO: Center of mass of start points: (143+/-8, 113+/-21, 99+/-13) INFO: Center of mass of midpoints: (131+/-6, 118+/-3, 99+/-5) INFO: Center of mass of end points: (144+/-8, 98+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 37225 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 129 104 128 115 100 129 89 102 137 86 106 144 88 113 INFO: Distances between consecutive points are 23 26 9 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 140.115 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 637 streamlines for straying off mask INFO: Rejected 476 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 8195 total streamlines (min/mean/max length: 20/62/124) Processing pathway 16 of 18... Matching streamline ends INFO: Have 3949 non-truncated streamlines (min/mean/max length: 27/68/125) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-2, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 48752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 135 103 35 131 100 52 119 100 53 81 101 41 74 115 INFO: Distances between consecutive points are 6 21 38 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 297.073 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 625 streamlines for straying off mask INFO: Rejected 34 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3430 total streamlines (min/mean/max length: 34/86/148) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2415 non-truncated streamlines (min/mean/max length: 37/89/148) INFO: Center of mass of start points: (144+/-7, 105+/-26, 77+/-17) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (144+/-7, 108+/-26, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 30284 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 92 61 137 85 65 122 79 94 126 104 103 138 122 96 INFO: Distances between consecutive points are 14 33 27 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 78.103 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 165 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1652 total streamlines (min/mean/max length: 30/85/128) Processing pathway 18 of 18... Matching streamline ends INFO: Have 992 non-truncated streamlines (min/mean/max length: 57/89/128) INFO: Center of mass of start points: (36+/-8, 114+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-8, 101+/-28, 81+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 21265 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 31 132 105 53 118 104 54 96 105 53 79 90 36 79 67 INFO: Distances between consecutive points are 26 22 23 29 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 30 130 106 53 117 104 54 92 104 53 78 89 36 79 67 INFO: Distances between consecutive points are 26 25 21 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 40.647 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.89330.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.89330.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr Training subject directory list: /private/tmp/subj23.freesurfer.89330.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 928 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 5020 total streamlines (min/mean/max length: 63/100/130) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2639 non-truncated streamlines (min/mean/max length: 66/100/133) INFO: Center of mass of start points: (97+/-4, 99+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 77+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 33771 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 96 98 30 100 105 46 112 112 76 112 106 120 112 111 145 INFO: Distances between consecutive points are 18 33 44 25 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 200.858 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1040 streamlines for straying off mask INFO: Rejected 726 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4297 total streamlines (min/mean/max length: 51/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2557 non-truncated streamlines (min/mean/max length: 53/97/136) INFO: Center of mass of start points: (78+/-8, 100+/-9, 67+/-45) INFO: Center of mass of midpoints: (81+/-3, 100+/-6, 45+/-13) INFO: Center of mass of end points: (71+/-10, 102+/-9, 114+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 35942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 102 37 78 102 41 76 106 58 65 111 82 69 103 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 142.39 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 299 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 2031 total streamlines (min/mean/max length: 43/87/118) Processing pathway 3 of 18... Matching streamline ends INFO: Have 759 non-truncated streamlines (min/mean/max length: 49/95/118) INFO: Center of mass of start points: (125+/-14, 103+/-43, 48+/-14) INFO: Center of mass of midpoints: (133+/-5, 130+/-2, 43+/-5) INFO: Center of mass of end points: (120+/-14, 73+/-42, 61+/-17) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23094 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 134 129 43 133 101 62 132 85 67 120 64 73 113 43 67 INFO: Distances between consecutive points are 34 17 25 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 30.703 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 163 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1084 total streamlines (min/mean/max length: 52/93/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 446 non-truncated streamlines (min/mean/max length: 58/101/126) INFO: Center of mass of start points: (53+/-11, 123+/-36, 43+/-14) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 40+/-5) INFO: Center of mass of end points: (64+/-13, 61+/-37, 69+/-19) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 19350 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 126 50 44 98 60 56 70 73 75 41 76 INFO: Distances between consecutive points are 22 30 33 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 51 149 44 52 140 43 46 111 52 59 56 73 66 44 82 INFO: Distances between consecutive points are 9 31 60 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 38.437 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 4221 streamlines for straying off mask INFO: Rejected 2 streamlines for reversing direction INFO: Rejected 9 streamlines as length outliers INFO: Have 56 total streamlines (min/mean/max length: 1/13/33) Processing pathway 5 of 18... Matching streamline ends INFO: Have 27 non-truncated streamlines (min/mean/max length: 1/11/20) INFO: Center of mass of start points: (126+/-2, 132+/-3, 47+/-5) INFO: Center of mass of midpoints: (126+/-2, 131+/-1, 46+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 50+/-5) INFO: Split streamlines into 1 segments Computing path histograms INFO: Total streamline volume is 409 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 42 124 130 45 125 128 49 125 127 52 126 127 55 INFO: Distances between consecutive points are 4 5 3 3 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 130 135 45 130 132 46 129 129 46 128 127 49 128 126 55 INFO: Distances between consecutive points are 3 3 4 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 128 50 131 133 48 INFO: Distances between consecutive points are 3 2 3 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 127 125 53 128 125 49 129 127 46 130 134 42 INFO: Distances between consecutive points are 3 4 4 8 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 20 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 132 38 127 129 42 127 127 46 128 125 50 126 125 57 INFO: Distances between consecutive points are 5 4 5 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 126 126 52 125 126 50 123 127 48 121 130 43 INFO: Distances between consecutive points are 2 2 3 6 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 2 voxels Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Mon May 13 11:37:48 CDT 2013 New invocation of trac-all Mon May 13 14:04:39 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 802M wired, 7639M active, 430M inactive, 8870M used, 3395M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/13-19:04:40-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-19:04:40-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-19:04:40-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-19:04:41-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-19:04:41-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 808M wired, 7639M active, 427M inactive, 8874M used, 3394M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mon May 13 14:04:43 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0003 New invocation of trac-all Mon May 13 16:42:32 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 695M wired, 8235M active, 328M inactive, 9259M used, 3015M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/13-21:42:33-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:33-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:33-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:33-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:33-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 696M wired, 8237M active, 329M inactive, 9261M used, 3014M free. New invocation of trac-all Mon May 13 16:42:47 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 696M wired, 8184M active, 329M inactive, 9209M used, 3062M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/13-21:42:48-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:48-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:48-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:48-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/13-21:42:49-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 698M wired, 8183M active, 329M inactive, 9210M used, 3061M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Mon May 13 16:42:51 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Mon May 13 16:45:32 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Mon May 13 16:46:16 CDT 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /usr/local/freesurfer5.1 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister --dof 6 Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fslregister.log Mon May 13 16:46:17 CDT 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister --dof 6 $Id: fslregister,v 1.29.2.1 2010/08/04 15:50:56 nicks Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii... /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/reg0.35074.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/reg0.35074.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Mon May 13 16:46:22 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/fslregister/movvol.fslregister.nii -bins 256 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fsl.mat -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -schedule /usr/local/freesurfer5.1/bin/flirt.newdefault.20080811.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fsl.mat0 tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl ---- FSL registration matrix -------- 0.998 -0.057 0.004 5.868; 0.004 -0.002 -1.000 177.520; 0.057 0.998 -0.002 -10.385; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Started at Mon May 13 16:46:17 CDT 2013 Ended at Mon May 13 16:46:49 CDT 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1368846400 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.052920 1 -25.0 -25.0 25.0 1.075045 2 -25.0 25.0 -25.0 1.065947 3 -25.0 25.0 25.0 1.051200 4 25.0 -25.0 -25.0 1.055070 5 25.0 -25.0 25.0 1.037468 6 25.0 25.0 -25.0 1.060834 7 25.0 25.0 25.0 1.037068 REL: 8 1.004362 8.435552 1.054444 rel = 0.952504 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9940 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.9525 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9809 0.9809 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9767 0.9767 0.0 8 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.9704 0.9704 0.0 14 -4.0000 -4.0000 -4.0000 0.0000 0.0000 4.0000 0.9684 0.9684 0.0 16 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.9656 0.9656 0.0 25 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.0000 0.9448 0.9448 0.0 36 -4.0000 -4.0000 0.0000 0.0000 -4.0000 -4.0000 0.9370 0.9370 0.0 45 -4.0000 -4.0000 0.0000 4.0000 -4.0000 -4.0000 0.8832 0.8832 0.0 48 -4.0000 -4.0000 0.0000 4.0000 0.0000 -4.0000 0.8771 0.8771 0.0 63 -4.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.7775 0.7775 0.0 289 0.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7464 0.7464 0.0 306 0.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.6717 0.6717 0.0 307 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.0000 0.5694 0.5694 0.0 316 0.0000 -4.0000 4.0000 4.0000 -4.0000 0.0000 0.5252 0.5252 0.0 Brute Force -------------------------- Min cost was 0.525227 Number of iterations 729 Search time 1.014000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 4.000 4.000 -4.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 4 3 4 4 -4 5 0 2 1.000 -4.000 4.000 4.000 -4.000 0.000 0.5106599540 5 1.618 -4.000 4.000 4.000 -4.000 0.000 0.5105962093 7 1.310 -4.000 4.000 4.000 -4.000 0.000 0.5055248328 8 1.311 -4.000 4.000 4.000 -4.000 0.000 0.5055217160 9 1.335 -4.000 4.000 4.000 -4.000 0.000 0.5055208971 11 1.323 -4.000 4.000 4.000 -4.000 0.000 0.5054959814 20 1.323 -4.230 4.000 4.000 -4.000 0.000 0.5043035939 23 1.323 -4.256 4.000 4.000 -4.000 0.000 0.5041775435 24 1.323 -4.302 4.000 4.000 -4.000 0.000 0.5041090080 25 1.323 -4.294 4.000 4.000 -4.000 0.000 0.5040975435 26 1.323 -4.289 4.000 4.000 -4.000 0.000 0.5040963378 27 1.323 -4.290 4.000 4.000 -4.000 0.000 0.5040961064 33 1.323 -4.290 3.382 4.000 -4.000 0.000 0.5027754155 35 1.323 -4.290 3.558 4.000 -4.000 0.000 0.5014410566 36 1.323 -4.290 3.642 4.000 -4.000 0.000 0.5013800266 37 1.323 -4.290 3.614 4.000 -4.000 0.000 0.5011792103 38 1.323 -4.290 3.603 4.000 -4.000 0.000 0.5011125442 39 1.323 -4.290 3.586 4.000 -4.000 0.000 0.5010944026 40 1.323 -4.290 3.591 4.000 -4.000 0.000 0.5010827992 45 1.323 -4.290 3.591 2.382 -4.000 0.000 0.4468564334 51 1.323 -4.290 3.591 2.467 -4.000 0.000 0.4460581859 66 1.323 -4.290 3.591 2.467 -3.901 0.000 0.4433114088 67 1.323 -4.290 3.591 2.467 -3.846 0.000 0.4428472942 69 1.323 -4.290 3.591 2.467 -3.854 0.000 0.4428285515 70 1.323 -4.290 3.591 2.467 -3.856 0.000 0.4428283343 72 1.323 -4.290 3.591 2.467 -3.855 0.000 0.4428281112 74 1.323 -4.290 3.591 2.467 -3.855 1.000 0.4338664518 79 1.323 -4.290 3.591 2.467 -3.855 0.861 0.4314703072 80 1.323 -4.290 3.591 2.467 -3.855 0.829 0.4311998994 82 1.323 -4.290 3.591 2.467 -3.855 0.816 0.4311541398 84 1.323 -4.290 3.591 2.467 -3.855 0.811 0.4311505471 85 1.323 -4.290 3.591 2.467 -3.855 0.810 0.4311505176 96 1.328 -4.290 3.591 2.467 -3.855 0.810 0.4311413456 103 1.328 -4.909 3.591 2.467 -3.855 0.810 0.4255613128 107 1.328 -4.818 3.591 2.467 -3.855 0.810 0.4250163992 110 1.328 -4.801 3.591 2.467 -3.855 0.810 0.4249050064 112 1.328 -4.795 3.591 2.467 -3.855 0.810 0.4248932537 113 1.328 -4.794 3.591 2.467 -3.855 0.810 0.4248931137 121 1.328 -4.794 3.668 2.467 -3.855 0.810 0.4240501760 122 1.328 -4.794 3.719 2.467 -3.855 0.810 0.4239609824 123 1.328 -4.794 3.705 2.467 -3.855 0.810 0.4239167432 125 1.328 -4.794 3.704 2.467 -3.855 0.810 0.4239166761 131 1.328 -4.794 3.704 1.849 -3.855 0.810 0.4214001098 133 1.328 -4.794 3.704 2.115 -3.855 0.810 0.4183284348 136 1.328 -4.794 3.704 2.120 -3.855 0.810 0.4183284069 137 1.328 -4.794 3.704 2.118 -3.855 0.810 0.4183273988 148 1.328 -4.794 3.704 2.118 -3.863 0.810 0.4182968373 149 1.328 -4.794 3.704 2.118 -3.870 0.810 0.4182956917 150 1.328 -4.794 3.704 2.118 -3.867 0.810 0.4182924243 161 1.328 -4.794 3.704 2.118 -3.867 0.848 0.4176188230 162 1.328 -4.794 3.704 2.118 -3.867 0.872 0.4174929360 164 1.328 -4.794 3.704 2.118 -3.867 0.870 0.4174923796 166 1.334 -5.297 3.817 1.768 -3.879 0.930 0.4076763915 174 1.332 -5.161 3.787 1.862 -3.875 0.914 0.4076376271 176 1.333 -5.228 3.802 1.816 -3.877 0.921 0.4068616793 177 1.333 -5.228 3.802 1.815 -3.877 0.922 0.4068615018 178 1.333 -5.229 3.802 1.815 -3.877 0.922 0.4068609495 182 1.333 -5.231 3.802 1.814 -3.877 0.922 0.4068608341 184 1.333 -5.230 3.802 1.814 -3.877 0.922 0.4068606392 191 1.152 -5.230 3.802 1.814 -3.877 0.922 0.4040879591 193 1.166 -5.230 3.802 1.814 -3.877 0.922 0.4040837921 195 1.160 -5.230 3.802 1.814 -3.877 0.922 0.4040776908 204 1.160 -5.230 3.802 1.814 -3.877 0.753 0.4027047936 206 1.160 -5.230 3.802 1.814 -3.877 0.800 0.4021350428 207 1.160 -5.230 3.802 1.814 -3.877 0.846 0.4021235860 208 1.160 -5.230 3.802 1.814 -3.877 0.824 0.4020115709 217 1.160 -5.230 3.736 1.814 -3.877 0.824 0.4016903656 219 1.160 -5.230 3.742 1.814 -3.877 0.824 0.4016702053 220 1.160 -5.230 3.765 1.814 -3.877 0.824 0.4016541939 221 1.160 -5.230 3.757 1.814 -3.877 0.824 0.4016496646 222 1.160 -5.230 3.758 1.814 -3.877 0.824 0.4016493991 230 1.160 -5.230 3.758 1.784 -3.877 0.824 0.4013536998 231 1.160 -5.230 3.758 1.718 -3.877 0.824 0.4013451311 233 1.160 -5.230 3.758 1.751 -3.877 0.824 0.4011763944 235 1.160 -5.230 3.758 1.747 -3.877 0.824 0.4011757592 238 1.160 -5.230 3.758 1.748 -3.877 0.824 0.4011749680 246 1.160 -5.230 3.758 1.748 -3.797 0.824 0.3999262769 248 1.160 -5.230 3.758 1.748 -3.793 0.824 0.3999149204 249 1.160 -5.230 3.758 1.748 -3.789 0.824 0.3999105726 257 1.162 -5.422 3.801 1.615 -3.793 0.847 0.3995070957 258 1.161 -5.341 3.783 1.671 -3.791 0.837 0.3994970308 259 1.162 -5.379 3.791 1.645 -3.792 0.841 0.3994073599 260 1.162 -5.381 3.792 1.644 -3.792 0.842 0.3994051580 261 1.162 -5.396 3.795 1.633 -3.793 0.844 0.3994029631 263 1.162 -5.390 3.794 1.638 -3.793 0.843 0.3994004335 275 1.122 -5.390 3.794 1.638 -3.793 0.843 0.3981968361 276 1.083 -5.390 3.794 1.638 -3.793 0.843 0.3975199589 279 1.082 -5.390 3.794 1.638 -3.793 0.843 0.3975185301 287 1.082 -5.390 3.794 1.638 -3.793 0.722 0.3959918015 290 1.082 -5.390 3.794 1.638 -3.793 0.724 0.3959917683 298 1.082 -5.390 3.708 1.638 -3.793 0.724 0.3951121417 299 1.082 -5.390 3.645 1.638 -3.793 0.724 0.3950914672 305 1.082 -5.390 3.635 1.638 -3.793 0.724 0.3950892525 306 1.082 -5.390 3.638 1.638 -3.793 0.724 0.3950870637 307 1.082 -5.390 3.639 1.638 -3.793 0.724 0.3950870013 317 1.082 -5.390 3.639 1.634 -3.793 0.724 0.3950829083 318 1.082 -5.390 3.639 1.632 -3.793 0.724 0.3950823597 326 1.082 -5.390 3.639 1.632 -3.633 0.724 0.3909688871 330 1.082 -5.390 3.639 1.632 -3.632 0.724 0.3909688275 338 1.084 -5.582 3.682 1.499 -3.636 0.746 0.3907930937 339 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901962422 340 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901929019 341 1.083 -5.514 3.667 1.546 -3.635 0.738 0.3900474551 342 1.083 -5.540 3.673 1.528 -3.636 0.741 0.3900158474 343 1.083 -5.533 3.671 1.533 -3.635 0.741 0.3899890777 344 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899870352 345 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899867231 354 0.897 -5.530 3.670 1.535 -3.635 0.740 0.3893905885 355 0.966 -5.530 3.670 1.535 -3.635 0.740 0.3885125243 356 0.979 -5.530 3.670 1.535 -3.635 0.740 0.3884778139 357 0.984 -5.530 3.670 1.535 -3.635 0.740 0.3884597016 359 0.999 -5.530 3.670 1.535 -3.635 0.740 0.3884312519 361 1.000 -5.530 3.670 1.535 -3.635 0.740 0.3884308719 369 1.000 -5.530 3.670 1.535 -3.635 0.613 0.3859645524 371 1.000 -5.530 3.670 1.535 -3.635 0.645 0.3854689898 373 1.000 -5.530 3.670 1.535 -3.635 0.644 0.3854689500 381 1.000 -5.530 3.669 1.535 -3.635 0.644 0.3854570276 383 1.000 -5.530 3.639 1.535 -3.635 0.644 0.3852312564 385 1.000 -5.530 3.633 1.535 -3.635 0.644 0.3852157104 386 1.000 -5.530 3.630 1.535 -3.635 0.644 0.3852130412 387 1.000 -5.530 3.629 1.535 -3.635 0.644 0.3852128318 397 1.000 -5.530 3.629 1.546 -3.635 0.644 0.3851704032 399 1.000 -5.530 3.629 1.547 -3.635 0.644 0.3851697145 411 1.000 -5.530 3.629 1.547 -3.623 0.644 0.3851066343 421 0.999 -5.514 3.625 1.559 -3.623 0.642 0.3850790925 422 0.999 -5.515 3.626 1.557 -3.623 0.642 0.3850775991 423 0.999 -5.517 3.626 1.556 -3.623 0.643 0.3850767121 424 0.999 -5.518 3.626 1.556 -3.623 0.643 0.3850762962 427 0.999 -5.519 3.626 1.555 -3.623 0.643 0.3850762474 436 0.977 -5.515 3.614 1.561 -3.619 0.616 0.3847268755 437 0.967 -5.514 3.609 1.563 -3.618 0.605 0.3847038554 438 0.969 -5.514 3.610 1.563 -3.618 0.607 0.3847033048 439 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847030254 440 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847029014 452 0.931 -5.514 3.610 1.563 -3.618 0.607 0.3844474694 453 0.936 -5.514 3.610 1.563 -3.618 0.607 0.3844016973 454 0.943 -5.514 3.610 1.563 -3.618 0.607 0.3843628983 456 0.944 -5.514 3.610 1.563 -3.618 0.607 0.3843615000 457 0.945 -5.514 3.610 1.563 -3.618 0.607 0.3843614069 467 0.945 -5.521 3.611 1.558 -3.618 0.607 0.3843290456 470 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843112069 471 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843111615 472 0.945 -5.531 3.614 1.551 -3.618 0.609 0.3843109887 484 0.945 -5.531 3.627 1.551 -3.618 0.609 0.3842697066 486 0.945 -5.531 3.626 1.551 -3.618 0.609 0.3842689984 487 0.945 -5.531 3.625 1.551 -3.618 0.609 0.3842689165 497 0.945 -5.531 3.625 1.556 -3.618 0.609 0.3842677711 498 0.945 -5.531 3.625 1.554 -3.618 0.609 0.3842664342 507 0.945 -5.531 3.625 1.554 -3.586 0.609 0.3839528557 509 0.945 -5.531 3.625 1.554 -3.588 0.609 0.3839440941 510 0.945 -5.531 3.625 1.554 -3.591 0.609 0.3839416583 519 0.936 -5.530 3.620 1.557 -3.589 0.598 0.3839312125 520 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839291804 521 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839290531 535 0.920 -5.530 3.621 1.556 -3.590 0.601 0.3838190626 537 0.924 -5.530 3.621 1.556 -3.590 0.601 0.3838120151 549 0.924 -5.529 3.621 1.557 -3.590 0.601 0.3838119734 561 0.924 -5.529 3.631 1.557 -3.590 0.601 0.3837873452 580 0.924 -5.529 3.631 1.557 -3.572 0.601 0.3836780501 591 0.921 -5.528 3.630 1.557 -3.572 0.598 0.3836757641 592 0.921 -5.528 3.630 1.557 -3.572 0.597 0.3836755656 597 0.903 -5.527 3.638 1.559 -3.554 0.594 0.3835845407 604 0.895 -5.526 3.642 1.560 -3.546 0.592 0.3835794654 605 0.896 -5.526 3.641 1.560 -3.547 0.592 0.3835790712 606 0.897 -5.526 3.641 1.560 -3.548 0.593 0.3835789605 638 0.897 -5.510 3.638 1.571 -3.547 0.591 0.3835787626 639 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835746439 640 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835745538 642 0.897 -5.519 3.640 1.564 -3.548 0.593 0.3835743974 643 0.897 -5.520 3.640 1.564 -3.548 0.593 0.3835743327 651 0.897 -5.520 3.639 1.564 -3.548 0.593 0.3835741199 652 0.897 -5.520 3.638 1.564 -3.548 0.593 0.3835739882 654 0.897 -5.520 3.636 1.564 -3.548 0.593 0.3835739332 664 0.897 -5.520 3.636 1.563 -3.548 0.593 0.3835739007 674 0.897 -5.520 3.636 1.563 -3.547 0.593 0.3835737421 681 0.891 -5.519 3.639 1.564 -3.540 0.591 0.3835719195 682 0.893 -5.519 3.638 1.563 -3.542 0.592 0.3835711657 692 0.894 -5.519 3.638 1.563 -3.543 0.592 0.3835711591 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 1.013153 1 -25.0 -25.0 25.0 1.058806 2 -25.0 25.0 -25.0 1.045570 3 -25.0 25.0 25.0 1.063901 4 25.0 -25.0 -25.0 1.063232 5 25.0 -25.0 25.0 1.062666 6 25.0 25.0 -25.0 1.063291 7 25.0 25.0 25.0 1.068569 REL: 8 0.383571 8.439189 1.054899 rel = 0.36361 Number of iterations 7 Min cost was 0.383571 Number of FunctionCalls 693 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.912000 sec Parameters at optimum (transmm) 0.89362 -5.51934 3.63786 Parameters at optimum (rotdeg) 1.56335 -3.54278 0.59184 Costs at optimum 2281 0.6628 0.2750 31.6000 0.8341 0.3142 22.0390 0.3836 Reg at min cost was 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat, type = 14 Original Reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.002 -0.062 0.012 -1.224; -0.012 -0.027 0.000 5.439; -0.062 0.001 -0.027 -3.268; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 7.081879 Computing change in rh position Surface RMS Diff (mm) 7.652021 10.099015 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.35024/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1369183678 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.017659 1 -25.0 -25.0 25.0 1.065419 2 -25.0 25.0 -25.0 1.016386 3 -25.0 25.0 25.0 1.050450 4 25.0 -25.0 -25.0 1.033962 5 25.0 -25.0 25.0 1.049765 6 25.0 25.0 -25.0 1.043729 7 25.0 25.0 25.0 1.070996 REL: 8 0.399041 8.348366 1.043546 rel = 0.38239 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9932 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.3824 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3932 0.3932 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.3896 0.3896 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.3882 0.3882 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.3864 0.3864 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.3862 0.3862 0.0 97 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.0000 0.3849 0.3849 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.3843 0.3843 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3836 0.3836 0.0 Brute Force -------------------------- Min cost was 0.383571 Number of iterations 729 Search time 1.160000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.143 0.000 0.000 0.000 0.000 0.000 0.3985947477 8 -0.127 0.000 0.000 0.000 0.000 0.000 0.3985907563 9 -0.131 0.000 0.000 0.000 0.000 0.000 0.3985902996 10 -0.132 0.000 0.000 0.000 0.000 0.000 0.3985902464 12 -0.133 0.000 0.000 0.000 0.000 0.000 0.3985901829 21 -0.133 0.031 0.000 0.000 0.000 0.000 0.3985422208 23 -0.133 0.025 0.000 0.000 0.000 0.000 0.3985384925 33 -0.133 0.024 0.382 0.000 0.000 0.000 0.3955914377 34 -0.133 0.024 0.329 0.000 0.000 0.000 0.3953062478 35 -0.133 0.024 0.288 0.000 0.000 0.000 0.3952498224 36 -0.133 0.024 0.293 0.000 0.000 0.000 0.3952468267 37 -0.133 0.024 0.296 0.000 0.000 0.000 0.3952464652 38 -0.133 0.024 0.295 0.000 0.000 0.000 0.3952464194 46 -0.133 0.024 0.295 0.123 0.000 0.000 0.3947974507 47 -0.133 0.024 0.295 0.120 0.000 0.000 0.3947944283 48 -0.133 0.024 0.295 0.111 0.000 0.000 0.3947922155 50 -0.133 0.024 0.295 0.113 0.000 0.000 0.3947918104 59 -0.133 0.024 0.295 0.114 0.108 0.000 0.3943948822 61 -0.133 0.024 0.295 0.114 0.091 0.000 0.3943800512 62 -0.133 0.024 0.295 0.114 0.092 0.000 0.3943798743 68 -0.133 0.024 0.295 0.114 0.092 -0.618 0.3892245715 70 -0.133 0.024 0.295 0.114 0.092 -0.504 0.3888437663 71 -0.133 0.024 0.295 0.114 0.092 -0.476 0.3888042851 83 -0.193 0.024 0.295 0.114 0.092 -0.476 0.3887751147 84 -0.170 0.024 0.295 0.114 0.092 -0.476 0.3887445973 85 -0.168 0.024 0.295 0.114 0.092 -0.476 0.3887434349 86 -0.161 0.024 0.295 0.114 0.092 -0.476 0.3887419289 88 -0.163 0.024 0.295 0.114 0.092 -0.476 0.3887418978 97 -0.163 0.096 0.295 0.114 0.092 -0.476 0.3884674076 99 -0.163 0.088 0.295 0.114 0.092 -0.476 0.3884628102 100 -0.163 0.087 0.295 0.114 0.092 -0.476 0.3884627619 108 -0.163 0.087 0.321 0.114 0.092 -0.476 0.3884140214 110 -0.163 0.087 0.326 0.114 0.092 -0.476 0.3884128733 119 -0.163 0.087 0.326 0.140 0.092 -0.476 0.3883672079 121 -0.163 0.087 0.326 0.143 0.092 -0.476 0.3883671635 123 -0.163 0.087 0.326 0.142 0.092 -0.476 0.3883671225 130 -0.163 0.087 0.326 0.142 0.224 -0.476 0.3878621347 131 -0.163 0.087 0.326 0.142 0.223 -0.476 0.3878612206 132 -0.163 0.087 0.326 0.142 0.211 -0.476 0.3878570950 144 -0.163 0.087 0.326 0.142 0.212 -0.500 0.3878281938 145 -0.163 0.087 0.326 0.142 0.212 -0.503 0.3878266281 147 -0.163 0.087 0.326 0.142 0.212 -0.506 0.3878262535 148 -0.163 0.087 0.326 0.142 0.212 -0.505 0.3878261972 150 -0.193 0.150 0.357 0.170 0.332 -0.534 0.3877013446 157 -0.181 0.125 0.345 0.159 0.285 -0.523 0.3875830306 159 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875815549 160 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875814980 172 -0.276 0.128 0.346 0.160 0.290 -0.524 0.3873284729 175 -0.284 0.128 0.346 0.160 0.290 -0.524 0.3873265784 176 -0.282 0.128 0.346 0.160 0.290 -0.524 0.3873261847 185 -0.282 0.121 0.346 0.160 0.290 -0.524 0.3873226515 196 -0.282 0.121 0.383 0.160 0.290 -0.524 0.3873106524 198 -0.282 0.121 0.367 0.160 0.290 -0.524 0.3872954561 200 -0.282 0.121 0.366 0.160 0.290 -0.524 0.3872954399 210 -0.282 0.121 0.366 0.156 0.290 -0.524 0.3872940597 211 -0.282 0.121 0.366 0.155 0.290 -0.524 0.3872939981 219 -0.282 0.121 0.366 0.155 0.290 -0.592 0.3872110852 220 -0.282 0.121 0.366 0.155 0.290 -0.580 0.3872086302 222 -0.282 0.121 0.366 0.155 0.290 -0.579 0.3872086258 231 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084376 235 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084272 237 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872082552 246 -0.285 0.123 0.367 0.156 0.293 -0.580 0.3872077911 250 -0.298 0.123 0.367 0.156 0.293 -0.580 0.3872053814 252 -0.297 0.123 0.367 0.156 0.293 -0.580 0.3872053607 260 -0.297 0.124 0.367 0.156 0.293 -0.580 0.3872044882 261 -0.297 0.132 0.367 0.156 0.293 -0.580 0.3872009406 264 -0.297 0.131 0.367 0.156 0.293 -0.580 0.3872009379 275 -0.297 0.131 0.365 0.156 0.293 -0.580 0.3872008005 284 -0.297 0.131 0.365 0.168 0.293 -0.580 0.3871989623 286 -0.297 0.131 0.365 0.163 0.293 -0.580 0.3871976771 297 -0.297 0.131 0.365 0.163 0.293 -0.583 0.3871975995 306 -0.296 0.129 0.364 0.162 0.289 -0.581 0.3871926752 307 -0.291 0.118 0.359 0.157 0.268 -0.576 0.3871920010 309 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871863782 311 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871862269 324 -0.301 0.123 0.361 0.160 0.278 -0.579 0.3871855990 325 -0.299 0.123 0.361 0.160 0.278 -0.579 0.3871851294 334 -0.299 0.124 0.361 0.160 0.278 -0.579 0.3871842671 335 -0.299 0.133 0.361 0.160 0.278 -0.579 0.3871818538 337 -0.299 0.131 0.361 0.160 0.278 -0.579 0.3871814371 347 -0.299 0.131 0.358 0.160 0.278 -0.579 0.3871805819 358 -0.299 0.131 0.358 0.164 0.278 -0.579 0.3871793024 359 -0.299 0.131 0.358 0.165 0.278 -0.579 0.3871792906 368 -0.299 0.131 0.358 0.165 0.278 -0.583 0.3871789270 369 -0.299 0.131 0.358 0.165 0.278 -0.582 0.3871789071 370 -0.299 0.131 0.358 0.165 0.278 -0.581 0.3871786252 380 -0.297 0.128 0.357 0.163 0.273 -0.580 0.3871780292 382 -0.297 0.129 0.357 0.164 0.273 -0.580 0.3871779151 397 -0.296 0.129 0.357 0.164 0.273 -0.580 0.3871779108 405 -0.296 0.135 0.357 0.164 0.273 -0.580 0.3871773556 407 -0.296 0.132 0.357 0.164 0.273 -0.580 0.3871768371 428 -0.296 0.132 0.357 0.165 0.273 -0.580 0.3871767962 429 -0.296 0.132 0.357 0.166 0.273 -0.580 0.3871767886 438 -0.296 0.132 0.357 0.166 0.273 -0.584 0.3871764837 449 -0.296 0.132 0.356 0.166 0.272 -0.582 0.3871764773 453 -0.296 0.132 0.357 0.166 0.273 -0.582 0.3871764492 455 -0.295 0.135 0.356 0.168 0.272 -0.585 0.3871762311 462 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761684 468 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761649 469 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761602 503 -0.295 0.135 0.355 0.168 0.272 -0.584 0.3871761349 531 -0.295 0.136 0.355 0.167 0.272 -0.585 0.3871760497 534 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 539 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 575 -0.295 0.136 0.356 0.167 0.272 -0.586 0.3871759713 610 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759616 611 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759518 633 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759358 643 -0.295 0.136 0.355 0.168 0.272 -0.586 0.3871759350 Powell done niters = 8 Computing relative cost 0 -25.0 -25.0 -25.0 1.018295 1 -25.0 -25.0 25.0 1.065241 2 -25.0 25.0 -25.0 1.020058 3 -25.0 25.0 25.0 1.055383 4 25.0 -25.0 -25.0 1.036075 5 25.0 -25.0 25.0 1.050567 6 25.0 25.0 -25.0 1.043855 7 25.0 25.0 25.0 1.069080 REL: 8 0.387176 8.358553 1.044819 rel = 0.370567 Number of iterations 8 Min cost was 0.387176 Number of FunctionCalls 682 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 92.678000 sec Parameters at optimum (transmm) -0.29477 0.13618 0.35526 Parameters at optimum (rotdeg) 0.16728 0.27177 -0.58568 Costs at optimum 227537 0.6571 0.2657 30.3707 0.8299 0.3070 22.3892 0.3872 Reg at min cost was 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.004 -0.010 0.455; 0.010 -0.003 0.000 -0.141; 0.005 -0.000 -0.003 -0.311; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.693981 Computing change in rh position Surface RMS Diff (mm) 0.610632 1.160309 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Mon May 13 16:46:16 CDT 2013 Ended at Mon May 13 16:48:53 CDT 2013 BBR-Run-Time-Sec 157 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Mon May 13 16:48:53 CDT 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Mon May 13 16:52:02 CDT 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 420047 values in range Counting number of voxels Found 420047 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 442102 values in range Counting number of voxels Found 442102 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 18636 values in range Counting number of voxels Found 18636 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838430 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 10 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 4.000000 4 k 753.000000 5 k 1.000000 6 k 6.000000 7 k 1.000000 8 k 1.000000 9 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 6.000000 2 k 2.000000 3 k 1.000000 4 k 722.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 444728 values in range Counting number of voxels Found 444728 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 696836 values in range Counting number of voxels Found 696836 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 16976 values in range Counting number of voxels Found 16976 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask-vent.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_snr.txt flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour #------------------------------------- #@# Tensor fit Mon May 13 17:00:21 CDT 2013 dtifit -k /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz -m /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs -b /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals -o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit 0 64 0 64 0 30 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Mon May 13 17:01:08 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.32898.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.32898.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.32898.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 898 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 5062 total streamlines (min/mean/max length: 62/100/132) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2859 non-truncated streamlines (min/mean/max length: 65/100/132) INFO: Center of mass of start points: (97+/-4, 98+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 76+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34329 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 98 32 100 105 47 113 110 86 113 105 121 114 105 141 INFO: Distances between consecutive points are 17 41 35 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 309.584 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 929 streamlines for straying off mask INFO: Rejected 889 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4245 total streamlines (min/mean/max length: 50/97/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2597 non-truncated streamlines (min/mean/max length: 52/97/137) INFO: Center of mass of start points: (78+/-8, 100+/-9, 68+/-45) INFO: Center of mass of midpoints: (81+/-3, 99+/-6, 46+/-14) INFO: Center of mass of end points: (71+/-10, 102+/-9, 115+/-44) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 36155 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 98 36 73 108 61 63 111 88 68 103 139 67 103 146 INFO: Distances between consecutive points are 29 29 52 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 225.183 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 246 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2078 total streamlines (min/mean/max length: 44/87/121) Processing pathway 3 of 18... Matching streamline ends INFO: Have 794 non-truncated streamlines (min/mean/max length: 51/96/121) INFO: Center of mass of start points: (124+/-15, 100+/-44, 50+/-15) INFO: Center of mass of midpoints: (133+/-5, 129+/-3, 43+/-6) INFO: Center of mass of end points: (120+/-15, 75+/-43, 62+/-18) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23586 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 133 40 133 110 55 131 86 63 118 64 71 107 49 56 INFO: Distances between consecutive points are 28 25 27 24 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 137 133 40 134 110 54 131 86 63 118 64 71 107 48 56 INFO: Distances between consecutive points are 27 26 27 25 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 138 133 40 130 85 63 121 67 70 109 49 67 107 48 56 INFO: Distances between consecutive points are 54 21 22 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 91.894 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 131 streamlines for straying off mask INFO: Rejected 25 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1111 total streamlines (min/mean/max length: 52/92/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 486 non-truncated streamlines (min/mean/max length: 58/103/123) INFO: Center of mass of start points: (53+/-11, 124+/-36, 43+/-13) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 41+/-5) INFO: Center of mass of end points: (65+/-13, 59+/-36, 68+/-18) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 19323 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 110 57 50 86 65 64 59 75 70 40 59 INFO: Distances between consecutive points are 32 25 32 26 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 112 56 49 87 66 61 62 75 71 40 64 INFO: Distances between consecutive points are 29 27 29 27 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 124 49 45 99 59 54 74 71 73 45 75 INFO: Distances between consecutive points are 24 27 29 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 39 49 115 53 49 90 61 61 67 75 77 40 78 INFO: Distances between consecutive points are 26 26 29 32 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 46 147 42 48 125 48 45 100 58 53 76 69 66 50 73 INFO: Distances between consecutive points are 23 27 28 29 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 136 40 48 124 46 50 87 64 67 55 77 77 40 78 INFO: Distances between consecutive points are 15 41 38 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 151.449 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 4212 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 58 total streamlines (min/mean/max length: 1/14/32) Processing pathway 5 of 18... Matching streamline ends INFO: Have 29 non-truncated streamlines (min/mean/max length: 10/13/21) INFO: Center of mass of start points: (125+/-1, 132+/-4, 47+/-6) INFO: Center of mass of midpoints: (126+/-2, 131+/-2, 47+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 51+/-5) INFO: Split streamlines into 3 segments Computing path histograms INFO: Total streamline volume is 442 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 130 50 126 128 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 125 126 51 123 126 48 122 128 45 120 130 43 INFO: Distances between consecutive points are 3 4 4 3 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 127 50 131 132 49 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 125 132 45 125 130 48 126 129 51 126 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 128 54 126 129 51 126 130 49 126 131 47 125 135 43 INFO: Distances between consecutive points are 3 2 2 6 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 129 50 126 128 54 INFO: Distances between consecutive points are 2 2 4 4 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 45 126 132 47 126 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 126 132 45 126 130 48 127 129 51 127 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 44 125 133 45 125 132 47 125 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 45 124 133 45 126 131 47 127 129 49 127 128 54 INFO: Distances between consecutive points are 2 3 3 5 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 46 125 131 48 126 130 50 126 129 54 INFO: Distances between consecutive points are 3 3 2 4 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 130 52 126 130 50 125 131 48 125 134 44 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 45 124 132 46 125 130 47 126 129 49 127 129 54 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 129 52 126 130 50 126 131 48 125 135 44 INFO: Distances between consecutive points are 2 2 2 6 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 125 132 45 125 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 44 124 131 45 126 129 48 126 128 51 127 128 54 INFO: Distances between consecutive points are 3 4 3 3 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 132 45 125 131 47 125 130 49 125 129 54 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 131 46 124 130 48 125 129 51 125 128 54 INFO: Distances between consecutive points are 4 2 3 3 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 124 132 45 124 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 129 54 127 129 52 127 130 50 127 131 48 125 136 44 INFO: Distances between consecutive points are 2 2 2 7 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 135 43 126 132 45 127 130 48 128 128 52 127 127 55 INFO: Distances between consecutive points are 4 4 5 3 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 43 124 130 46 125 128 49 125 127 51 126 126 56 INFO: Distances between consecutive points are 4 4 2 5 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 122 133 42 124 130 45 125 128 48 125 127 51 126 126 55 INFO: Distances between consecutive points are 5 4 3 4 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 55 126 128 53 126 128 51 126 129 49 127 133 48 INFO: Distances between consecutive points are 2 2 2 4 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 136 46 126 134 48 127 132 49 127 130 51 127 129 54 INFO: Distances between consecutive points are 3 2 3 3 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 15 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 127 126 53 127 127 50 128 130 47 130 135 47 INFO: Distances between consecutive points are 3 3 4 5 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 126 126 52 126 127 47 126 129 43 124 133 40 INFO: Distances between consecutive points are 4 5 4 5 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 125 57 127 124 53 128 125 49 129 129 44 130 133 42 INFO: Distances between consecutive points are 4 4 6 5 WARN: Could not find satisfactory control point fit - try 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 56.382 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 669 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 4 streamlines as length outliers INFO: Have 4972 total streamlines (min/mean/max length: 9/64/102) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3858 non-truncated streamlines (min/mean/max length: 9/65/102) INFO: Center of mass of start points: (59+/-11, 151+/-14, 47+/-8) INFO: Center of mass of midpoints: (53+/-4, 133+/-2, 44+/-3) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 20129 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 133 44 57 129 59 75 159 62 77 172 59 INFO: Distances between consecutive points are 13 16 35 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 132.463 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 3142 streamlines for straying off mask INFO: Rejected 182 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 4120 total streamlines (min/mean/max length: 80/129/158) Processing pathway 7 of 18... Matching streamline ends INFO: Have 3167 non-truncated streamlines (min/mean/max length: 80/131/158) INFO: Center of mass of start points: (89+/-15, 40+/-11, 100+/-16) INFO: Center of mass of midpoints: (106+/-5, 45+/-10, 94+/-13) INFO: Center of mass of end points: (87+/-16, 40+/-10, 101+/-16) INFO: Split streamlines into 33 segments Computing path histograms INFO: Total streamline volume is 49457 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 54 86 95 89 84 63 67 87 72 39 109 INFO: Distances between consecutive points are 34 41 39 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 60 66 92 89 91 83 116 64 89 98 37 104 INFO: Distances between consecutive points are 32 39 39 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 65 91 88 91 83 116 65 90 98 36 103 INFO: Distances between consecutive points are 33 40 39 37 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 37 104 116 61 88 91 90 82 60 67 92 77 41 103 INFO: Distances between consecutive points are 34 39 40 33 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 63 86 90 90 83 62 65 88 77 39 110 INFO: Distances between consecutive points are 36 39 38 37 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 59 65 92 91 91 83 117 61 88 98 34 103 INFO: Distances between consecutive points are 33 42 40 36 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 59 66 92 90 91 83 117 62 89 98 36 103 INFO: Distances between consecutive points are 34 41 40 35 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 66 88 91 89 84 116 60 89 98 45 116 INFO: Distances between consecutive points are 36 36 39 36 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 89 89 84 116 62 88 97 45 116 INFO: Distances between consecutive points are 36 35 38 38 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 59 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 61 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 157 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 36 109 120 60 86 91 93 84 58 66 89 79 39 104 INFO: Distances between consecutive points are 37 44 43 37 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 72 38 109 INFO: Distances between consecutive points are 32 36 38 33 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 37 101 116 62 89 92 89 85 63 71 87 72 41 104 INFO: Distances between consecutive points are 30 36 34 36 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 91 89 83 115 61 89 98 45 116 INFO: Distances between consecutive points are 36 36 37 36 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 90 89 83 114 62 88 98 45 114 INFO: Distances between consecutive points are 36 36 36 35 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 63 71 86 93 86 82 118 60 87 98 38 111 INFO: Distances between consecutive points are 37 34 36 38 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 64 86 90 93 84 58 69 88 78 39 101 INFO: Distances between consecutive points are 39 42 40 38 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 72 37 103 INFO: Distances between consecutive points are 31 35 34 37 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 64 78 86 99 89 83 120 58 86 102 38 109 INFO: Distances between consecutive points are 36 37 38 35 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 64 84 99 37 105 INFO: Distances between consecutive points are 38 36 36 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 108 113 63 89 89 90 86 62 66 92 73 42 97 INFO: Distances between consecutive points are 33 36 37 27 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 36 104 116 62 84 92 88 81 63 67 84 75 36 103 INFO: Distances between consecutive points are 37 36 36 38 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 63 85 99 41 105 INFO: Distances between consecutive points are 32 33 33 34 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 75 44 93 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 73 44 106 INFO: Distances between consecutive points are 31 35 34 33 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 35 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 97 90 83 63 77 87 74 44 92 INFO: Distances between consecutive points are 37 39 37 35 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 98 89 83 120 60 86 95 40 104 INFO: Distances between consecutive points are 36 36 37 37 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 35 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 114 62 85 95 90 84 66 72 87 81 44 87 INFO: Distances between consecutive points are 35 34 34 32 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 35 31 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 62 84 99 37 105 INFO: Distances between consecutive points are 38 35 37 37 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 65 84 99 37 104 INFO: Distances between consecutive points are 38 35 35 38 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 117 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 91 86 82 63 69 86 74 39 101 INFO: Distances between consecutive points are 31 35 33 35 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 62 75 87 94 91 83 120 65 86 100 40 102 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 38 103 INFO: Distances between consecutive points are 41 39 41 43 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 69 87 90 90 84 116 68 85 102 41 106 INFO: Distances between consecutive points are 30 33 34 37 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 63 84 99 36 103 INFO: Distances between consecutive points are 38 36 37 37 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 64 84 83 90 82 118 71 88 93 38 103 INFO: Distances between consecutive points are 40 38 40 44 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 41 95 62 75 86 95 91 82 119 62 85 94 40 104 INFO: Distances between consecutive points are 39 37 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 40 104 56 66 85 85 90 83 119 69 89 94 42 105 INFO: Distances between consecutive points are 40 38 40 40 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 67 85 85 90 82 119 68 89 93 39 104 INFO: Distances between consecutive points are 41 37 41 42 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 63 67 84 86 92 84 114 72 89 100 37 87 INFO: Distances between consecutive points are 35 34 35 38 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 55 66 84 84 91 83 119 70 89 94 39 104 INFO: Distances between consecutive points are 42 38 41 43 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 60 86 98 89 82 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 36 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 60 84 102 34 102 INFO: Distances between consecutive points are 39 36 38 35 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 57 88 90 86 85 60 64 90 73 36 104 INFO: Distances between consecutive points are 30 37 38 34 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 103 63 67 84 93 88 81 117 61 84 98 35 103 INFO: Distances between consecutive points are 38 37 36 37 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 36 102 61 64 89 86 87 85 112 62 89 99 35 100 INFO: Distances between consecutive points are 33 34 36 32 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 99 89 82 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 61 63 89 85 87 85 111 63 88 99 35 100 INFO: Distances between consecutive points are 33 34 36 33 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 105 115 63 90 87 89 82 60 63 84 79 32 88 INFO: Distances between consecutive points are 30 39 38 37 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 66 88 88 91 83 55 69 85 80 39 98 INFO: Distances between consecutive points are 42 41 40 41 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 97 90 82 120 63 85 98 34 99 INFO: Distances between consecutive points are 36 35 36 39 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 67 88 88 91 83 55 69 85 80 39 97 INFO: Distances between consecutive points are 42 40 40 41 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 104 119 65 88 89 90 82 56 71 85 80 39 97 INFO: Distances between consecutive points are 41 40 38 42 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 90 87 84 61 64 89 73 35 102 INFO: Distances between consecutive points are 32 35 37 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 93 88 81 117 61 83 98 34 102 INFO: Distances between consecutive points are 38 37 36 38 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 56 88 92 85 85 61 66 90 75 37 107 INFO: Distances between consecutive points are 29 35 37 36 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 103 64 68 82 91 90 81 117 63 84 98 35 103 INFO: Distances between consecutive points are 39 35 38 39 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 116 59 84 97 86 81 66 74 85 79 43 101 INFO: Distances between consecutive points are 36 33 33 37 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 115 60 92 92 86 85 61 71 92 73 37 96 INFO: Distances between consecutive points are 32 35 35 36 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 38 98 55 67 84 84 91 83 118 71 89 94 42 106 INFO: Distances between consecutive points are 41 38 40 41 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 91 87 84 62 67 89 74 36 102 INFO: Distances between consecutive points are 32 35 36 36 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 62 83 98 34 102 INFO: Distances between consecutive points are 39 36 36 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 104 115 60 92 93 86 85 61 73 92 72 38 100 INFO: Distances between consecutive points are 32 35 35 38 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 58 88 92 86 84 61 66 89 74 36 103 INFO: Distances between consecutive points are 30 34 37 36 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 116 63 93 90 87 86 59 69 93 72 39 109 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 33 100 117 61 84 95 90 81 64 70 81 75 36 104 INFO: Distances between consecutive points are 36 37 37 42 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 119 63 88 94 90 83 60 79 86 72 42 93 INFO: Distances between consecutive points are 39 37 36 40 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 44 101 64 72 83 97 88 81 116 59 84 98 34 103 INFO: Distances between consecutive points are 37 37 35 36 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 36 92 119 70 88 80 90 82 57 62 84 80 39 97 INFO: Distances between consecutive points are 42 44 36 35 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 2562.02 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 1207 streamlines for straying off mask INFO: Rejected 351 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 13034 total streamlines (min/mean/max length: 51/83/109) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10164 non-truncated streamlines (min/mean/max length: 53/85/112) INFO: Center of mass of start points: (91+/-13, 186+/-6, 76+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 44863 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 85 191 81 72 166 72 93 154 76 109 169 71 101 182 78 INFO: Distances between consecutive points are 30 25 22 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 733.89 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 84 streamlines for straying off mask INFO: Rejected 13 streamlines for reversing direction INFO: Rejected 32 streamlines as length outliers INFO: Have 8985 total streamlines (min/mean/max length: 30/58/86) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3541 non-truncated streamlines (min/mean/max length: 37/67/85) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-14, 150+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 32785 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 119 80 101 127 78 108 140 78 111 173 70 107 181 67 INFO: Distances between consecutive points are 9 15 34 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 301.389 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 164 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 7551 total streamlines (min/mean/max length: 31/60/87) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3430 non-truncated streamlines (min/mean/max length: 42/68/87) INFO: Center of mass of start points: (71+/-11, 166+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 29975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 75 194 84 77 190 83 67 165 76 68 148 80 83 116 76 INFO: Distances between consecutive points are 5 28 17 36 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 251.566 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 1937 streamlines for straying off mask INFO: Rejected 17 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1132 total streamlines (min/mean/max length: 1/33/72) Processing pathway 11 of 18... Matching streamline ends INFO: Have 475 non-truncated streamlines (min/mean/max length: 14/38/70) INFO: Center of mass of start points: (116+/-5, 106+/-12, 50+/-10) INFO: Center of mass of midpoints: (109+/-4, 85+/-2, 70+/-3) INFO: Center of mass of end points: (111+/-6, 81+/-12, 74+/-12) INFO: Split streamlines into 7 segments Computing path histograms INFO: Total streamline volume is 6794 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 31 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 118 108 45 117 105 48 110 95 61 109 87 68 109 82 73 INFO: Distances between consecutive points are 4 18 11 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 24.036 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 326 streamlines for straying off mask INFO: Rejected 101 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2619 total streamlines (min/mean/max length: 11/40/99) Processing pathway 12 of 18... Matching streamline ends INFO: Have 855 non-truncated streamlines (min/mean/max length: 13/46/99) INFO: Center of mass of start points: (63+/-4, 114+/-14, 47+/-10) INFO: Center of mass of midpoints: (70+/-4, 87+/-2, 70+/-3) INFO: Center of mass of end points: (69+/-5, 82+/-12, 78+/-12) INFO: Split streamlines into 9 segments Computing path histograms INFO: Total streamline volume is 12804 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 57 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 62 123 41 67 115 42 67 111 43 70 83 74 66 72 80 INFO: Distances between consecutive points are 9 4 42 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 23.92 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4065 total streamlines (min/mean/max length: 27/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2431 non-truncated streamlines (min/mean/max length: 27/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-4, 105+/-2) INFO: Center of mass of end points: (99+/-4, 97+/-30, 102+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 157 87 97 141 95 97 125 102 98 100 104 101 83 103 INFO: Distances between consecutive points are 18 17 25 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 80.604 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from 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/usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 118 streamlines for straying off mask INFO: Rejected 1 streamlines for reversing direction INFO: Rejected 25 streamlines as length outliers INFO: Have 3528 total streamlines (min/mean/max length: 29/62/125) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2234 non-truncated streamlines (min/mean/max length: 30/65/125) INFO: Center of mass of start points: (81+/-4, 119+/-33, 99+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16105 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 145 96 83 136 102 82 112 104 76 82 104 77 74 106 INFO: Distances between consecutive points are 11 24 31 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 52.834 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 564 streamlines for straying off mask INFO: Rejected 250 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5750 total streamlines (min/mean/max length: 23/58/100) Processing pathway 15 of 18... Matching streamline ends INFO: Have 2878 non-truncated streamlines (min/mean/max length: 30/65/100) INFO: Center of mass of start points: (143+/-8, 113+/-21, 99+/-13) INFO: Center of mass of midpoints: (131+/-6, 118+/-3, 99+/-5) INFO: Center of mass of end points: (144+/-8, 98+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 37225 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 129 104 128 115 100 129 89 102 137 86 106 144 88 113 INFO: Distances between consecutive points are 23 26 9 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 145.498 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 637 streamlines for straying off mask INFO: Rejected 476 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 8195 total streamlines (min/mean/max length: 20/62/124) Processing pathway 16 of 18... Matching streamline ends INFO: Have 3949 non-truncated streamlines (min/mean/max length: 27/68/125) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-2, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 48752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 135 103 35 131 100 52 119 100 53 81 101 41 74 115 INFO: Distances between consecutive points are 6 21 38 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 308.197 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 625 streamlines for straying off mask INFO: Rejected 34 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3430 total streamlines (min/mean/max length: 34/86/148) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2415 non-truncated streamlines (min/mean/max length: 37/89/148) INFO: Center of mass of start points: (144+/-7, 105+/-26, 77+/-17) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (144+/-7, 108+/-26, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 30284 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 92 61 137 85 65 122 79 94 126 104 103 138 122 96 INFO: Distances between consecutive points are 14 33 27 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 81.947 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 165 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1652 total streamlines (min/mean/max length: 30/85/128) Processing pathway 18 of 18... Matching streamline ends INFO: Have 992 non-truncated streamlines (min/mean/max length: 57/89/128) INFO: Center of mass of start points: (36+/-8, 114+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-8, 101+/-28, 81+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 21265 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 31 132 105 53 118 104 54 96 105 53 79 90 36 79 67 INFO: Distances between consecutive points are 26 22 23 29 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 30 130 106 53 117 104 54 92 104 53 78 89 36 79 67 INFO: Distances between consecutive points are 26 25 21 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 40.919 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.32898.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.32898.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr Training subject directory list: /private/tmp/subj23.freesurfer.32898.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 928 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 5020 total streamlines (min/mean/max length: 63/100/130) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2639 non-truncated streamlines (min/mean/max length: 66/100/133) INFO: Center of mass of start points: (97+/-4, 99+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 77+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 33771 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 96 98 30 100 105 46 112 112 76 112 106 120 112 111 145 INFO: Distances between consecutive points are 18 33 44 25 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 203.421 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1040 streamlines for straying off mask INFO: Rejected 726 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4297 total streamlines (min/mean/max length: 51/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2557 non-truncated streamlines (min/mean/max length: 53/97/136) INFO: Center of mass of start points: (78+/-8, 100+/-9, 67+/-45) INFO: Center of mass of midpoints: (81+/-3, 100+/-6, 45+/-13) INFO: Center of mass of end points: (71+/-10, 102+/-9, 114+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 35942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 102 37 78 102 41 76 106 58 65 111 82 69 103 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 143.969 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 299 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 2031 total streamlines (min/mean/max length: 43/87/118) Processing pathway 3 of 18... Matching streamline ends INFO: Have 759 non-truncated streamlines (min/mean/max length: 49/95/118) INFO: Center of mass of start points: (125+/-14, 103+/-43, 48+/-14) INFO: Center of mass of midpoints: (133+/-5, 130+/-2, 43+/-5) INFO: Center of mass of end points: (120+/-14, 73+/-42, 61+/-17) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23094 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 134 129 43 133 101 62 132 85 67 120 64 73 113 43 67 INFO: Distances between consecutive points are 34 17 25 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 36.679 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 163 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1084 total streamlines (min/mean/max length: 52/93/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 446 non-truncated streamlines (min/mean/max length: 58/101/126) INFO: Center of mass of start points: (53+/-11, 123+/-36, 43+/-14) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 40+/-5) INFO: Center of mass of end points: (64+/-13, 61+/-37, 69+/-19) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 19350 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 126 50 44 98 60 56 70 73 75 41 76 INFO: Distances between consecutive points are 22 30 33 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 51 149 44 52 140 43 46 111 52 59 56 73 66 44 82 INFO: Distances between consecutive points are 9 31 60 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 38.879 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 4221 streamlines for straying off mask INFO: Rejected 2 streamlines for reversing direction INFO: Rejected 9 streamlines as length outliers INFO: Have 56 total streamlines (min/mean/max length: 1/13/33) Processing pathway 5 of 18... Matching streamline ends INFO: Have 27 non-truncated streamlines (min/mean/max length: 1/11/20) INFO: Center of mass of start points: (126+/-2, 132+/-3, 47+/-5) INFO: Center of mass of midpoints: (126+/-2, 131+/-1, 46+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 50+/-5) INFO: Split streamlines into 1 segments Computing path histograms INFO: Total streamline volume is 409 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 42 124 130 45 125 128 49 125 127 52 126 127 55 INFO: Distances between consecutive points are 4 5 3 3 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 130 135 45 130 132 46 129 129 46 128 127 49 128 126 55 INFO: Distances between consecutive points are 3 3 4 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 128 50 131 133 48 INFO: Distances between consecutive points are 3 2 3 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 127 125 53 128 125 49 129 127 46 130 134 42 INFO: Distances between consecutive points are 3 4 4 8 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 20 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 132 38 127 129 42 127 127 46 128 125 50 126 125 57 INFO: Distances between consecutive points are 5 4 5 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 126 126 52 125 126 50 123 127 48 121 130 43 INFO: Distances between consecutive points are 2 2 3 6 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 2 voxels Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Mon May 13 18:52:00 CDT 2013 New invocation of trac-all Tue May 14 09:57:52 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer5.1/bin/trac-all -prep -c ./dmrirc_single_subject Subject freesurfer SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data FREESURFER_HOME /usr/local/freesurfer5.1 Actual FREESURFER_HOME /usr/local/freesurfer5.1 build-stamp.txt: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 795M wired, 4813M active, 468M inactive, 6077M used, 6193M free. ######################################## Program versions: $Id: trac-all,v 1.35 2011/09/02 19:19:22 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/05/14-14:57:53-GMT BuildTimeStamp: Aug 13 2010 11:45:39 CVS: $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40000 FLIRT version 5.5 $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ $Id: mri_cvs_register,v 1.4.2.2 2010/08/11 17:52:00 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/14-14:57:53-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/14-14:57:53-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/14-14:57:53-GMT BuildTimeStamp: Apr 14 2011 15:35:19 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/05/14-14:57:53-GMT BuildTimeStamp: Aug 23 2011 14:45:24 CVS: User: brainlab Machine: cerebrum.uwm.edu Platform: Darwin PlatformVersion: 10.8.0 CompilerName: GCC CompilerVersion: 40200 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer5.1 Previous: /usr/local/freesurfer New invocation of trac-preproc brainlab cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited descriptors 256 memorylocked unlimited maxproc 266 PhysMem: 795M wired, 4819M active, 469M inactive, 6084M used, 6189M free. #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Tue May 14 09:57:56 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/dti/orig/N1006_dti.nii... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, -1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz... cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvecs.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs cp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/DTI/dti_14_bvals.txt /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is RPS INFO: input image determinant is -64 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.nii.gz -x -y z /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.mghdti.bvals /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvals eddy_correct /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_orig_flip.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz 0 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0000 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0001 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0002 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0003 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0004 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0005 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0006 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0007 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0008 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0009 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0010 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0011 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0012 processing /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi_tmp0013 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot xfmrot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.ecclog /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs.norot /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/bvecs fslroi /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz 0 2 fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz -Tmean /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz bet /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_mask.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff #------------------------------------- #@# Intra-subject registration Tue May 14 10:00:34 CDT 2013 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brain.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz... flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz x z -y /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz fslorient -forceradiological /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz --targ /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl target volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain.nii.gz -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/lowb_brain_anat.flt.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.flt.mat Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.log Tue May 14 10:01:17 CDT 2013 setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data /usr/local/freesurfer/bin/bbregister --s freesurfer --init-fsl --dti --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --fslmat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.35.2.1 2010/08/04 15:50:56 nicks Exp $ Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 FREESURFER_HOME /usr/local/freesurfer5.1 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii... fslregister --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister --dof 6 Log file is /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat.fslregister.log Tue May 14 10:01:17 CDT 2013 --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister --dof 6 $Id: fslregister,v 1.29.2.1 2010/08/04 15:50:56 nicks Exp $ cerebrum.uwm.edu Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 nIters 1 -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/refvol.fslregister.nii mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/refvol.fslregister.nii... -------------------------------------- /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii --frame 0 mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) keeping frame 0 writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii... /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/reg0.54095.dat --regheader --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat.fsl.mat0 --s freesurfer --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/reg0.54095.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.000 4.000; 0.000 0.000 1.000 -10.000; 0.000 -1.000 0.000 4.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -64, ref det = -1 Tue May 14 10:01:23 CDT 2013 /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data flirt.fsl -ref /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/refvol.fslregister.nii -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/fslregister/movvol.fslregister.nii -bins 256 -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat.fsl.mat -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -schedule /usr/local/freesurfer5.1/bin/flirt.newdefault.20080811.sch -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat.fsl.mat0 tkregister2_cmdl --s freesurfer --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --fslreg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl ---- FSL registration matrix -------- 0.998 -0.057 0.004 5.868; 0.004 -0.002 -1.000 177.520; 0.057 0.998 -0.002 -10.385; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -64, ref det = -1 ---- Input registration matrix (computed) -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Started at Tue May 14 10:01:17 CDT 2013 Ended at Tue May 14 10:01:48 CDT 2013 fslregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --surf orig mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.init.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1369191482 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.052920 1 -25.0 -25.0 25.0 1.075045 2 -25.0 25.0 -25.0 1.065947 3 -25.0 25.0 25.0 1.051200 4 25.0 -25.0 -25.0 1.055070 5 25.0 -25.0 25.0 1.037468 6 25.0 25.0 -25.0 1.060834 7 25.0 25.0 25.0 1.037068 REL: 8 1.004362 8.435552 1.054444 rel = 0.952504 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9940 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.9525 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9809 0.9809 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9767 0.9767 0.0 8 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.9704 0.9704 0.0 14 -4.0000 -4.0000 -4.0000 0.0000 0.0000 4.0000 0.9684 0.9684 0.0 16 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.0000 0.9656 0.9656 0.0 25 -4.0000 -4.0000 -4.0000 4.0000 4.0000 0.0000 0.9448 0.9448 0.0 36 -4.0000 -4.0000 0.0000 0.0000 -4.0000 -4.0000 0.9370 0.9370 0.0 45 -4.0000 -4.0000 0.0000 4.0000 -4.0000 -4.0000 0.8832 0.8832 0.0 48 -4.0000 -4.0000 0.0000 4.0000 0.0000 -4.0000 0.8771 0.8771 0.0 63 -4.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.7775 0.7775 0.0 289 0.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7464 0.7464 0.0 306 0.0000 -4.0000 4.0000 0.0000 -4.0000 -4.0000 0.6717 0.6717 0.0 307 0.0000 -4.0000 4.0000 0.0000 -4.0000 0.0000 0.5694 0.5694 0.0 316 0.0000 -4.0000 4.0000 4.0000 -4.0000 0.0000 0.5252 0.5252 0.0 Brute Force -------------------------- Min cost was 0.525227 Number of iterations 729 Search time 0.967000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 4.000 4.000 -4.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 4 3 4 4 -4 5 0 2 1.000 -4.000 4.000 4.000 -4.000 0.000 0.5106599540 5 1.618 -4.000 4.000 4.000 -4.000 0.000 0.5105962093 7 1.310 -4.000 4.000 4.000 -4.000 0.000 0.5055248328 8 1.311 -4.000 4.000 4.000 -4.000 0.000 0.5055217160 9 1.335 -4.000 4.000 4.000 -4.000 0.000 0.5055208971 11 1.323 -4.000 4.000 4.000 -4.000 0.000 0.5054959814 20 1.323 -4.230 4.000 4.000 -4.000 0.000 0.5043035939 23 1.323 -4.256 4.000 4.000 -4.000 0.000 0.5041775435 24 1.323 -4.302 4.000 4.000 -4.000 0.000 0.5041090080 25 1.323 -4.294 4.000 4.000 -4.000 0.000 0.5040975435 26 1.323 -4.289 4.000 4.000 -4.000 0.000 0.5040963378 27 1.323 -4.290 4.000 4.000 -4.000 0.000 0.5040961064 33 1.323 -4.290 3.382 4.000 -4.000 0.000 0.5027754155 35 1.323 -4.290 3.558 4.000 -4.000 0.000 0.5014410566 36 1.323 -4.290 3.642 4.000 -4.000 0.000 0.5013800266 37 1.323 -4.290 3.614 4.000 -4.000 0.000 0.5011792103 38 1.323 -4.290 3.603 4.000 -4.000 0.000 0.5011125442 39 1.323 -4.290 3.586 4.000 -4.000 0.000 0.5010944026 40 1.323 -4.290 3.591 4.000 -4.000 0.000 0.5010827992 45 1.323 -4.290 3.591 2.382 -4.000 0.000 0.4468564334 51 1.323 -4.290 3.591 2.467 -4.000 0.000 0.4460581859 66 1.323 -4.290 3.591 2.467 -3.901 0.000 0.4433114088 67 1.323 -4.290 3.591 2.467 -3.846 0.000 0.4428472942 69 1.323 -4.290 3.591 2.467 -3.854 0.000 0.4428285515 70 1.323 -4.290 3.591 2.467 -3.856 0.000 0.4428283343 72 1.323 -4.290 3.591 2.467 -3.855 0.000 0.4428281112 74 1.323 -4.290 3.591 2.467 -3.855 1.000 0.4338664518 79 1.323 -4.290 3.591 2.467 -3.855 0.861 0.4314703072 80 1.323 -4.290 3.591 2.467 -3.855 0.829 0.4311998994 82 1.323 -4.290 3.591 2.467 -3.855 0.816 0.4311541398 84 1.323 -4.290 3.591 2.467 -3.855 0.811 0.4311505471 85 1.323 -4.290 3.591 2.467 -3.855 0.810 0.4311505176 96 1.328 -4.290 3.591 2.467 -3.855 0.810 0.4311413456 103 1.328 -4.909 3.591 2.467 -3.855 0.810 0.4255613128 107 1.328 -4.818 3.591 2.467 -3.855 0.810 0.4250163992 110 1.328 -4.801 3.591 2.467 -3.855 0.810 0.4249050064 112 1.328 -4.795 3.591 2.467 -3.855 0.810 0.4248932537 113 1.328 -4.794 3.591 2.467 -3.855 0.810 0.4248931137 121 1.328 -4.794 3.668 2.467 -3.855 0.810 0.4240501760 122 1.328 -4.794 3.719 2.467 -3.855 0.810 0.4239609824 123 1.328 -4.794 3.705 2.467 -3.855 0.810 0.4239167432 125 1.328 -4.794 3.704 2.467 -3.855 0.810 0.4239166761 131 1.328 -4.794 3.704 1.849 -3.855 0.810 0.4214001098 133 1.328 -4.794 3.704 2.115 -3.855 0.810 0.4183284348 136 1.328 -4.794 3.704 2.120 -3.855 0.810 0.4183284069 137 1.328 -4.794 3.704 2.118 -3.855 0.810 0.4183273988 148 1.328 -4.794 3.704 2.118 -3.863 0.810 0.4182968373 149 1.328 -4.794 3.704 2.118 -3.870 0.810 0.4182956917 150 1.328 -4.794 3.704 2.118 -3.867 0.810 0.4182924243 161 1.328 -4.794 3.704 2.118 -3.867 0.848 0.4176188230 162 1.328 -4.794 3.704 2.118 -3.867 0.872 0.4174929360 164 1.328 -4.794 3.704 2.118 -3.867 0.870 0.4174923796 166 1.334 -5.297 3.817 1.768 -3.879 0.930 0.4076763915 174 1.332 -5.161 3.787 1.862 -3.875 0.914 0.4076376271 176 1.333 -5.228 3.802 1.816 -3.877 0.921 0.4068616793 177 1.333 -5.228 3.802 1.815 -3.877 0.922 0.4068615018 178 1.333 -5.229 3.802 1.815 -3.877 0.922 0.4068609495 182 1.333 -5.231 3.802 1.814 -3.877 0.922 0.4068608341 184 1.333 -5.230 3.802 1.814 -3.877 0.922 0.4068606392 191 1.152 -5.230 3.802 1.814 -3.877 0.922 0.4040879591 193 1.166 -5.230 3.802 1.814 -3.877 0.922 0.4040837921 195 1.160 -5.230 3.802 1.814 -3.877 0.922 0.4040776908 204 1.160 -5.230 3.802 1.814 -3.877 0.753 0.4027047936 206 1.160 -5.230 3.802 1.814 -3.877 0.800 0.4021350428 207 1.160 -5.230 3.802 1.814 -3.877 0.846 0.4021235860 208 1.160 -5.230 3.802 1.814 -3.877 0.824 0.4020115709 217 1.160 -5.230 3.736 1.814 -3.877 0.824 0.4016903656 219 1.160 -5.230 3.742 1.814 -3.877 0.824 0.4016702053 220 1.160 -5.230 3.765 1.814 -3.877 0.824 0.4016541939 221 1.160 -5.230 3.757 1.814 -3.877 0.824 0.4016496646 222 1.160 -5.230 3.758 1.814 -3.877 0.824 0.4016493991 230 1.160 -5.230 3.758 1.784 -3.877 0.824 0.4013536998 231 1.160 -5.230 3.758 1.718 -3.877 0.824 0.4013451311 233 1.160 -5.230 3.758 1.751 -3.877 0.824 0.4011763944 235 1.160 -5.230 3.758 1.747 -3.877 0.824 0.4011757592 238 1.160 -5.230 3.758 1.748 -3.877 0.824 0.4011749680 246 1.160 -5.230 3.758 1.748 -3.797 0.824 0.3999262769 248 1.160 -5.230 3.758 1.748 -3.793 0.824 0.3999149204 249 1.160 -5.230 3.758 1.748 -3.789 0.824 0.3999105726 257 1.162 -5.422 3.801 1.615 -3.793 0.847 0.3995070957 258 1.161 -5.341 3.783 1.671 -3.791 0.837 0.3994970308 259 1.162 -5.379 3.791 1.645 -3.792 0.841 0.3994073599 260 1.162 -5.381 3.792 1.644 -3.792 0.842 0.3994051580 261 1.162 -5.396 3.795 1.633 -3.793 0.844 0.3994029631 263 1.162 -5.390 3.794 1.638 -3.793 0.843 0.3994004335 275 1.122 -5.390 3.794 1.638 -3.793 0.843 0.3981968361 276 1.083 -5.390 3.794 1.638 -3.793 0.843 0.3975199589 279 1.082 -5.390 3.794 1.638 -3.793 0.843 0.3975185301 287 1.082 -5.390 3.794 1.638 -3.793 0.722 0.3959918015 290 1.082 -5.390 3.794 1.638 -3.793 0.724 0.3959917683 298 1.082 -5.390 3.708 1.638 -3.793 0.724 0.3951121417 299 1.082 -5.390 3.645 1.638 -3.793 0.724 0.3950914672 305 1.082 -5.390 3.635 1.638 -3.793 0.724 0.3950892525 306 1.082 -5.390 3.638 1.638 -3.793 0.724 0.3950870637 307 1.082 -5.390 3.639 1.638 -3.793 0.724 0.3950870013 317 1.082 -5.390 3.639 1.634 -3.793 0.724 0.3950829083 318 1.082 -5.390 3.639 1.632 -3.793 0.724 0.3950823597 326 1.082 -5.390 3.639 1.632 -3.633 0.724 0.3909688871 330 1.082 -5.390 3.639 1.632 -3.632 0.724 0.3909688275 338 1.084 -5.582 3.682 1.499 -3.636 0.746 0.3907930937 339 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901962422 340 1.083 -5.492 3.662 1.561 -3.634 0.736 0.3901929019 341 1.083 -5.514 3.667 1.546 -3.635 0.738 0.3900474551 342 1.083 -5.540 3.673 1.528 -3.636 0.741 0.3900158474 343 1.083 -5.533 3.671 1.533 -3.635 0.741 0.3899890777 344 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899870352 345 1.083 -5.530 3.670 1.535 -3.635 0.740 0.3899867231 354 0.897 -5.530 3.670 1.535 -3.635 0.740 0.3893905885 355 0.966 -5.530 3.670 1.535 -3.635 0.740 0.3885125243 356 0.979 -5.530 3.670 1.535 -3.635 0.740 0.3884778139 357 0.984 -5.530 3.670 1.535 -3.635 0.740 0.3884597016 359 0.999 -5.530 3.670 1.535 -3.635 0.740 0.3884312519 361 1.000 -5.530 3.670 1.535 -3.635 0.740 0.3884308719 369 1.000 -5.530 3.670 1.535 -3.635 0.613 0.3859645524 371 1.000 -5.530 3.670 1.535 -3.635 0.645 0.3854689898 373 1.000 -5.530 3.670 1.535 -3.635 0.644 0.3854689500 381 1.000 -5.530 3.669 1.535 -3.635 0.644 0.3854570276 383 1.000 -5.530 3.639 1.535 -3.635 0.644 0.3852312564 385 1.000 -5.530 3.633 1.535 -3.635 0.644 0.3852157104 386 1.000 -5.530 3.630 1.535 -3.635 0.644 0.3852130412 387 1.000 -5.530 3.629 1.535 -3.635 0.644 0.3852128318 397 1.000 -5.530 3.629 1.546 -3.635 0.644 0.3851704032 399 1.000 -5.530 3.629 1.547 -3.635 0.644 0.3851697145 411 1.000 -5.530 3.629 1.547 -3.623 0.644 0.3851066343 421 0.999 -5.514 3.625 1.559 -3.623 0.642 0.3850790925 422 0.999 -5.515 3.626 1.557 -3.623 0.642 0.3850775991 423 0.999 -5.517 3.626 1.556 -3.623 0.643 0.3850767121 424 0.999 -5.518 3.626 1.556 -3.623 0.643 0.3850762962 427 0.999 -5.519 3.626 1.555 -3.623 0.643 0.3850762474 436 0.977 -5.515 3.614 1.561 -3.619 0.616 0.3847268755 437 0.967 -5.514 3.609 1.563 -3.618 0.605 0.3847038554 438 0.969 -5.514 3.610 1.563 -3.618 0.607 0.3847033048 439 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847030254 440 0.968 -5.514 3.610 1.563 -3.618 0.607 0.3847029014 452 0.931 -5.514 3.610 1.563 -3.618 0.607 0.3844474694 453 0.936 -5.514 3.610 1.563 -3.618 0.607 0.3844016973 454 0.943 -5.514 3.610 1.563 -3.618 0.607 0.3843628983 456 0.944 -5.514 3.610 1.563 -3.618 0.607 0.3843615000 457 0.945 -5.514 3.610 1.563 -3.618 0.607 0.3843614069 467 0.945 -5.521 3.611 1.558 -3.618 0.607 0.3843290456 470 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843112069 471 0.945 -5.530 3.613 1.552 -3.618 0.608 0.3843111615 472 0.945 -5.531 3.614 1.551 -3.618 0.609 0.3843109887 484 0.945 -5.531 3.627 1.551 -3.618 0.609 0.3842697066 486 0.945 -5.531 3.626 1.551 -3.618 0.609 0.3842689984 487 0.945 -5.531 3.625 1.551 -3.618 0.609 0.3842689165 497 0.945 -5.531 3.625 1.556 -3.618 0.609 0.3842677711 498 0.945 -5.531 3.625 1.554 -3.618 0.609 0.3842664342 507 0.945 -5.531 3.625 1.554 -3.586 0.609 0.3839528557 509 0.945 -5.531 3.625 1.554 -3.588 0.609 0.3839440941 510 0.945 -5.531 3.625 1.554 -3.591 0.609 0.3839416583 519 0.936 -5.530 3.620 1.557 -3.589 0.598 0.3839312125 520 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839291804 521 0.939 -5.530 3.621 1.556 -3.590 0.601 0.3839290531 535 0.920 -5.530 3.621 1.556 -3.590 0.601 0.3838190626 537 0.924 -5.530 3.621 1.556 -3.590 0.601 0.3838120151 549 0.924 -5.529 3.621 1.557 -3.590 0.601 0.3838119734 561 0.924 -5.529 3.631 1.557 -3.590 0.601 0.3837873452 580 0.924 -5.529 3.631 1.557 -3.572 0.601 0.3836780501 591 0.921 -5.528 3.630 1.557 -3.572 0.598 0.3836757641 592 0.921 -5.528 3.630 1.557 -3.572 0.597 0.3836755656 597 0.903 -5.527 3.638 1.559 -3.554 0.594 0.3835845407 604 0.895 -5.526 3.642 1.560 -3.546 0.592 0.3835794654 605 0.896 -5.526 3.641 1.560 -3.547 0.592 0.3835790712 606 0.897 -5.526 3.641 1.560 -3.548 0.593 0.3835789605 638 0.897 -5.510 3.638 1.571 -3.547 0.591 0.3835787626 639 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835746439 640 0.897 -5.518 3.640 1.565 -3.548 0.592 0.3835745538 642 0.897 -5.519 3.640 1.564 -3.548 0.593 0.3835743974 643 0.897 -5.520 3.640 1.564 -3.548 0.593 0.3835743327 651 0.897 -5.520 3.639 1.564 -3.548 0.593 0.3835741199 652 0.897 -5.520 3.638 1.564 -3.548 0.593 0.3835739882 654 0.897 -5.520 3.636 1.564 -3.548 0.593 0.3835739332 664 0.897 -5.520 3.636 1.563 -3.548 0.593 0.3835739007 674 0.897 -5.520 3.636 1.563 -3.547 0.593 0.3835737421 681 0.891 -5.519 3.639 1.564 -3.540 0.591 0.3835719195 682 0.893 -5.519 3.638 1.563 -3.542 0.592 0.3835711657 692 0.894 -5.519 3.638 1.563 -3.543 0.592 0.3835711591 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 1.013153 1 -25.0 -25.0 25.0 1.058806 2 -25.0 25.0 -25.0 1.045570 3 -25.0 25.0 25.0 1.063901 4 25.0 -25.0 -25.0 1.063232 5 25.0 -25.0 25.0 1.062666 6 25.0 25.0 -25.0 1.063291 7 25.0 25.0 25.0 1.068569 REL: 8 0.383571 8.439189 1.054899 rel = 0.36361 Number of iterations 7 Min cost was 0.383571 Number of FunctionCalls 693 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.975000 sec Parameters at optimum (transmm) 0.89362 -5.51934 3.63786 Parameters at optimum (rotdeg) 1.56335 -3.54278 0.59184 Costs at optimum 2281 0.6628 0.2750 31.6000 0.8341 0.3142 22.0390 0.3836 Reg at min cost was 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat, type = 14 Original Reg 0.998 -0.057 0.004 -1.600; -0.004 -0.002 1.000 -10.232; -0.057 -0.998 -0.002 -3.323; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.002 -0.062 0.012 -1.224; -0.012 -0.027 0.000 5.439; -0.062 0.001 -0.027 -3.268; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 7.081879 Computing change in rh position Surface RMS Diff (mm) 7.652021 10.099015 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.95 2010/05/05 17:47:38 greve Exp $ setenv SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data cd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data mri_segreg --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii --init-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat --out-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat.param --cur-reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab movvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/template.nii regfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/tmp.bbregister.54050/bbr.pass1.dat subject freesurfer dof 6 outregfile /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 DoPowell 1 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1369077325 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.017659 1 -25.0 -25.0 25.0 1.065419 2 -25.0 25.0 -25.0 1.016386 3 -25.0 25.0 25.0 1.050450 4 25.0 -25.0 -25.0 1.033962 5 25.0 -25.0 25.0 1.049765 6 25.0 25.0 -25.0 1.043729 7 25.0 25.0 25.0 1.070996 REL: 8 0.399041 8.348366 1.043546 rel = 0.38239 Initial costs ---------------- Number of surface hits -1 WM Intensity -1.9932 +/- 0.0000 Ctx Intensity 0.0000 +/- 0.0000 Pct Contrast -0.0000 +/- 0.0000 Cost -0.0000 RelCost 0.3824 WARNING: initial G-W contrast is negative, but expecting positive. If the mov data has a T1 contrast, re-run with --T1 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3932 0.3932 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.3896 0.3896 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.3882 0.3882 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.3864 0.3864 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.3862 0.3862 0.0 97 -0.1000 0.0000 -0.1000 0.0000 0.1000 0.0000 0.3849 0.3849 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.3843 0.3843 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3836 0.3836 0.0 Brute Force -------------------------- Min cost was 0.383571 Number of iterations 729 Search time 1.072000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 7 -0.143 0.000 0.000 0.000 0.000 0.000 0.3985947477 8 -0.127 0.000 0.000 0.000 0.000 0.000 0.3985907563 9 -0.131 0.000 0.000 0.000 0.000 0.000 0.3985902996 10 -0.132 0.000 0.000 0.000 0.000 0.000 0.3985902464 12 -0.133 0.000 0.000 0.000 0.000 0.000 0.3985901829 21 -0.133 0.031 0.000 0.000 0.000 0.000 0.3985422208 23 -0.133 0.025 0.000 0.000 0.000 0.000 0.3985384925 33 -0.133 0.024 0.382 0.000 0.000 0.000 0.3955914377 34 -0.133 0.024 0.329 0.000 0.000 0.000 0.3953062478 35 -0.133 0.024 0.288 0.000 0.000 0.000 0.3952498224 36 -0.133 0.024 0.293 0.000 0.000 0.000 0.3952468267 37 -0.133 0.024 0.296 0.000 0.000 0.000 0.3952464652 38 -0.133 0.024 0.295 0.000 0.000 0.000 0.3952464194 46 -0.133 0.024 0.295 0.123 0.000 0.000 0.3947974507 47 -0.133 0.024 0.295 0.120 0.000 0.000 0.3947944283 48 -0.133 0.024 0.295 0.111 0.000 0.000 0.3947922155 50 -0.133 0.024 0.295 0.113 0.000 0.000 0.3947918104 59 -0.133 0.024 0.295 0.114 0.108 0.000 0.3943948822 61 -0.133 0.024 0.295 0.114 0.091 0.000 0.3943800512 62 -0.133 0.024 0.295 0.114 0.092 0.000 0.3943798743 68 -0.133 0.024 0.295 0.114 0.092 -0.618 0.3892245715 70 -0.133 0.024 0.295 0.114 0.092 -0.504 0.3888437663 71 -0.133 0.024 0.295 0.114 0.092 -0.476 0.3888042851 83 -0.193 0.024 0.295 0.114 0.092 -0.476 0.3887751147 84 -0.170 0.024 0.295 0.114 0.092 -0.476 0.3887445973 85 -0.168 0.024 0.295 0.114 0.092 -0.476 0.3887434349 86 -0.161 0.024 0.295 0.114 0.092 -0.476 0.3887419289 88 -0.163 0.024 0.295 0.114 0.092 -0.476 0.3887418978 97 -0.163 0.096 0.295 0.114 0.092 -0.476 0.3884674076 99 -0.163 0.088 0.295 0.114 0.092 -0.476 0.3884628102 100 -0.163 0.087 0.295 0.114 0.092 -0.476 0.3884627619 108 -0.163 0.087 0.321 0.114 0.092 -0.476 0.3884140214 110 -0.163 0.087 0.326 0.114 0.092 -0.476 0.3884128733 119 -0.163 0.087 0.326 0.140 0.092 -0.476 0.3883672079 121 -0.163 0.087 0.326 0.143 0.092 -0.476 0.3883671635 123 -0.163 0.087 0.326 0.142 0.092 -0.476 0.3883671225 130 -0.163 0.087 0.326 0.142 0.224 -0.476 0.3878621347 131 -0.163 0.087 0.326 0.142 0.223 -0.476 0.3878612206 132 -0.163 0.087 0.326 0.142 0.211 -0.476 0.3878570950 144 -0.163 0.087 0.326 0.142 0.212 -0.500 0.3878281938 145 -0.163 0.087 0.326 0.142 0.212 -0.503 0.3878266281 147 -0.163 0.087 0.326 0.142 0.212 -0.506 0.3878262535 148 -0.163 0.087 0.326 0.142 0.212 -0.505 0.3878261972 150 -0.193 0.150 0.357 0.170 0.332 -0.534 0.3877013446 157 -0.181 0.125 0.345 0.159 0.285 -0.523 0.3875830306 159 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875815549 160 -0.182 0.128 0.346 0.160 0.290 -0.524 0.3875814980 172 -0.276 0.128 0.346 0.160 0.290 -0.524 0.3873284729 175 -0.284 0.128 0.346 0.160 0.290 -0.524 0.3873265784 176 -0.282 0.128 0.346 0.160 0.290 -0.524 0.3873261847 185 -0.282 0.121 0.346 0.160 0.290 -0.524 0.3873226515 196 -0.282 0.121 0.383 0.160 0.290 -0.524 0.3873106524 198 -0.282 0.121 0.367 0.160 0.290 -0.524 0.3872954561 200 -0.282 0.121 0.366 0.160 0.290 -0.524 0.3872954399 210 -0.282 0.121 0.366 0.156 0.290 -0.524 0.3872940597 211 -0.282 0.121 0.366 0.155 0.290 -0.524 0.3872939981 219 -0.282 0.121 0.366 0.155 0.290 -0.592 0.3872110852 220 -0.282 0.121 0.366 0.155 0.290 -0.580 0.3872086302 222 -0.282 0.121 0.366 0.155 0.290 -0.579 0.3872086258 231 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084376 235 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872084272 237 -0.283 0.123 0.367 0.156 0.293 -0.580 0.3872082552 246 -0.285 0.123 0.367 0.156 0.293 -0.580 0.3872077911 250 -0.298 0.123 0.367 0.156 0.293 -0.580 0.3872053814 252 -0.297 0.123 0.367 0.156 0.293 -0.580 0.3872053607 260 -0.297 0.124 0.367 0.156 0.293 -0.580 0.3872044882 261 -0.297 0.132 0.367 0.156 0.293 -0.580 0.3872009406 264 -0.297 0.131 0.367 0.156 0.293 -0.580 0.3872009379 275 -0.297 0.131 0.365 0.156 0.293 -0.580 0.3872008005 284 -0.297 0.131 0.365 0.168 0.293 -0.580 0.3871989623 286 -0.297 0.131 0.365 0.163 0.293 -0.580 0.3871976771 297 -0.297 0.131 0.365 0.163 0.293 -0.583 0.3871975995 306 -0.296 0.129 0.364 0.162 0.289 -0.581 0.3871926752 307 -0.291 0.118 0.359 0.157 0.268 -0.576 0.3871920010 309 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871863782 311 -0.294 0.123 0.361 0.160 0.278 -0.579 0.3871862269 324 -0.301 0.123 0.361 0.160 0.278 -0.579 0.3871855990 325 -0.299 0.123 0.361 0.160 0.278 -0.579 0.3871851294 334 -0.299 0.124 0.361 0.160 0.278 -0.579 0.3871842671 335 -0.299 0.133 0.361 0.160 0.278 -0.579 0.3871818538 337 -0.299 0.131 0.361 0.160 0.278 -0.579 0.3871814371 347 -0.299 0.131 0.358 0.160 0.278 -0.579 0.3871805819 358 -0.299 0.131 0.358 0.164 0.278 -0.579 0.3871793024 359 -0.299 0.131 0.358 0.165 0.278 -0.579 0.3871792906 368 -0.299 0.131 0.358 0.165 0.278 -0.583 0.3871789270 369 -0.299 0.131 0.358 0.165 0.278 -0.582 0.3871789071 370 -0.299 0.131 0.358 0.165 0.278 -0.581 0.3871786252 380 -0.297 0.128 0.357 0.163 0.273 -0.580 0.3871780292 382 -0.297 0.129 0.357 0.164 0.273 -0.580 0.3871779151 397 -0.296 0.129 0.357 0.164 0.273 -0.580 0.3871779108 405 -0.296 0.135 0.357 0.164 0.273 -0.580 0.3871773556 407 -0.296 0.132 0.357 0.164 0.273 -0.580 0.3871768371 428 -0.296 0.132 0.357 0.165 0.273 -0.580 0.3871767962 429 -0.296 0.132 0.357 0.166 0.273 -0.580 0.3871767886 438 -0.296 0.132 0.357 0.166 0.273 -0.584 0.3871764837 449 -0.296 0.132 0.356 0.166 0.272 -0.582 0.3871764773 453 -0.296 0.132 0.357 0.166 0.273 -0.582 0.3871764492 455 -0.295 0.135 0.356 0.168 0.272 -0.585 0.3871762311 462 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761684 468 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761649 469 -0.295 0.135 0.356 0.168 0.272 -0.584 0.3871761602 503 -0.295 0.135 0.355 0.168 0.272 -0.584 0.3871761349 531 -0.295 0.136 0.355 0.167 0.272 -0.585 0.3871760497 534 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 539 -0.295 0.136 0.355 0.167 0.272 -0.586 0.3871759730 575 -0.295 0.136 0.356 0.167 0.272 -0.586 0.3871759713 610 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759616 611 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759518 633 -0.295 0.136 0.356 0.168 0.272 -0.586 0.3871759358 643 -0.295 0.136 0.355 0.168 0.272 -0.586 0.3871759350 Powell done niters = 8 Computing relative cost 0 -25.0 -25.0 -25.0 1.018295 1 -25.0 -25.0 25.0 1.065241 2 -25.0 25.0 -25.0 1.020058 3 -25.0 25.0 25.0 1.055383 4 25.0 -25.0 -25.0 1.036075 5 25.0 -25.0 25.0 1.050567 6 25.0 25.0 -25.0 1.043855 7 25.0 25.0 25.0 1.069080 REL: 8 0.387176 8.358553 1.044819 rel = 0.370567 Number of iterations 8 Min cost was 0.387176 Number of FunctionCalls 682 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 91.098000 sec Parameters at optimum (transmm) -0.29477 0.13618 0.35526 Parameters at optimum (rotdeg) 0.16728 0.27177 -0.58568 Costs at optimum 227537 0.6571 0.2657 30.3707 0.8299 0.3070 22.3892 0.3872 Reg at min cost was 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Writing optimal reg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 1.000 0.005 -0.008 -0.376; 0.008 0.026 1.000 -15.671; 0.005 -1.000 0.026 -0.055; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 0.004 -0.010 0.455; 0.010 -0.003 0.000 -0.141; 0.005 -0.000 -0.003 -0.311; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.693981 Computing change in rh position Surface RMS Diff (mm) 0.610632 1.160309 WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1 mri_segreg done tkregister2_cmdl --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer5.1/lib/tcl/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz reg file /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.117.2.1 2010/08/02 17:42:03 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz Tmov: -------------------- -4.000 0.000 0.000 128.000; 0.000 0.000 4.000 -60.000; 0.000 -4.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; Determinant 1 subject = freesurfer RegMat --------------------------- 1.000 0.000 0.002 -0.831; -0.002 0.029 1.000 -15.530; 0.000 -1.000 0.029 0.256; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -64, ref det = -1 Cleaning up Started at Tue May 14 10:01:17 CDT 2013 Ended at Tue May 14 10:03:50 CDT 2013 BBR-Run-Time-Sec 153 bbregister Done To check results, run: tkregister2 --mov /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dwi.nii.gz --reg /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2diff.bbr.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2anatorig.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Tue May 14 10:03:50 CDT 2013 flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/brain_anat_mni.nii.gz -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anat.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.bbr.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat -concat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anat2mni.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2anat.mat convert_xfm -omat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2anatorig.mat -inverse /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue May 14 10:06:52 CDT 2013 mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 420047 values in range Counting number of voxels Found 420047 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 442102 values in range Counting number of voxels Found 442102 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 18636 values in range Counting number of voxels Found 18636 voxels in final mask mri_binarize done mri_aparc2aseg --s freesurfer --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data subject freesurfer outvol /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.white Reading lh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/lh.pial Loading lh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Reading rh white surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.white Reading rh pial surface /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/surf/rh.pial Loading rh annotations from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_final.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/ribbon.mgz Loading filled from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838430 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 10 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 4.000000 4 k 753.000000 5 k 1.000000 6 k 6.000000 7 k 1.000000 8 k 1.000000 9 k 1.000000 Fixing Parahip RH WM Found 5 clusters 0 k 1.000000 1 k 6.000000 2 k 2.000000 3 k 1.000000 4 k 722.000000 Writing output aseg to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 444728 values in range Counting number of voxels Found 444728 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 696836 values in range Counting number of voxels Found 696836 voxels in final mask mri_binarize done mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.23.2.1 2010/07/28 20:07:29 greve Exp $ cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline mri_binarize --i /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz --match 16 --o /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab input /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 16976 values in range Counting number of voxels Found 16976 voxels in final mask mri_binarize done fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm.nii.gz -add /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/Brain-Stem.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/brainmask.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask.nii.gz -mul /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/notventricles.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data/freesurfer/mri/aparc+aseg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/anatorig/White-Matter.nii.gz x z -y 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/BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.flt.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat flirt -in /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Tue May 14 10:14:44 CDT 2013 /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.51851.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt --slist /tmp/subj23.freesurfer.51851.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_flt rh.cst_AS_avg23_mni_flt lh.ilf_AS_avg23_mni_flt rh.ilf_AS_avg23_mni_flt lh.unc_AS_avg23_mni_flt rh.unc_AS_avg23_mni_flt fmajor_PP_avg23_mni_flt fminor_PP_avg23_mni_flt lh.atr_PP_avg23_mni_flt rh.atr_PP_avg23_mni_flt lh.cab_PP_avg23_mni_flt rh.cab_PP_avg23_mni_flt lh.ccg_PP_avg23_mni_flt rh.ccg_PP_avg23_mni_flt lh.slfp_PP_avg23_mni_flt rh.slfp_PP_avg23_mni_flt lh.slft_PP_avg23_mni_flt rh.slft_PP_avg23_mni_flt Training subject directory list: /private/tmp/subj23.freesurfer.51851.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.flt.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 898 streamlines for straying off mask INFO: Rejected 75 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 5062 total streamlines (min/mean/max length: 62/100/132) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2859 non-truncated streamlines (min/mean/max length: 65/100/132) INFO: Center of mass of start points: (97+/-4, 98+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 76+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34329 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 100 98 32 100 105 47 113 110 86 113 105 121 114 105 141 INFO: Distances between consecutive points are 17 41 35 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 218.293 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk INFO: Rejected 929 streamlines for straying off mask INFO: Rejected 889 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4245 total streamlines (min/mean/max length: 50/97/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2597 non-truncated streamlines (min/mean/max length: 52/97/137) INFO: Center of mass of start points: (78+/-8, 100+/-9, 68+/-45) INFO: Center of mass of midpoints: (81+/-3, 99+/-6, 46+/-14) INFO: Center of mass of end points: (71+/-10, 102+/-9, 115+/-44) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 36155 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 98 36 73 108 61 63 111 88 68 103 139 67 103 146 INFO: Distances between consecutive points are 29 29 52 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.nii.gz Done in 149.675 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk INFO: Rejected 246 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2078 total streamlines (min/mean/max length: 44/87/121) Processing pathway 3 of 18... Matching streamline ends INFO: Have 794 non-truncated streamlines (min/mean/max length: 51/96/121) INFO: Center of mass of start points: (124+/-15, 100+/-44, 50+/-15) INFO: Center of mass of midpoints: (133+/-5, 129+/-3, 43+/-6) INFO: Center of mass of end points: (120+/-15, 75+/-43, 62+/-18) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23586 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 138 133 40 133 110 55 131 86 63 118 64 71 107 49 56 INFO: Distances between consecutive points are 28 25 27 24 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 98 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 137 133 40 134 110 54 131 86 63 118 64 71 107 48 56 INFO: Distances between consecutive points are 27 26 27 25 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 138 133 40 130 85 63 121 67 70 109 49 67 107 48 56 INFO: Distances between consecutive points are 54 21 22 11 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 65.021 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk INFO: Rejected 131 streamlines for straying off mask INFO: Rejected 25 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1111 total streamlines (min/mean/max length: 52/92/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 486 non-truncated streamlines (min/mean/max length: 58/103/123) INFO: Center of mass of start points: (53+/-11, 124+/-36, 43+/-13) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 41+/-5) INFO: Center of mass of end points: (65+/-13, 59+/-36, 68+/-18) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 19323 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 110 57 50 86 65 64 59 75 70 40 59 INFO: Distances between consecutive points are 32 25 32 26 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 40 48 112 56 49 87 66 61 62 75 71 40 64 INFO: Distances between consecutive points are 29 27 29 27 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 47 147 42 47 124 49 45 99 59 54 74 71 73 45 75 INFO: Distances between consecutive points are 24 27 29 35 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 42 136 39 49 115 53 49 90 61 61 67 75 77 40 78 INFO: Distances between consecutive points are 26 26 29 32 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 46 147 42 48 125 48 45 100 58 53 76 69 66 50 73 INFO: Distances between consecutive points are 23 27 28 29 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 42 136 40 48 124 46 50 87 64 67 55 77 77 40 78 INFO: Distances between consecutive points are 15 41 38 18 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.nii.gz Done in 100.783 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk INFO: Rejected 4212 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 58 total streamlines (min/mean/max length: 1/14/32) Processing pathway 5 of 18... Matching streamline ends INFO: Have 29 non-truncated streamlines (min/mean/max length: 10/13/21) INFO: Center of mass of start points: (125+/-1, 132+/-4, 47+/-6) INFO: Center of mass of midpoints: (126+/-2, 131+/-2, 47+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 51+/-5) INFO: Split streamlines into 3 segments Computing path histograms INFO: Total streamline volume is 442 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 130 50 126 128 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 125 126 51 123 126 48 122 128 45 120 130 43 INFO: Distances between consecutive points are 3 4 4 3 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 127 50 131 132 49 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 125 132 45 125 130 48 126 129 51 126 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 128 54 126 129 51 126 130 49 126 131 47 125 135 43 INFO: Distances between consecutive points are 3 2 2 6 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 134 44 125 132 45 125 131 47 126 129 50 126 128 54 INFO: Distances between consecutive points are 2 2 4 4 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 45 126 132 47 126 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 43 126 132 45 126 130 48 127 129 51 127 128 54 INFO: Distances between consecutive points are 4 4 3 3 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 44 125 133 45 125 132 47 125 130 49 126 129 54 INFO: Distances between consecutive points are 2 2 3 5 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 135 45 124 133 45 126 131 47 127 129 49 127 128 54 INFO: Distances between consecutive points are 2 3 3 5 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 125 135 44 125 133 46 125 131 48 126 130 50 126 129 54 INFO: Distances between consecutive points are 3 3 2 4 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 130 52 126 130 50 125 131 48 125 134 44 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 45 124 132 46 125 130 47 126 129 49 127 129 54 INFO: Distances between consecutive points are 2 2 2 5 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 129 54 126 129 52 126 130 50 126 131 48 125 135 44 INFO: Distances between consecutive points are 2 2 2 6 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 125 132 45 125 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 134 44 124 131 45 126 129 48 126 128 51 127 128 54 INFO: Distances between consecutive points are 3 4 3 3 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 132 45 125 131 47 125 130 49 125 129 54 INFO: Distances between consecutive points are 3 2 2 5 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 43 124 131 46 124 130 48 125 129 51 125 128 54 INFO: Distances between consecutive points are 4 2 3 3 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 124 134 44 124 132 45 124 131 47 125 130 50 125 129 54 INFO: Distances between consecutive points are 2 2 3 4 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 129 54 127 129 52 127 130 50 127 131 48 125 136 44 INFO: Distances between consecutive points are 2 2 2 7 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 135 43 126 132 45 127 130 48 128 128 52 127 127 55 INFO: Distances between consecutive points are 4 4 5 3 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 43 124 130 46 125 128 49 125 127 51 126 126 56 INFO: Distances between consecutive points are 4 4 2 5 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 14 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 122 133 42 124 130 45 125 128 48 125 127 51 126 126 55 INFO: Distances between consecutive points are 5 4 3 4 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 11 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 55 126 128 53 126 128 51 126 129 49 127 133 48 INFO: Distances between consecutive points are 2 2 2 4 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 10 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 136 46 126 134 48 127 132 49 127 130 51 127 129 54 INFO: Distances between consecutive points are 3 2 3 3 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 15 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 127 126 53 127 127 50 128 130 47 130 135 47 INFO: Distances between consecutive points are 3 3 4 5 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 126 56 126 126 52 126 127 47 126 129 43 124 133 40 INFO: Distances between consecutive points are 4 5 4 5 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 17 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 125 57 127 124 53 128 125 49 129 129 44 130 133 42 INFO: Distances between consecutive points are 4 4 6 5 WARN: Could not find satisfactory control point fit - try 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 26.682 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk INFO: Rejected 669 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 4 streamlines as length outliers INFO: Have 4972 total streamlines (min/mean/max length: 9/64/102) Processing pathway 6 of 18... Matching streamline ends INFO: Have 3858 non-truncated streamlines (min/mean/max length: 9/65/102) INFO: Center of mass of start points: (59+/-11, 151+/-14, 47+/-8) INFO: Center of mass of midpoints: (53+/-4, 133+/-2, 44+/-3) INFO: Center of mass of end points: (66+/-12, 157+/-16, 52+/-9) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 20129 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 55 145 40 52 133 44 57 129 59 75 159 62 77 172 59 INFO: Distances between consecutive points are 13 16 35 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.nii.gz Done in 111.923 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk INFO: Rejected 3142 streamlines for straying off mask INFO: Rejected 182 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 4120 total streamlines (min/mean/max length: 80/129/158) Processing pathway 7 of 18... Matching streamline ends INFO: Have 3167 non-truncated streamlines (min/mean/max length: 80/131/158) INFO: Center of mass of start points: (89+/-15, 40+/-11, 100+/-16) INFO: Center of mass of midpoints: (106+/-5, 45+/-10, 94+/-13) INFO: Center of mass of end points: (87+/-16, 40+/-10, 101+/-16) INFO: Split streamlines into 33 segments Computing path histograms INFO: Total streamline volume is 49457 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 112 116 54 86 95 89 84 63 67 87 72 39 109 INFO: Distances between consecutive points are 34 41 39 37 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 59 66 92 90 91 83 116 63 89 99 37 105 INFO: Distances between consecutive points are 33 41 39 35 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 77 41 103 60 66 92 89 91 83 116 64 89 98 37 104 INFO: Distances between consecutive points are 32 39 39 36 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 42 103 59 65 91 88 91 83 116 65 90 98 36 103 INFO: Distances between consecutive points are 33 40 39 37 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 37 104 116 61 88 91 90 82 60 67 92 77 41 103 INFO: Distances between consecutive points are 34 39 40 33 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 118 63 86 90 90 83 62 65 88 77 39 110 INFO: Distances between consecutive points are 36 39 38 37 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 103 59 65 92 91 91 83 117 61 88 98 34 103 INFO: Distances between consecutive points are 33 42 40 36 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 41 104 59 66 92 90 91 83 117 62 89 98 36 103 INFO: Distances between consecutive points are 34 41 40 35 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 66 88 91 89 84 116 60 89 98 45 116 INFO: Distances between consecutive points are 36 36 39 36 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 39 108 117 60 85 96 90 83 64 72 87 72 38 97 INFO: Distances between consecutive points are 35 37 37 36 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 89 89 84 116 62 88 97 45 116 INFO: Distances between consecutive points are 36 35 38 38 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 62 69 86 93 87 83 118 59 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 38 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 37 105 61 68 86 92 87 83 119 61 87 98 38 112 INFO: Distances between consecutive points are 39 36 38 40 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 157 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 36 109 120 60 86 91 93 84 58 66 89 79 39 104 INFO: Distances between consecutive points are 37 44 43 37 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 103 38 92 113 67 84 85 90 84 62 60 86 72 38 109 INFO: Distances between consecutive points are 32 36 38 33 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 125 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 37 101 116 62 89 92 89 85 63 71 87 72 41 104 INFO: Distances between consecutive points are 30 36 34 36 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 91 89 83 115 61 89 98 45 116 INFO: Distances between consecutive points are 36 36 37 36 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 107 64 65 88 90 89 83 114 62 88 98 45 114 INFO: Distances between consecutive points are 36 36 36 35 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 39 101 63 71 86 93 86 82 118 60 87 98 38 111 INFO: Distances between consecutive points are 37 34 36 38 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 151 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 64 86 90 93 84 58 69 88 78 39 101 INFO: Distances between consecutive points are 39 42 40 38 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 72 37 103 INFO: Distances between consecutive points are 31 35 34 37 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 64 78 86 99 89 83 120 58 86 102 38 109 INFO: Distances between consecutive points are 36 37 38 35 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 64 84 99 37 105 INFO: Distances between consecutive points are 38 36 36 38 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 122 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 40 108 113 63 89 89 90 86 62 66 92 73 42 97 INFO: Distances between consecutive points are 33 36 37 27 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 36 104 116 62 84 92 88 81 63 67 84 75 36 103 INFO: Distances between consecutive points are 37 36 36 38 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 118 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 93 67 75 87 96 90 85 115 63 85 99 41 105 INFO: Distances between consecutive points are 32 33 33 34 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 98 90 83 64 78 86 75 44 93 INFO: Distances between consecutive points are 37 38 36 36 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 121 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 90 86 82 62 68 86 73 44 106 INFO: Distances between consecutive points are 31 35 34 33 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 35 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 94 40 104 120 59 85 97 90 83 63 77 87 74 44 92 INFO: Distances between consecutive points are 37 39 37 35 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 98 89 83 120 60 86 95 40 104 INFO: Distances between consecutive points are 36 36 37 37 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 85 98 89 82 64 77 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 35 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 109 114 62 85 95 90 84 66 72 87 81 44 87 INFO: Distances between consecutive points are 35 34 34 32 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 129 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 41 108 115 63 85 95 90 85 66 71 87 81 44 90 INFO: Distances between consecutive points are 36 34 35 31 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 62 84 99 37 105 INFO: Distances between consecutive points are 38 35 37 37 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 88 82 116 65 84 99 37 104 INFO: Distances between consecutive points are 38 35 35 38 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 117 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 40 100 118 65 87 91 86 82 63 69 86 74 39 101 INFO: Distances between consecutive points are 31 35 33 35 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 62 75 87 94 91 83 120 65 86 100 40 102 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 150 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 103 55 66 84 85 91 83 119 69 89 93 38 103 INFO: Distances between consecutive points are 41 39 41 43 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 123 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 81 44 90 65 69 87 90 90 84 116 68 85 102 41 106 INFO: Distances between consecutive points are 30 33 34 37 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 90 89 82 116 63 84 99 36 103 INFO: Distances between consecutive points are 38 36 37 37 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 148 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 64 84 83 90 82 118 71 88 93 38 103 INFO: Distances between consecutive points are 40 38 40 44 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 78 41 95 62 75 86 95 91 82 119 62 85 94 40 104 INFO: Distances between consecutive points are 39 37 38 38 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 40 104 56 66 85 85 90 83 119 69 89 94 42 105 INFO: Distances between consecutive points are 40 38 40 40 WARN: Could not find satisfactory control point fit - try 46 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 56 67 85 85 90 82 119 68 89 93 39 104 INFO: Distances between consecutive points are 41 37 41 42 WARN: Could not find satisfactory control point fit - try 47 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 76 42 105 63 67 84 86 92 84 114 72 89 100 37 87 INFO: Distances between consecutive points are 35 34 35 38 WARN: Could not find satisfactory control point fit - try 48 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 39 104 55 66 84 84 91 83 119 70 89 94 39 104 INFO: Distances between consecutive points are 42 38 41 43 WARN: Could not find satisfactory control point fit - try 49 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 60 86 98 89 82 64 78 86 74 44 92 INFO: Distances between consecutive points are 37 37 36 36 WARN: Could not find satisfactory control point fit - try 50 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 142 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 60 84 102 34 102 INFO: Distances between consecutive points are 39 36 38 35 WARN: Could not find satisfactory control point fit - try 51 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 57 88 90 86 85 60 64 90 73 36 104 INFO: Distances between consecutive points are 30 37 38 34 WARN: Could not find satisfactory control point fit - try 52 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 103 63 67 84 93 88 81 117 61 84 98 35 103 INFO: Distances between consecutive points are 38 37 36 37 WARN: Could not find satisfactory control point fit - try 53 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 40 104 120 59 86 99 89 83 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 54 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 36 102 61 64 89 86 87 85 112 62 89 99 35 100 INFO: Distances between consecutive points are 33 34 36 32 WARN: Could not find satisfactory control point fit - try 55 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 95 41 104 120 59 85 99 89 82 65 79 86 74 44 92 INFO: Distances between consecutive points are 36 37 36 37 WARN: Could not find satisfactory control point fit - try 56 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 128 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 35 102 61 63 89 85 87 85 111 63 88 99 35 100 INFO: Distances between consecutive points are 33 34 36 33 WARN: Could not find satisfactory control point fit - try 57 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 133 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 104 39 105 115 63 90 87 89 82 60 63 84 79 32 88 INFO: Distances between consecutive points are 30 39 38 37 WARN: Could not find satisfactory control point fit - try 58 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 66 88 88 91 83 55 69 85 80 39 98 INFO: Distances between consecutive points are 42 41 40 41 WARN: Could not find satisfactory control point fit - try 59 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 74 44 92 64 78 86 97 90 82 120 63 85 98 34 99 INFO: Distances between consecutive points are 36 35 36 39 WARN: Could not find satisfactory control point fit - try 60 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 120 67 88 88 91 83 55 69 85 80 39 97 INFO: Distances between consecutive points are 42 40 40 41 WARN: Could not find satisfactory control point fit - try 61 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 104 119 65 88 89 90 82 56 71 85 80 39 97 INFO: Distances between consecutive points are 41 40 38 42 WARN: Could not find satisfactory control point fit - try 62 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 90 87 84 61 64 89 73 35 102 INFO: Distances between consecutive points are 32 35 37 34 WARN: Could not find satisfactory control point fit - try 63 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 66 84 93 88 81 117 61 83 98 34 102 INFO: Distances between consecutive points are 38 37 36 38 WARN: Could not find satisfactory control point fit - try 64 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 135 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 112 56 88 92 85 85 61 66 90 75 37 107 INFO: Distances between consecutive points are 29 35 37 36 WARN: Could not find satisfactory control point fit - try 65 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 39 103 64 68 82 91 90 81 117 63 84 98 35 103 INFO: Distances between consecutive points are 39 35 38 39 WARN: Could not find satisfactory control point fit - try 66 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 127 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 98 35 103 116 59 84 97 86 81 66 74 85 79 43 101 INFO: Distances between consecutive points are 36 33 33 37 WARN: Could not find satisfactory control point fit - try 67 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 130 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 115 60 92 92 86 85 61 71 92 73 37 96 INFO: Distances between consecutive points are 32 35 35 36 WARN: Could not find satisfactory control point fit - try 68 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 80 38 98 55 67 84 84 91 83 118 71 89 94 42 106 INFO: Distances between consecutive points are 41 38 40 41 WARN: Could not find satisfactory control point fit - try 69 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 59 87 91 87 84 62 67 89 74 36 102 INFO: Distances between consecutive points are 32 35 36 36 WARN: Could not find satisfactory control point fit - try 70 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 75 36 104 63 67 84 92 88 81 117 62 83 98 34 102 INFO: Distances between consecutive points are 39 36 36 39 WARN: Could not find satisfactory control point fit - try 71 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 104 115 60 92 93 86 85 61 73 92 72 38 100 INFO: Distances between consecutive points are 32 35 35 38 WARN: Could not find satisfactory control point fit - try 72 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 131 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 99 34 102 111 58 88 92 86 84 61 66 89 74 36 103 INFO: Distances between consecutive points are 30 34 37 36 WARN: Could not find satisfactory control point fit - try 73 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 140 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 101 34 103 116 63 93 90 87 86 59 69 93 72 39 109 INFO: Distances between consecutive points are 34 36 37 36 WARN: Could not find satisfactory control point fit - try 74 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 139 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 102 33 100 117 61 84 95 90 81 64 70 81 75 36 104 INFO: Distances between consecutive points are 36 37 37 42 WARN: Could not find satisfactory control point fit - try 75 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 93 38 103 119 63 88 94 90 83 60 79 86 72 42 93 INFO: Distances between consecutive points are 39 37 36 40 WARN: Could not find satisfactory control point fit - try 76 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 132 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 79 44 101 64 72 83 97 88 81 116 59 84 98 34 103 INFO: Distances between consecutive points are 37 37 35 36 WARN: Could not find satisfactory control point fit - try 77 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 95 36 92 119 70 88 80 90 82 57 62 84 80 39 97 INFO: Distances between consecutive points are 42 44 36 35 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 2530.04 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk INFO: Rejected 1207 streamlines for straying off mask INFO: Rejected 351 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 13034 total streamlines (min/mean/max length: 51/83/109) Processing pathway 8 of 18... Matching streamline ends INFO: Have 10164 non-truncated streamlines (min/mean/max length: 53/85/112) INFO: Center of mass of start points: (91+/-13, 186+/-6, 76+/-12) INFO: Center of mass of midpoints: (107+/-3, 174+/-3, 73+/-10) INFO: Center of mass of end points: (91+/-13, 186+/-6, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 44863 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 82 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 85 191 81 72 166 72 93 154 76 109 169 71 101 182 78 INFO: Distances between consecutive points are 30 25 22 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.nii.gz Done in 742.159 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk INFO: Rejected 84 streamlines for straying off mask INFO: Rejected 13 streamlines for reversing direction INFO: Rejected 32 streamlines as length outliers INFO: Have 8985 total streamlines (min/mean/max length: 30/58/86) Processing pathway 9 of 18... Matching streamline ends INFO: Have 3541 non-truncated streamlines (min/mean/max length: 37/67/85) INFO: Center of mass of start points: (104+/-12, 144+/-33, 75+/-10) INFO: Center of mass of midpoints: (110+/-2, 151+/-2, 77+/-7) INFO: Center of mass of end points: (107+/-14, 150+/-32, 78+/-11) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 32785 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 97 119 80 101 127 78 108 140 78 111 173 70 107 181 67 INFO: Distances between consecutive points are 9 15 34 9 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 318.739 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk INFO: Rejected 164 streamlines for straying off mask INFO: Rejected 43 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 7551 total streamlines (min/mean/max length: 31/60/87) Processing pathway 10 of 18... Matching streamline ends INFO: Have 3430 non-truncated streamlines (min/mean/max length: 42/68/87) INFO: Center of mass of start points: (71+/-11, 166+/-30, 80+/-11) INFO: Center of mass of midpoints: (69+/-2, 153+/-2, 78+/-6) INFO: Center of mass of end points: (79+/-6, 132+/-30, 79+/-8) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 29975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 75 194 84 77 190 83 67 165 76 68 148 80 83 116 76 INFO: Distances between consecutive points are 5 28 17 36 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.nii.gz Done in 254.182 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk INFO: Rejected 1937 streamlines for straying off mask INFO: Rejected 17 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1132 total streamlines (min/mean/max length: 1/33/72) Processing pathway 11 of 18... Matching streamline ends INFO: Have 475 non-truncated streamlines (min/mean/max length: 14/38/70) INFO: Center of mass of start points: (116+/-5, 106+/-12, 50+/-10) INFO: Center of mass of midpoints: (109+/-4, 85+/-2, 70+/-3) INFO: Center of mass of end points: (111+/-6, 81+/-12, 74+/-12) INFO: Split streamlines into 7 segments Computing path histograms INFO: Total streamline volume is 6794 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 31 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 118 108 45 117 105 48 110 95 61 109 87 68 109 82 73 INFO: Distances between consecutive points are 4 18 11 7 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 13.984 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk INFO: Rejected 326 streamlines for straying off mask INFO: Rejected 101 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2619 total streamlines (min/mean/max length: 11/40/99) Processing pathway 12 of 18... Matching streamline ends INFO: Have 855 non-truncated streamlines (min/mean/max length: 13/46/99) INFO: Center of mass of start points: (63+/-4, 114+/-14, 47+/-10) INFO: Center of mass of midpoints: (70+/-4, 87+/-2, 70+/-3) INFO: Center of mass of end points: (69+/-5, 82+/-12, 78+/-12) INFO: Split streamlines into 9 segments Computing path histograms INFO: Total streamline volume is 12804 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 2 voxels INFO: Length of center streamline is 57 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 62 123 41 67 115 42 67 111 43 70 83 74 66 72 80 INFO: Distances between consecutive points are 9 4 42 13 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.nii.gz Done in 21.512 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk INFO: Rejected 42 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 4065 total streamlines (min/mean/max length: 27/64/134) Processing pathway 13 of 18... Matching streamline ends INFO: Have 2431 non-truncated streamlines (min/mean/max length: 27/67/134) INFO: Center of mass of start points: (98+/-4, 128+/-33, 97+/-11) INFO: Center of mass of midpoints: (99+/-2, 94+/-4, 105+/-2) INFO: Center of mass of end points: (99+/-4, 97+/-30, 102+/-9) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16360 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 101 157 87 97 141 95 97 125 102 98 100 104 101 83 103 INFO: Distances between consecutive points are 18 17 25 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 80.454 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk INFO: Rejected 118 streamlines for straying off mask INFO: Rejected 1 streamlines for reversing direction INFO: Rejected 25 streamlines as length outliers INFO: Have 3528 total streamlines (min/mean/max length: 29/62/125) Processing pathway 14 of 18... Matching streamline ends INFO: Have 2234 non-truncated streamlines (min/mean/max length: 30/65/125) INFO: Center of mass of start points: (81+/-4, 119+/-33, 99+/-10) INFO: Center of mass of midpoints: (79+/-2, 95+/-3, 105+/-3) INFO: Center of mass of end points: (81+/-4, 105+/-31, 101+/-10) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 16105 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 83 145 96 83 136 102 82 112 104 76 82 104 77 74 106 INFO: Distances between consecutive points are 11 24 31 8 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.nii.gz Done in 55.117 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk INFO: Rejected 564 streamlines for straying off mask INFO: Rejected 250 streamlines for reversing direction INFO: Rejected 6 streamlines as length outliers INFO: Have 5750 total streamlines (min/mean/max length: 23/58/100) Processing pathway 15 of 18... Matching streamline ends INFO: Have 2878 non-truncated streamlines (min/mean/max length: 30/65/100) INFO: Center of mass of start points: (143+/-8, 113+/-21, 99+/-13) INFO: Center of mass of midpoints: (131+/-6, 118+/-3, 99+/-5) INFO: Center of mass of end points: (144+/-8, 98+/-22, 106+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 37225 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 146 129 104 128 115 100 129 89 102 137 86 106 144 88 113 INFO: Distances between consecutive points are 23 26 9 10 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 160.968 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk INFO: Rejected 637 streamlines for straying off mask INFO: Rejected 476 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 8195 total streamlines (min/mean/max length: 20/62/124) Processing pathway 16 of 18... Matching streamline ends INFO: Have 3949 non-truncated streamlines (min/mean/max length: 27/68/125) INFO: Center of mass of start points: (35+/-8, 121+/-21, 99+/-13) INFO: Center of mass of midpoints: (47+/-6, 121+/-2, 99+/-6) INFO: Center of mass of end points: (39+/-9, 91+/-23, 110+/-13) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 48752 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 32 135 103 35 131 100 52 119 100 53 81 101 41 74 115 INFO: Distances between consecutive points are 6 21 38 20 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.nii.gz Done in 326.431 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk INFO: Rejected 625 streamlines for straying off mask INFO: Rejected 34 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3430 total streamlines (min/mean/max length: 34/86/148) Processing pathway 17 of 18... Matching streamline ends INFO: Have 2415 non-truncated streamlines (min/mean/max length: 37/89/148) INFO: Center of mass of start points: (144+/-7, 105+/-26, 77+/-17) INFO: Center of mass of midpoints: (129+/-4, 117+/-3, 98+/-4) INFO: Center of mass of end points: (144+/-7, 108+/-26, 83+/-18) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 30284 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 148 92 61 137 85 65 122 79 94 126 104 103 138 122 96 INFO: Distances between consecutive points are 14 33 27 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 84.46 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk INFO: Rejected 165 streamlines for straying off mask INFO: Rejected 35 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1652 total streamlines (min/mean/max length: 30/85/128) Processing pathway 18 of 18... Matching streamline ends INFO: Have 992 non-truncated streamlines (min/mean/max length: 57/89/128) INFO: Center of mass of start points: (36+/-8, 114+/-28, 88+/-18) INFO: Center of mass of midpoints: (52+/-5, 119+/-3, 101+/-5) INFO: Center of mass of end points: (36+/-8, 101+/-28, 81+/-17) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 21265 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 31 132 105 53 118 104 54 96 105 53 79 90 36 79 67 INFO: Distances between consecutive points are 26 22 23 29 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 30 130 106 53 117 104 54 92 104 53 78 89 36 79 67 INFO: Distances between consecutive points are 26 25 21 28 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.nii.gz Done in 50.239 sec. dmri_train done img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cst_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ilf_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.unc_AS_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fmajor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fmajor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/fminor_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/fminor_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.atr_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.cab_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.ccg_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slfp_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lh.slft_PP_avg23_mni_flt_cpts_5_std.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5.txt img2imgcoord -src /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/lowb_brain_mask.flt.nii.gz -dest /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/lowb_brain_mask.nii.gz -xfm /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/xfms/mni2diff.flt.mat /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt | sed -n "2,6 p" > /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/diff/rh.slft_PP_avg23_mni_flt_cpts_5_std.txt /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.51851.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug cwd /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data cmdline /usr/local/freesurfer5.1/bin/dmri_train --outdir /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni --out lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr --slist /tmp/subj23.freesurfer.51851.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz --fa /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/data/MRI/N1006/data//freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz --ncpts 5 --trunc --debug sysname Darwin hostname cerebrum.uwm.edu machine i386 user brainlab Output directory: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni Output base: lh.cst_AS_avg23_mni_bbr rh.cst_AS_avg23_mni_bbr lh.ilf_AS_avg23_mni_bbr rh.ilf_AS_avg23_mni_bbr lh.unc_AS_avg23_mni_bbr rh.unc_AS_avg23_mni_bbr fmajor_PP_avg23_mni_bbr fminor_PP_avg23_mni_bbr lh.atr_PP_avg23_mni_bbr rh.atr_PP_avg23_mni_bbr lh.cab_PP_avg23_mni_bbr rh.cab_PP_avg23_mni_bbr lh.ccg_PP_avg23_mni_bbr rh.ccg_PP_avg23_mni_bbr lh.slfp_PP_avg23_mni_bbr rh.slfp_PP_avg23_mni_bbr lh.slft_PP_avg23_mni_bbr rh.slft_PP_avg23_mni_bbr Training subject directory list: /private/tmp/subj23.freesurfer.51851.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dmri/mni/dtifit_FA.bbr.nii.gz Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 928 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 5020 total streamlines (min/mean/max length: 63/100/130) Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 2639 non-truncated streamlines (min/mean/max length: 66/100/133) INFO: Center of mass of start points: (97+/-4, 99+/-6, 37+/-11) INFO: Center of mass of midpoints: (111+/-3, 110+/-3, 77+/-6) INFO: Center of mass of end points: (113+/-8, 106+/-9, 141+/-7) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 33771 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 96 98 30 100 105 46 112 112 76 112 106 120 112 111 145 INFO: Distances between consecutive points are 18 33 44 25 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 212.393 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1040 streamlines for straying off mask INFO: Rejected 726 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4297 total streamlines (min/mean/max length: 51/98/138) Processing pathway 2 of 18... Matching streamline ends INFO: Have 2557 non-truncated streamlines (min/mean/max length: 53/97/136) INFO: Center of mass of start points: (78+/-8, 100+/-9, 67+/-45) INFO: Center of mass of midpoints: (81+/-3, 100+/-6, 45+/-13) INFO: Center of mass of end points: (71+/-10, 102+/-9, 114+/-45) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 35942 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 80 102 37 78 102 41 76 106 58 65 111 82 69 103 142 INFO: Distances between consecutive points are 4 18 27 61 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.cst_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 148.611 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 299 streamlines for straying off mask INFO: Rejected 9 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 2031 total streamlines (min/mean/max length: 43/87/118) Processing pathway 3 of 18... Matching streamline ends INFO: Have 759 non-truncated streamlines (min/mean/max length: 49/95/118) INFO: Center of mass of start points: (125+/-14, 103+/-43, 48+/-14) INFO: Center of mass of midpoints: (133+/-5, 130+/-2, 43+/-5) INFO: Center of mass of end points: (120+/-14, 73+/-42, 61+/-17) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 23094 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 134 129 43 133 101 62 132 85 67 120 64 73 113 43 67 INFO: Distances between consecutive points are 34 17 25 23 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 31.32 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 163 streamlines for straying off mask INFO: Rejected 20 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1084 total streamlines (min/mean/max length: 52/93/131) Processing pathway 4 of 18... Matching streamline ends INFO: Have 446 non-truncated streamlines (min/mean/max length: 58/101/126) INFO: Center of mass of start points: (53+/-11, 123+/-36, 43+/-14) INFO: Center of mass of midpoints: (49+/-6, 133+/-3, 40+/-5) INFO: Center of mass of end points: (64+/-13, 61+/-37, 69+/-19) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 19350 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 48 147 42 48 126 50 44 98 60 56 70 73 75 41 76 INFO: Distances between consecutive points are 22 30 33 35 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels INFO: Selected control points are 51 149 44 52 140 43 46 111 52 59 56 73 66 44 82 INFO: Distances between consecutive points are 9 31 60 17 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1006/data/freesurfer/dlabel/mni/rh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Done in 49.106 sec. Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamlines from /usr/local/freesurfer5.1/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 4221 streamlines for straying off mask INFO: Rejected 2 streamlines for reversing direction INFO: Rejected 9 streamlines as length outliers INFO: Have 56 total streamlines (min/mean/max length: 1/13/33) Processing pathway 5 of 18... Matching streamline ends INFO: Have 27 non-truncated streamlines (min/mean/max length: 1/11/20) INFO: Center of mass of start points: (126+/-2, 132+/-3, 47+/-5) INFO: Center of mass of midpoints: (126+/-2, 131+/-1, 46+/-2) INFO: Center of mass of end points: (126+/-2, 130+/-3, 50+/-5) INFO: Split streamlines into 1 segments Computing path histograms INFO: Total streamline volume is 409 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 13 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 123 133 42 124 130 45 125 128 49 125 127 52 126 127 55 INFO: Distances between consecutive points are 4 5 3 3 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 130 135 45 130 132 46 129 129 46 128 127 49 128 126 55 INFO: Distances between consecutive points are 3 3 4 6 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 129 125 54 129 126 52 129 128 50 131 133 48 INFO: Distances between consecutive points are 3 2 3 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 16 voxels Selecting 5 points on center streamline INFO: Step is 3 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 127 125 56 127 125 53 128 125 49 129 127 46 130 134 42 INFO: Distances between consecutive points are 3 4 4 8 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 20 voxels Selecting 5 points on center streamline INFO: Step is 4 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 132 38 127 129 42 127 127 46 128 125 50 126 125 57 INFO: Distances between consecutive points are 5 4 5 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 12 voxels Selecting 5 points on center streamline INFO: Step is 2 voxels WARN: Defaulting to equidistant control points INFO: Selected control points are 126 127 54 126 126 52 125 126 50 123 127 48 121 130 43 INFO: Distances between consecutive points are 2 2 3 6 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 1 voxels WARN: Turning off FA check for center streamline INFO: Step is 1 voxels WARN: Turning off deviation check for center streamline INFO: Step is 1 voxels WARN: Turning off overlap check for center streamline INFO: Step is 1 voxels INFO: Length of center streamline is 2 voxels Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Tue May 14 11:58:15 CDT 2013