Reposting this message as I do not see this in the FS archives. Any help would be appreciated.
Thanks,
Dr. Rakshathi Basavaraju (M.D. Psychiatry)
Assistant Professor (Department of Health Research-sponsored return-home research fellowship)
Principal Investigator - OPCINSS
Department of Psychiatry
National Institute of Mental Health and Neurosciences (NIMHANS)
Bengaluru, Karnataka, India-560029
Phone: +91-9480829898/+91-80-26972156/+91-80-26995320
---------- Forwarded message ---------
From: Rakshathi Basavaraju <rakshathi.b@gmail.com>
Date: Fri, Jan 27, 2023 at 3:46 PM
Subject: A doubt regarding autorecon after watershedding
To: <Freesurfer@nmr.mgh.harvard.edu>
From: Rakshathi Basavaraju <rakshathi.b@gmail.com>
Date: Fri, Jan 27, 2023 at 3:46 PM
Subject: A doubt regarding autorecon after watershedding
To: <Freesurfer@nmr.mgh.harvard.edu>
Dear FS,
I intend to examine cortical thickness correlates of negative symptoms in my schizophrenia sample. I ran recon-all and corrected a few brainmasks which were excessively stripped by watershedding with different h values (ran autorecon-pial for those watershedded). I am attaching a few screenshots of scans where the segmentation is erroneous and the aseg omits the right temporal and parietal or cerebellar regions. How do I set this right?
Dr. Rakshathi Basavaraju (M.D. Psychiatry)
Assistant Professor (Department of Health Research-sponsored return-home research fellowship)
Principal Investigator - OPCINSS
Department of Psychiatry
National Institute of Mental Health and Neurosciences (NIMHANS)
Bengaluru, Karnataka, India-560029
Phone: +91-9480829898/+91-80-26972156/+91-80-26995320