Hi Anastasia et al., <br><br>I previously had TRACULA running wonderfully on a test dataset. I was tasked with writing an in-house step-by-step manual for dummies. Since then, a colleague has followed my manual with a new dataset and had problems. After trying to determine whether it was her install or something about her data and failing to find anything, I returned to re-run the subject I had already successfully processed. Nothing has changed in my install (TRAC-all version etc) ODDLY, this re-run is suffering from the same problem as my colleague.<br>
<br>We ran trac-all -prep -dmrirc and it exited without any errors. However, there seem to be some files missing from the output:<br><br>

<p class="MsoPlainText">control.dat</p>

<p class="MsoPlainText"></p>

<p class="MsoPlainText">data.nii.gz</p>

<p class="MsoPlainText">nodif_brain_mask.nii.gz</p>

<br><br>Bedpostx will not run due to the <b>data</b> file being missing and I&#39;m sure the other missing files will cause problems.<br><br>What is going on?<br><br>I knew to look for these files as at some point I found the following list for the \dmri\. I can not re-find a post with this list so I&#39;m sorry if it related to a solution to our current problem.<br>
<br>Please help<br><br>Richard<br><br>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">brain_anat_mni.nii.gz<span style>  
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_L2.nii.gz<span style> 
</span>dwi_orig_flip.nii.gz</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">brain_anat.nii.gz<span style>      
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_L3.nii.gz<span style> 
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dwi_orig.mghdti.bvals</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">brain_anat_orig.nii.gz<span style> 
</span>dtifit_MD.nii.gz<span style>  </span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dwi_orig.mghdti.bvecs</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">bvals<span style>                  
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_MO.nii.gz<span style> 
</span>dwi_orig.nii.gz</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">bvecs<span style>                  
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_S0.nii.gz<span style> 
</span>dwi_snr.txt</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">bvecs.norot<span style>            
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_V1.nii.gz<span style> 
</span>lowb_brain.nii.gz</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">control.dat<span style>            
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_V2.nii.gz<span style> 
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">lowb.nii.gz</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">data.nii.gz<span style>            
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_V3.nii.gz<span style> 
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">mni</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_FA.nii.gz<span style>       
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dwi.ecclog<span style>       
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">nodif_brain_mask.nii.gz</span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dtifit_L1.nii.gz<span style>       
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB">dwi.nii.gz<span style>      
</span></span></p>

<p class="MsoNormal" style="margin-bottom:0in;margin-bottom:.0001pt;line-height:normal"><span style="font-size:8.0pt" lang="EN-GB"><span style> </span>xfms</span></p>

<br>