There's a line break after:
set dcmlist = (APOE.124.dwi.nii.gz APOE.158.dwi.nii.gz APOE.215.dwi.nii.gz APOE.269.dwi.nii.gz
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Daniel Callow <ddcc2442@gmail.com>
Sent: Monday, October 7, 2019 10:21 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] TRACULA - input Nifti instead of DICOM?
 

        External Email - Use Caution        

Hello Anastasia,

I am following up on my previous email about running TRACULA on my subject's NIFTI DWI images instead of dicoms and am running into the following issues which I have had before when trying to use NIFTI files instead of dicoms.

Too many ('s.

ERROR: must specify as many DWI dicoms as subjects



The number of subjects and dwi's listed should all be the same? I have included the dmrirc file to this email as a reference. Any ideas what could be leading to this issue? Is it the way I am naming or referencing the DWI images?


Best,

Daniel Callow
PhD Student, Neuroscience and Cognitive Science
Exercise for Brain Health Lab
University of Maryland, College Park
443-254-6298