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servux:~/freesurfer/subjects/ghca> recon-all -i C0001 -s test

INFO: SUBJECTS_DIR is /home/philfeu/freesurfer/subjects

Actual FREESURFER_HOME /home/philfeu/freesurfer

Linux servux 2.6.24-19-generic #1 SMP Wed Aug 20 17:53:40 UTC 2008 x86_64 GNU/Linux

/home/philfeu/freesurfer/subjects/test

mri_convert /home/philfeu/freesurfer/subjects/ghca/C0001 /home/philfeu/freesurfer/subjects/test/mri/orig/001.mgz

$Id: mri_convert.c,v 1.146.2.2 2008/03/02 02:53:20 nicks Exp $

reading from /home/philfeu/freesurfer/subjects/ghca/C0001...

Getting Series No

INFO: Found 250 files in /home/philfeu/freesurfer/subjects/ghca

INFO: Scanning for Series Number 2

Scanning Directory

INFO: found 128 files in series

INFO: loading series header info.

RunNo = 1

WARNING: Run 1 appears to be truncated

Files Found: 128, Files Expected (lRep+1): 1

FileName /home/philfeu/freesurfer/subjects/ghca/C0001

Identification

NumarisVer syngo MR A30 4VA30A

ScannerModel Symphony

PatientName TEST

Date and time

StudyDate 20080828

StudyTime 165725.921000

SeriesTime 171106.578000

AcqTime 170220.252481

Acquisition parameters

PulseSeq *tfl3d1_ns

Protocol MPRAGE VOLUM 8MIN

PhEncDir ROW

EchoNo 0

FlipAngle 7

EchoTime 3.48

InversionTime 1000

RepetitionTime 2730

PhEncFOV 256

ReadoutFOV 256

Image information

RunNo 1

SeriesNo 2

ImageNo 1

NImageRows 192

NImageCols 192

NFrames 128

SliceArraylSize 1

IsMosaic 1

ImgPos 85.7703 164.3475 80.1092

VolRes 1.2800 1.2800 1.3300

VolDim 200 200 1

Vc 0.1097 -0.9940 -0.0000

Vr -0.1091 -0.0120 -0.9940

Vs -0.9880 -0.1091 0.1097

VolCenter 0.0000 0.0000 0.0000

TransferSyntaxUID 1.2.840.10008.1.2.1

INFO: sorting.

INFO: (200 200 1), nframes = 128, ismosaic=1

Numaris Version: syngo MR A30 4VA30A Maj = 4, Min=3, MinMin = 0

Repetition Time = 2730, TR = 2730 ms

AutoAlign matrix detected

AutoAlign Matrix ---------------------

1.000 0.000 0.000 0.000;

0.000 1.000 0.000 0.000;

0.000 0.000 1.000 0.000;

0.000 0.000 0.000 1.000;