Try removing -ba_labels (it will do that with -all anyway)

On 9/29/15 9:02 PM, 葉丁瑞 wrote:

Dear All,

I ran the following script:

recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels

and got the error below at the end. Could anybody please let me know how to fix it.
---
SUBJECTS_DIR    /Volumes/yang/S002_AD1118_20090116

FREESURFER_HOME /Applications/freesurfer

Loading source label.

No such file or directory

ERROR reading /Volumes/yang/S002_AD1118_20090116/fsaverage/label/lh.BA1.label

Darwin MRI2deiMac.local 13.4.0 Darwin Kernel Version 13.4.0: Wed Mar 18 16:20:14 PDT 2015; root:xnu-2422.115.14~1/RELEASE_X86_64 x86_64



recon-all -s S002 exited with ERRORS at Sat Sep 26 21:57:00 CST 2015


For more details, see the log file /Volumes/yang/S002_AD1118_20090116/S002/scripts/recon-all.log

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
---

I follow the below step at freesurfer message board 

cd  /Volume/yang

ln -s /Applications/freesurfer/subjects/fsaverage

recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels

but the error is not resoled. please see attached file below

my environment for Freesurfer/FS-FAST 
-------- freesurfer-Darwin-lion-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer
FSFAST_HOME       /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR      /Applications/freesurfer/subjects
MNI_DIR           /Applications/freesurfer/mni
FSL_DIR           /usr/local/fsl

Thank you,

TING-JUI YEH

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