Job was submitted from host by user in cluster . Job was executed on host(s) <4*n064>, in queue , as user in cluster . was used as the home directory. was used as the working directory. Started at Tue Apr 9 21:41:51 2013 Results reported at Tue Apr 9 23:13:56 2013 Your job looked like: ------------------------------------------------------------ # LSBATCH: User input trac-all -prep -c dmrirc_single_subject_igis069b ------------------------------------------------------------ Successfully completed. LSF could not use a single processor to bind all jobs when the binding option is set to PACK.LSF tried to use as few processors as possible when binding job . Resource usage summary: CPU time : 5422.84 sec. Max Memory : 4828 MB Max Swap : 5511 MB Max Processes : 10 Max Threads : 11 The output (if any) follows: bla INFO: SUBJECTS_DIR is /fastfs/igis/MRI_fs_rec_t1 INFO: Diffusion root is /fastfs/igis/MRI_fs_rec_dti Actual FREESURFER_HOME /sw/global/applications/freesurfer/5.2.0/x86_64 INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.2.0 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /sw/global/applications/freesurfer/5.2.0/x86_64 Previous: /sw/global/applications/freesurfer/5.1.0/x86_64 trac-preproc -c /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/scripts/dmrirc.local -log /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/scripts/trac-all.log -cmd /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/scripts/trac-all.cmd #------------------------------------- /sw/global/applications/freesurfer/5.2.0/x86_64/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Apr 9 21:41:56 CEST 2013 mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/orig/20120522_072644aaDTIimagen60364-10-069-1T1.nii /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/orig/20120522_072644aaDTIimagen60364-10-069-1T1.nii /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/orig/20120522_072644aaDTIimagen60364-10-069-1T1.nii... TR=15000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.990385, -0.115328, 0.0763987) j_ras = (-0.103749, 0.984522, 0.141251) k_ras = (0.0915064, -0.131967, 0.987021) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.nii.gz... cp /fastfs/igis/MRI_fs_rec_dti/bvalvec/bvecs.txt /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.mghdti.bvecs cp /fastfs/igis/MRI_fs_rec_dti/bvalvec/bvals.txt /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.mghdti.bvals flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -13.806 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.nii.gz x y z /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.nii.gz INFO: found /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.mghdti.bvecs /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs mv -f /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.mghdti.bvals /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvals eddy_correct /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_orig_flip.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz 0 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0000 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0001 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0002 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0003 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0004 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0005 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0006 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0007 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0008 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0009 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0010 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0011 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0012 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0013 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0014 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0015 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0016 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0017 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0018 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0019 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0020 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0021 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0022 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0023 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0024 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0025 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0026 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0027 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0028 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0029 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0030 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0031 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0032 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0033 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0034 processing /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_tmp0035 mv -f /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs.norot xfmrot /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.ecclog /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs.norot /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs ln -sf /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/data.nii.gz fslroi /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz 0 4 fslmaths /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -Tmean /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz bet /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb_brain_mask.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff #------------------------------------- #@# Intra-subject registration Tue Apr 9 21:50:30 CEST 2013 mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brain.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brain.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brain.mgz... TR=1900.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 8.9407e-08, 0) j_ras = (0, 0, -1) k_ras = (5.96046e-08, 1, 0) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz... flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz tkregister2 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz --targ /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2anat.mat --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2anatorig.dat tkregister_tcl /sw/global/applications/freesurfer/5.2.0/x86_64/tktools/tkregister2.tcl target volume /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz movable volume /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz reg file /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 -0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2anatorig.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2anat.mat Log file is /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat.log Tue Apr 9 21:50:34 CEST 2013 setenv SUBJECTS_DIR /fastfs/igis/MRI_fs_rec_t1 cd /fastfs/igis/MRI_fs_rec_dti/scripts /sw/global/applications/freesurfer/5.2.0/x86_64/bin/bbregister --s 64-10-069-1_T1 --init-fsl --dti --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat --fslmat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ Linux n064 2.6.32.49-0.3-default #1 SMP 2011-12-02 11:28:04 +0100 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /sw/global/applications/freesurfer/5.2.0/x86_64 mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.990385, -0.115328, 0.0763987) j_ras = (-0.103749, 0.984522, 0.141251) k_ras = (0.0915064, -0.131967, 0.987021) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii... fslregister --s 64-10-069-1_T1 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister --dof 6 --fsvol brainmask Log file is /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat.fslregister.log Tue Apr 9 21:50:41 CEST 2013 --s 64-10-069-1_T1 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister --dof 6 --fsvol brainmask $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ n064 Linux n064 2.6.32.49-0.3-default #1 SMP 2011-12-02 11:28:04 +0100 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /fastfs/igis/MRI_fs_rec_dti/scripts mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/refvol.fslregister.nii mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz... TR=1900.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 8.9407e-08, 0) j_ras = (0, 0, -1) k_ras = (5.96046e-08, 1, 0) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/refvol.fslregister.nii... -------------------------------------- /fastfs/igis/MRI_fs_rec_dti/scripts mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii --frame 0 mri_convert /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.990385, -0.115328, 0.0763987) j_ras = (-0.103749, 0.984522, 0.141251) k_ras = (0.0915064, -0.131967, 0.987021) keeping frame 0 writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii... Mov determinant is -13.806 /fastfs/igis/MRI_fs_rec_dti/scripts tkregister2_cmdl --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/reg0.53631.dat --regheader --fslregout /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat.fsl.mat0 --s 64-10-069-1_T1 --noedit tkregister_tcl /sw/global/applications/freesurfer/5.2.0/x86_64/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii reg file /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/reg0.53631.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.398 0.000 0.000 153.500; 0.000 0.000 2.400 -72.000; 0.000 -2.398 0.000 153.500; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.990 0.115 -0.076 3.190; 0.092 -0.132 0.987 -46.818; 0.104 -0.985 -0.141 -8.432; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.990 0.115 -0.076 3.190; 0.092 -0.132 0.987 -46.818; 0.104 -0.985 -0.141 -8.432; 0.000 0.000 0.000 1.000; Determinant 1 subject = 64-10-069-1_T1 RegMat --------------------------- 0.990 0.115 -0.076 3.190; 0.092 -0.132 0.987 -46.818; 0.104 -0.985 -0.141 -8.432; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -13.806, ref det = -1 Tue Apr 9 21:50:55 CEST 2013 /fastfs/igis/MRI_fs_rec_dti/scripts flirt.fsl -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/refvol.fslregister.nii -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/fslmat0.trans.mat -schedule /sw/global/libraries/fsl/5.0.1/x86_64/etc/flirtsch/xyztrans.sch -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat.fsl.mat0 Tue Apr 9 21:51:12 CEST 2013 /fastfs/igis/MRI_fs_rec_dti/scripts flirt.fsl -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/refvol.fslregister.nii -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat.fsl.mat -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/fslregister/fslmat0.trans.mat -schedule /sw/global/applications/freesurfer/5.2.0/x86_64/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s 64-10-069-1_T1 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --fslreg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat.fsl.mat --noedit tkregister_tcl /sw/global/applications/freesurfer/5.2.0/x86_64/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.990 0.103 -0.093 -37.039; -0.078 -0.142 -0.987 190.670; -0.115 0.985 -0.132 -8.629; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii reg file /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii Tmov: -------------------- -2.398 0.000 0.000 153.500; 0.000 0.000 2.400 -72.000; 0.000 -2.398 0.000 153.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -13.806, ref det = -1 ---- Input registration matrix (computed) -------- 0.990 0.115 -0.078 0.930; 0.093 -0.132 0.987 -43.593; 0.103 -0.985 -0.142 -6.963; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.990 0.115 -0.078 0.930; 0.093 -0.132 0.987 -43.593; 0.103 -0.985 -0.142 -6.963; 0.000 0.000 0.000 1.000; Determinant 1 subject = 64-10-069-1_T1 RegMat --------------------------- 0.990 0.115 -0.078 0.930; 0.093 -0.132 0.987 -43.593; 0.103 -0.985 -0.142 -6.963; 0.000 0.000 0.000 1.000; (standard_in) 1: illegal character: _ (standard_in) 1: illegal character: T (standard_in) 1: syntax error Started at Tue Apr 9 21:50:41 CEST 2013 Ended at Tue Apr 9 21:51:42 CEST 2013 fslregister Done To check results, run: tkregister2 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --surf orig mri_segreg --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --init-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --out-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /fastfs/igis/MRI_fs_rec_t1 cd /fastfs/igis/MRI_fs_rec_dti/scripts mri_segreg --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --init-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat --out-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname n064 machine x86_64 user pfuhl movvol /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii regfile /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.init.dat subject 64-10-069-1_T1 dof 6 outregfile /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1366059981 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.990 0.115 -0.078 0.930; 0.093 -0.132 0.987 -43.593; 0.103 -0.985 -0.142 -6.963; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 0.987213 1 -25.0 -25.0 25.0 1.008305 2 -25.0 25.0 -25.0 0.989295 3 -25.0 25.0 25.0 0.987369 4 25.0 -25.0 -25.0 1.025131 5 25.0 -25.0 25.0 1.040959 6 25.0 25.0 -25.0 1.086545 7 25.0 25.0 25.0 1.043273 REL: 8 0.687695 8.168090 1.021011 rel = 0.673543 Initial costs ---------------- Number of surface hits 2496 WM Intensity 406.4563 +/- 183.3851 Ctx Intensity 484.3636 +/- 220.5539 Pct Contrast 15.6550 +/- 40.8450 Cost 0.6877 RelCost 0.6735 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9632 0.9632 0.0 4 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.0000 0.9475 0.9475 0.0 11 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.9436 0.9436 0.0 19 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.0000 0.9283 0.9283 0.0 39 -4.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.9210 0.9210 0.0 42 -4.0000 -4.0000 0.0000 0.0000 4.0000 -4.0000 0.9083 0.9083 0.0 48 -4.0000 -4.0000 0.0000 4.0000 0.0000 -4.0000 0.8741 0.8741 0.0 126 -4.0000 0.0000 0.0000 4.0000 -4.0000 -4.0000 0.8694 0.8694 0.0 127 -4.0000 0.0000 0.0000 4.0000 -4.0000 0.0000 0.8274 0.8274 0.0 160 -4.0000 0.0000 4.0000 4.0000 4.0000 0.0000 0.8151 0.8151 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.8054 0.8054 0.0 292 0.0000 -4.0000 0.0000 4.0000 0.0000 0.0000 0.7364 0.7364 0.0 301 0.0000 -4.0000 4.0000 -4.0000 0.0000 0.0000 0.7012 0.7012 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.6877 0.6877 0.0 370 0.0000 0.0000 0.0000 4.0000 -4.0000 0.0000 0.6798 0.6798 0.0 373 0.0000 0.0000 0.0000 4.0000 0.0000 0.0000 0.5284 0.5284 0.0 Brute Force -------------------------- Min cost was 0.528406 Number of iterations 729 Search time 2.998000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 4.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 4 4 0 5 0 7 0.046 0.000 0.000 4.000 0.000 0.000 0.5277822098 8 0.095 0.000 0.000 4.000 0.000 0.000 0.5273623343 10 0.115 0.000 0.000 4.000 0.000 0.000 0.5267423328 12 0.129 0.000 0.000 4.000 0.000 0.000 0.5266664660 13 0.128 0.000 0.000 4.000 0.000 0.000 0.5266638101 14 0.127 0.000 0.000 4.000 0.000 0.000 0.5266621248 26 0.127 -0.029 0.000 4.000 0.000 0.000 0.5265141473 30 0.127 -0.029 1.000 4.000 0.000 0.000 0.5055094215 33 0.127 -0.029 1.618 4.000 0.000 0.000 0.4971329721 36 0.127 -0.029 1.759 4.000 0.000 0.000 0.4969911229 37 0.127 -0.029 1.851 4.000 0.000 0.000 0.4969496292 39 0.127 -0.029 1.816 4.000 0.000 0.000 0.4967521335 41 0.127 -0.029 1.823 4.000 0.000 0.000 0.4967470336 42 0.127 -0.029 1.821 4.000 0.000 0.000 0.4967445070 47 0.127 -0.029 1.821 2.382 0.000 0.000 0.4478756382 56 0.127 -0.029 1.821 2.381 0.000 0.000 0.4478747773 67 0.127 -0.029 1.821 2.381 -0.044 0.000 0.4477336483 68 0.127 -0.029 1.821 2.381 -0.034 0.000 0.4476387653 69 0.127 -0.029 1.821 2.381 -0.026 0.000 0.4476134679 73 0.127 -0.029 1.821 2.381 -0.026 1.000 0.4195008540 79 0.127 -0.029 1.821 2.381 -0.026 0.888 0.4185598050 80 0.127 -0.029 1.821 2.381 -0.026 0.785 0.4182922965 81 0.127 -0.029 1.821 2.381 -0.026 0.788 0.4182297666 82 0.127 -0.029 1.821 2.381 -0.026 0.831 0.4180833756 84 0.127 -0.029 1.821 2.381 -0.026 0.814 0.4179988573 86 0.127 -0.029 1.821 2.381 -0.026 0.812 0.4179976289 96 0.157 -0.029 1.821 2.381 -0.026 0.812 0.4175099177 97 0.201 -0.029 1.821 2.381 -0.026 0.812 0.4164584144 100 0.210 -0.029 1.821 2.381 -0.026 0.812 0.4162508443 101 0.218 -0.029 1.821 2.381 -0.026 0.812 0.4161877328 102 0.217 -0.029 1.821 2.381 -0.026 0.812 0.4161857428 112 0.217 -0.112 1.821 2.381 -0.026 0.812 0.4153865998 113 0.217 -0.105 1.821 2.381 -0.026 0.812 0.4153456153 114 0.217 -0.094 1.821 2.381 -0.026 0.812 0.4153142380 116 0.217 -0.088 1.821 2.381 -0.026 0.812 0.4153107107 117 0.217 -0.089 1.821 2.381 -0.026 0.812 0.4153105528 124 0.217 -0.089 2.202 2.381 -0.026 0.812 0.4094508504 128 0.217 -0.089 2.206 2.381 -0.026 0.812 0.4094498801 129 0.217 -0.089 2.205 2.381 -0.026 0.812 0.4094493655 137 0.217 -0.089 2.205 2.224 -0.026 0.812 0.4066098251 139 0.217 -0.089 2.205 2.237 -0.026 0.812 0.4065089691 141 0.217 -0.089 2.205 2.249 -0.026 0.812 0.4064672215 142 0.217 -0.089 2.205 2.254 -0.026 0.812 0.4064655462 143 0.217 -0.089 2.205 2.252 -0.026 0.812 0.4064643173 152 0.217 -0.089 2.205 2.252 -0.054 0.812 0.4063145046 153 0.217 -0.089 2.205 2.252 -0.055 0.812 0.4063127635 155 0.217 -0.089 2.205 2.252 -0.058 0.812 0.4063080449 156 0.217 -0.089 2.205 2.252 -0.059 0.812 0.4063055808 157 0.217 -0.089 2.205 2.252 -0.060 0.812 0.4063047337 164 0.217 -0.089 2.205 2.252 -0.060 0.918 0.4046512337 165 0.217 -0.089 2.205 2.252 -0.060 0.946 0.4043751604 168 0.217 -0.089 2.205 2.252 -0.060 0.947 0.4043750850 181 0.220 -0.089 2.205 2.252 -0.060 0.947 0.4043636820 183 0.223 -0.089 2.205 2.252 -0.060 0.947 0.4043619261 185 0.222 -0.089 2.205 2.252 -0.060 0.947 0.4043617024 192 0.222 -0.221 2.205 2.252 -0.060 0.947 0.4039679653 195 0.222 -0.292 2.205 2.252 -0.060 0.947 0.4031216820 198 0.222 -0.286 2.205 2.252 -0.060 0.947 0.4030985020 199 0.222 -0.283 2.205 2.252 -0.060 0.947 0.4030953519 200 0.222 -0.282 2.205 2.252 -0.060 0.947 0.4030952781 208 0.222 -0.282 2.224 2.252 -0.060 0.947 0.4029291986 209 0.222 -0.282 2.275 2.252 -0.060 0.947 0.4028848838 211 0.222 -0.282 2.254 2.252 -0.060 0.947 0.4028030378 213 0.222 -0.282 2.257 2.252 -0.060 0.947 0.4027989959 215 0.222 -0.282 2.259 2.252 -0.060 0.947 0.4027985319 223 0.222 -0.282 2.259 2.082 -0.060 0.947 0.4021641843 227 0.222 -0.282 2.259 2.060 -0.060 0.947 0.4018172321 229 0.222 -0.282 2.259 2.061 -0.060 0.947 0.4018142379 232 0.222 -0.282 2.259 2.063 -0.060 0.947 0.4018101514 243 0.222 -0.282 2.259 2.063 -0.056 0.947 0.4017841350 254 0.222 -0.282 2.259 2.063 -0.056 0.980 0.4015784608 256 0.222 -0.282 2.259 2.063 -0.056 0.977 0.4015756806 266 0.249 -0.282 2.259 2.063 -0.056 0.977 0.4010695451 269 0.250 -0.282 2.259 2.063 -0.056 0.977 0.4010688931 278 0.250 -0.287 2.259 2.063 -0.056 0.977 0.4010444448 287 0.250 -0.287 2.290 2.063 -0.056 0.977 0.4007350232 288 0.250 -0.287 2.345 2.063 -0.056 0.977 0.4006016144 289 0.250 -0.287 2.332 2.063 -0.056 0.977 0.4005127780 290 0.250 -0.287 2.323 2.063 -0.056 0.977 0.4004994174 291 0.250 -0.287 2.324 2.063 -0.056 0.977 0.4004989147 302 0.250 -0.287 2.324 2.054 -0.056 0.977 0.4004876972 313 0.250 -0.287 2.324 2.054 -0.046 0.977 0.4004077557 314 0.250 -0.287 2.324 2.054 -0.041 0.977 0.4003946724 317 0.250 -0.287 2.324 2.054 -0.040 0.977 0.4003938154 318 0.250 -0.287 2.324 2.054 -0.039 0.977 0.4003932304 336 0.249 -0.287 2.324 2.054 -0.039 0.977 0.4003832033 339 0.244 -0.287 2.324 2.054 -0.039 0.977 0.4003686296 350 0.244 -0.297 2.324 2.054 -0.039 0.977 0.4002549525 351 0.244 -0.301 2.324 2.054 -0.039 0.977 0.4002345104 352 0.244 -0.303 2.324 2.054 -0.039 0.977 0.4002339699 363 0.244 -0.303 2.333 2.054 -0.039 0.977 0.4001990996 372 0.244 -0.303 2.333 2.041 -0.039 0.977 0.4001841267 374 0.244 -0.303 2.333 2.045 -0.039 0.977 0.4001794150 385 0.244 -0.303 2.333 2.045 -0.038 0.977 0.4001684695 386 0.244 -0.303 2.333 2.045 -0.032 0.977 0.4001552879 388 0.244 -0.303 2.333 2.045 -0.033 0.977 0.4001547627 398 0.244 -0.303 2.333 2.045 -0.033 0.988 0.4001320358 399 0.244 -0.303 2.333 2.045 -0.033 0.987 0.4001316691 400 0.244 -0.303 2.333 2.045 -0.033 0.986 0.4001316188 410 0.241 -0.303 2.333 2.045 -0.033 0.986 0.4001152997 413 0.237 -0.303 2.333 2.045 -0.033 0.986 0.4001051588 425 0.237 -0.304 2.333 2.045 -0.033 0.986 0.4001046700 437 0.237 -0.304 2.340 2.045 -0.033 0.986 0.4000945726 438 0.237 -0.304 2.338 2.045 -0.033 0.986 0.4000938523 446 0.237 -0.304 2.338 2.037 -0.033 0.986 0.4000841572 448 0.237 -0.304 2.338 2.039 -0.033 0.986 0.4000833165 450 0.237 -0.304 2.338 2.038 -0.033 0.986 0.4000832640 460 0.237 -0.304 2.338 2.038 -0.029 0.986 0.4000788066 471 0.237 -0.304 2.338 2.038 -0.029 0.996 0.4000672083 472 0.237 -0.304 2.338 2.038 -0.029 0.994 0.4000650132 475 0.231 -0.305 2.344 2.031 -0.026 1.002 0.4000227433 478 0.221 -0.307 2.352 2.020 -0.020 1.014 0.4000101473 479 0.224 -0.306 2.349 2.024 -0.022 1.010 0.4000036518 483 0.225 -0.306 2.349 2.025 -0.022 1.009 0.4000032627 486 0.225 -0.306 2.349 2.025 -0.022 1.009 0.4000028976 488 0.225 -0.306 2.349 2.025 -0.022 1.009 0.4000028118 500 0.225 -0.306 2.349 2.025 -0.022 1.007 0.4000024578 502 0.225 -0.306 2.349 2.025 -0.022 1.008 0.4000020510 512 0.225 -0.304 2.349 2.025 -0.022 1.008 0.3999947024 523 0.225 -0.304 2.376 2.025 -0.022 1.008 0.3999301546 524 0.225 -0.304 2.379 2.025 -0.022 1.008 0.3999267227 526 0.225 -0.304 2.384 2.025 -0.022 1.008 0.3999251237 536 0.225 -0.304 2.384 2.010 -0.022 1.008 0.3999093938 538 0.225 -0.304 2.384 2.015 -0.022 1.008 0.3999040070 550 0.225 -0.304 2.384 2.015 -0.025 1.008 0.3999010700 551 0.225 -0.304 2.384 2.015 -0.026 1.008 0.3999005871 554 0.218 -0.305 2.389 2.008 -0.023 1.015 0.3998119460 555 0.208 -0.306 2.398 1.997 -0.017 1.028 0.3997548315 562 0.208 -0.306 2.397 1.997 -0.017 1.028 0.3997545997 567 0.179 -0.309 2.456 1.955 -0.005 1.061 0.3991345747 572 0.161 -0.310 2.493 1.930 0.002 1.082 0.3985771982 575 0.160 -0.310 2.495 1.928 0.003 1.084 0.3985723808 577 0.160 -0.310 2.495 1.928 0.003 1.084 0.3985723041 590 0.160 -0.310 2.495 1.928 0.003 1.041 0.3983781552 591 0.160 -0.310 2.495 1.928 0.003 1.047 0.3983680078 592 0.160 -0.310 2.495 1.928 0.003 1.049 0.3983677184 593 0.160 -0.310 2.495 1.928 0.003 1.050 0.3983673448 606 0.160 -0.300 2.495 1.928 0.003 1.050 0.3982929495 607 0.160 -0.301 2.495 1.928 0.003 1.050 0.3982916934 617 0.160 -0.301 2.501 1.928 0.003 1.050 0.3981073419 618 0.160 -0.301 2.530 1.928 0.003 1.050 0.3979040261 620 0.160 -0.301 2.521 1.928 0.003 1.050 0.3978537872 621 0.160 -0.301 2.520 1.928 0.003 1.050 0.3978537299 631 0.160 -0.301 2.520 1.923 0.003 1.050 0.3978442859 642 0.160 -0.301 2.520 1.923 -0.020 1.050 0.3977966671 644 0.160 -0.301 2.520 1.923 -0.011 1.050 0.3977465041 646 0.160 -0.301 2.520 1.923 -0.012 1.050 0.3977463370 655 0.166 -0.301 2.507 1.932 -0.015 1.042 0.3976402012 656 0.166 -0.301 2.507 1.932 -0.015 1.042 0.3976396994 658 0.166 -0.301 2.508 1.932 -0.014 1.043 0.3976390378 659 0.166 -0.301 2.508 1.932 -0.015 1.043 0.3976388146 660 0.166 -0.301 2.508 1.932 -0.015 1.043 0.3976383411 671 0.166 -0.301 2.508 1.932 -0.015 1.034 0.3976265367 683 0.166 -0.299 2.508 1.932 -0.015 1.034 0.3976241535 695 0.166 -0.299 2.534 1.932 -0.015 1.034 0.3976131482 696 0.166 -0.299 2.521 1.932 -0.015 1.034 0.3975074184 705 0.166 -0.299 2.521 1.914 -0.015 1.034 0.3975010137 706 0.166 -0.299 2.521 1.921 -0.015 1.034 0.3974770742 707 0.166 -0.299 2.521 1.923 -0.015 1.034 0.3974753187 719 0.166 -0.299 2.521 1.923 -0.016 1.034 0.3974751546 728 0.171 -0.299 2.512 1.929 -0.018 1.028 0.3974179977 729 0.171 -0.299 2.512 1.929 -0.018 1.028 0.3974178907 730 0.171 -0.299 2.512 1.929 -0.017 1.029 0.3974178417 731 0.171 -0.299 2.512 1.929 -0.017 1.029 0.3974173205 734 0.170 -0.299 2.513 1.929 -0.017 1.029 0.3974172044 737 0.170 -0.299 2.513 1.929 -0.017 1.029 0.3974169367 739 0.175 -0.296 2.518 1.926 -0.020 1.015 0.3972930028 744 0.177 -0.295 2.521 1.924 -0.022 1.007 0.3972687618 746 0.177 -0.295 2.521 1.923 -0.022 1.006 0.3972685344 747 0.178 -0.295 2.521 1.923 -0.022 1.006 0.3972683813 749 0.178 -0.295 2.521 1.923 -0.022 1.005 0.3972682538 763 0.178 -0.295 2.521 1.923 -0.022 1.040 0.3972004732 764 0.178 -0.295 2.521 1.923 -0.022 1.028 0.3971696966 776 0.178 -0.301 2.521 1.923 -0.022 1.027 0.3971395264 785 0.180 -0.301 2.516 1.927 -0.023 1.024 0.3971289941 786 0.180 -0.301 2.517 1.926 -0.023 1.025 0.3971282771 787 0.180 -0.301 2.517 1.926 -0.023 1.025 0.3971281228 789 0.180 -0.301 2.517 1.926 -0.023 1.025 0.3971277992 799 0.180 -0.301 2.517 1.925 -0.023 1.025 0.3971275980 810 0.180 -0.301 2.517 1.925 -0.019 1.025 0.3971189051 811 0.180 -0.301 2.517 1.925 -0.018 1.025 0.3971188004 814 0.184 -0.299 2.522 1.922 -0.021 1.011 0.3970425564 819 0.185 -0.298 2.523 1.921 -0.022 1.008 0.3970407717 820 0.185 -0.298 2.522 1.921 -0.021 1.009 0.3970405321 825 0.185 -0.298 2.522 1.921 -0.022 1.008 0.3970402761 828 0.200 -0.298 2.532 1.914 -0.026 0.988 0.3970120316 837 0.185 -0.298 2.522 1.921 -0.021 1.027 0.3969694984 839 0.185 -0.298 2.522 1.921 -0.021 1.026 0.3969693609 851 0.185 -0.302 2.522 1.921 -0.021 1.026 0.3969595609 852 0.185 -0.301 2.522 1.921 -0.021 1.026 0.3969592682 860 0.187 -0.301 2.518 1.924 -0.022 1.024 0.3969507406 861 0.187 -0.301 2.519 1.924 -0.022 1.024 0.3969507259 862 0.187 -0.301 2.519 1.924 -0.022 1.024 0.3969502953 864 0.187 -0.301 2.519 1.924 -0.022 1.024 0.3969499405 888 0.191 -0.299 2.524 1.921 -0.025 1.010 0.3968918281 893 0.191 -0.299 2.524 1.921 -0.025 1.010 0.3968918061 894 0.191 -0.299 2.524 1.921 -0.025 1.010 0.3968916947 895 0.191 -0.299 2.524 1.921 -0.025 1.010 0.3968915499 897 0.191 -0.299 2.524 1.921 -0.025 1.010 0.3968915267 900 0.197 -0.300 2.525 1.920 -0.029 1.011 0.3967680711 903 0.207 -0.301 2.527 1.920 -0.034 1.013 0.3966105936 904 0.233 -0.304 2.531 1.918 -0.049 1.019 0.3963937554 905 0.241 -0.305 2.533 1.917 -0.054 1.021 0.3963622275 906 0.249 -0.306 2.534 1.916 -0.058 1.022 0.3963574484 907 0.247 -0.305 2.534 1.917 -0.057 1.022 0.3963566932 910 0.248 -0.305 2.534 1.917 -0.058 1.022 0.3963565878 915 0.248 -0.305 2.534 1.917 -0.058 1.022 0.3963563407 920 0.248 -0.305 2.534 1.917 -0.058 1.022 0.3963562222 926 0.250 -0.305 2.536 1.915 -0.059 1.017 0.3963477498 927 0.249 -0.305 2.536 1.915 -0.059 1.017 0.3963476562 928 0.249 -0.305 2.536 1.915 -0.059 1.017 0.3963476173 931 0.249 -0.305 2.536 1.916 -0.059 1.018 0.3963472157 947 0.249 -0.308 2.536 1.916 -0.059 1.018 0.3963453790 956 0.245 -0.308 2.545 1.909 -0.057 1.023 0.3962910004 957 0.245 -0.308 2.545 1.909 -0.057 1.023 0.3962904833 970 0.245 -0.308 2.545 1.917 -0.057 1.023 0.3962516920 974 0.245 -0.308 2.545 1.924 -0.057 1.023 0.3962374454 975 0.245 -0.308 2.545 1.925 -0.057 1.023 0.3962362850 977 0.245 -0.308 2.545 1.926 -0.057 1.023 0.3962360070 978 0.245 -0.308 2.545 1.927 -0.057 1.023 0.3962354915 988 0.245 -0.308 2.545 1.927 -0.071 1.023 0.3962326615 990 0.245 -0.308 2.545 1.927 -0.064 1.023 0.3962145733 997 0.241 -0.308 2.544 1.927 -0.062 1.022 0.3962100832 999 0.241 -0.308 2.544 1.927 -0.062 1.022 0.3962099454 1003 0.241 -0.308 2.544 1.927 -0.062 1.022 0.3962098676 1006 0.241 -0.308 2.544 1.927 -0.062 1.022 0.3962098019 1017 0.242 -0.307 2.545 1.927 -0.063 1.020 0.3962089348 1021 0.242 -0.307 2.545 1.927 -0.063 1.020 0.3962088300 1024 0.242 -0.307 2.545 1.927 -0.063 1.020 0.3962088250 1034 0.242 -0.302 2.545 1.927 -0.063 1.020 0.3961870659 1036 0.242 -0.301 2.545 1.927 -0.063 1.020 0.3961855246 1045 0.242 -0.300 2.544 1.927 -0.063 1.020 0.3961845719 1050 0.242 -0.300 2.544 1.928 -0.063 1.020 0.3961845702 1061 0.242 -0.300 2.544 1.930 -0.063 1.020 0.3961820098 1063 0.242 -0.300 2.544 1.931 -0.063 1.020 0.3961813528 1082 0.242 -0.300 2.544 1.931 -0.063 1.020 0.3961811592 1084 0.242 -0.300 2.544 1.931 -0.062 1.020 0.3961810244 1087 0.242 -0.300 2.544 1.931 -0.062 1.020 0.3961810004 Powell done niters = 12 Computing relative cost 0 -25.0 -25.0 -25.0 1.006256 1 -25.0 -25.0 25.0 1.018389 2 -25.0 25.0 -25.0 1.024572 3 -25.0 25.0 25.0 0.977660 4 25.0 -25.0 -25.0 1.010355 5 25.0 -25.0 25.0 0.991156 6 25.0 25.0 -25.0 1.040227 7 25.0 25.0 25.0 1.030206 REL: 8 0.396181 8.098821 1.012353 rel = 0.391347 Number of iterations 12 Min cost was 0.396181 Number of FunctionCalls 1090 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 4.543000 sec Parameters at optimum (transmm) 0.24159 -0.30042 2.54366 Parameters at optimum (rotdeg) 1.93063 -0.06245 1.01987 Final costs ---------------- Number of surface hits 2496 WM Intensity 359.6837 +/- 157.4919 Ctx Intensity 482.0620 +/- 186.8773 Pct Contrast 27.6355 +/- 37.2536 Cost 0.3962 RelCost 0.6735 Reg at min cost was 0.988 0.118 -0.096 1.952; 0.107 -0.097 0.990 -43.610; 0.108 -0.988 -0.108 -5.883; 0.000 0.000 0.000 1.000; Writing optimal reg to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat, type = 14 Original Reg 0.990 0.115 -0.078 0.930; 0.093 -0.132 0.987 -43.593; 0.103 -0.985 -0.142 -6.963; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.002 -0.003 0.018 -1.022; -0.014 -0.035 -0.003 0.018; -0.004 0.004 -0.033 -1.080; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 3.127166 Computing change in rh position Surface RMS Diff (mm) 3.064252 4.646139 mri_segreg done mri_segreg --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --init-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat --out-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.103.2.1 2011/10/07 19:14:42 greve Exp $ setenv SUBJECTS_DIR /fastfs/igis/MRI_fs_rec_t1 cd /fastfs/igis/MRI_fs_rec_dti/scripts mri_segreg --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii --init-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat --out-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname n064 machine x86_64 user pfuhl movvol /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/template.nii regfile /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/tmp.bbregister.53591/bbr.pass1.dat subject 64-10-069-1_T1 dof 6 outregfile /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1365690378 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.988 0.118 -0.096 1.952; 0.107 -0.097 0.990 -43.610; 0.108 -0.988 -0.108 -5.883; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Computing relative cost 0 -25.0 -25.0 -25.0 1.002256 1 -25.0 -25.0 25.0 1.009947 2 -25.0 25.0 -25.0 1.036532 3 -25.0 25.0 25.0 1.003930 4 25.0 -25.0 -25.0 1.043452 5 25.0 -25.0 25.0 1.027480 6 25.0 25.0 -25.0 1.019728 7 25.0 25.0 25.0 1.039364 REL: 8 0.412475 8.182688 1.022836 rel = 0.403266 Initial costs ---------------- Number of surface hits 249202 WM Intensity 358.8065 +/- 151.9189 Ctx Intensity 484.3279 +/- 185.0265 Pct Contrast 28.1255 +/- 36.9911 Cost 0.4125 RelCost 0.4033 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.4036 0.4036 0.0 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.4035 0.4035 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.4033 0.4033 0.0 6 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.4032 0.4032 0.0 27 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 -0.1000 0.4019 0.4019 0.0 30 -0.1000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.4000 0.4000 0.0 33 -0.1000 -0.1000 0.0000 -0.1000 0.1000 -0.1000 0.4000 0.4000 0.0 111 -0.1000 0.0000 0.0000 -0.1000 0.0000 -0.1000 0.3995 0.3995 0.0 124 -0.1000 0.0000 0.0000 0.0000 0.1000 0.0000 0.3992 0.3992 0.0 247 0.0000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.3991 0.3991 0.0 270 0.0000 -0.1000 0.0000 -0.1000 -0.1000 -0.1000 0.3991 0.3991 0.0 273 0.0000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.3982 0.3982 0.0 274 0.0000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.3970 0.3970 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3962 0.3962 0.0 Brute Force -------------------------- Min cost was 0.396181 Number of iterations 729 Search time 3.135000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 8 0.020 0.000 0.000 0.000 0.000 0.000 0.4124593830 10 0.014 0.000 0.000 0.000 0.000 0.000 0.4124560470 11 0.015 0.000 0.000 0.000 0.000 0.000 0.4124560415 19 0.015 -0.241 0.000 0.000 0.000 0.000 0.4086039287 20 0.015 -0.253 0.000 0.000 0.000 0.000 0.4085934679 29 0.015 -0.254 -0.305 0.000 0.000 0.000 0.4044903598 31 0.015 -0.254 -0.283 0.000 0.000 0.000 0.4044708354 33 0.015 -0.254 -0.287 0.000 0.000 0.000 0.4044701647 44 0.015 -0.254 -0.287 0.002 0.000 0.000 0.4044698304 53 0.015 -0.254 -0.287 0.002 -0.168 0.000 0.4035237751 54 0.015 -0.254 -0.287 0.002 -0.157 0.000 0.4035144107 55 0.015 -0.254 -0.287 0.002 -0.152 0.000 0.4035126897 57 0.015 -0.254 -0.287 0.002 -0.151 0.000 0.4035126382 58 0.015 -0.254 -0.287 0.002 -0.150 0.000 0.4035123716 65 0.015 -0.254 -0.287 0.002 -0.150 -0.110 0.4029622711 67 0.015 -0.254 -0.287 0.002 -0.150 -0.114 0.4029609469 68 0.015 -0.254 -0.287 0.002 -0.150 -0.115 0.4029607316 78 0.057 -0.254 -0.287 0.002 -0.150 -0.115 0.4026840312 79 0.080 -0.254 -0.287 0.002 -0.150 -0.115 0.4026350017 80 0.085 -0.254 -0.287 0.002 -0.150 -0.115 0.4026299337 81 0.092 -0.254 -0.287 0.002 -0.150 -0.115 0.4026254556 84 0.100 -0.254 -0.287 0.002 -0.150 -0.115 0.4026246939 85 0.097 -0.254 -0.287 0.002 -0.150 -0.115 0.4026239890 94 0.097 -0.297 -0.287 0.002 -0.150 -0.115 0.4025573937 95 0.097 -0.289 -0.287 0.002 -0.150 -0.115 0.4025504594 96 0.097 -0.287 -0.287 0.002 -0.150 -0.115 0.4025499073 106 0.097 -0.287 -0.325 0.002 -0.150 -0.115 0.4024268566 117 0.097 -0.287 -0.325 -0.009 -0.150 -0.115 0.4024153495 120 0.097 -0.287 -0.325 -0.010 -0.150 -0.115 0.4024151662 130 0.097 -0.287 -0.325 -0.010 -0.248 -0.115 0.4022656099 131 0.097 -0.287 -0.325 -0.010 -0.215 -0.115 0.4022605176 134 0.097 -0.287 -0.325 -0.010 -0.206 -0.115 0.4022602468 135 0.097 -0.287 -0.325 -0.010 -0.208 -0.115 0.4022598342 136 0.097 -0.287 -0.325 -0.010 -0.210 -0.115 0.4022596599 145 0.097 -0.287 -0.325 -0.010 -0.210 -0.068 0.4021620805 146 0.097 -0.287 -0.325 -0.010 -0.210 -0.064 0.4021580128 148 0.097 -0.287 -0.325 -0.010 -0.210 -0.037 0.4021560843 149 0.097 -0.287 -0.325 -0.010 -0.210 -0.049 0.4021484425 151 0.097 -0.287 -0.325 -0.010 -0.210 -0.048 0.4021483710 161 0.110 -0.287 -0.325 -0.010 -0.210 -0.048 0.4020705689 162 0.142 -0.287 -0.325 -0.010 -0.210 -0.048 0.4020480905 164 0.129 -0.287 -0.325 -0.010 -0.210 -0.048 0.4020316447 166 0.128 -0.287 -0.325 -0.010 -0.210 -0.048 0.4020316231 176 0.128 -0.299 -0.325 -0.010 -0.210 -0.048 0.4020206404 178 0.128 -0.298 -0.325 -0.010 -0.210 -0.048 0.4020205052 188 0.128 -0.298 -0.330 -0.010 -0.210 -0.048 0.4020108605 189 0.128 -0.298 -0.338 -0.010 -0.210 -0.048 0.4020043477 200 0.128 -0.298 -0.338 -0.015 -0.210 -0.048 0.4020024986 201 0.128 -0.298 -0.338 -0.016 -0.210 -0.048 0.4020024597 202 0.128 -0.298 -0.338 -0.017 -0.210 -0.048 0.4020022474 214 0.128 -0.298 -0.338 -0.017 -0.235 -0.048 0.4019737797 216 0.128 -0.298 -0.338 -0.017 -0.233 -0.048 0.4019735036 226 0.128 -0.298 -0.338 -0.017 -0.233 -0.047 0.4019723365 227 0.128 -0.298 -0.338 -0.017 -0.233 -0.037 0.4019697926 229 0.128 -0.298 -0.338 -0.017 -0.233 -0.039 0.4019696207 230 0.128 -0.298 -0.338 -0.017 -0.233 -0.038 0.4019695713 237 0.139 -0.303 -0.343 -0.019 -0.241 -0.034 0.4019553703 239 0.139 -0.303 -0.343 -0.019 -0.241 -0.035 0.4019552790 240 0.139 -0.303 -0.343 -0.019 -0.241 -0.035 0.4019552108 249 0.139 -0.303 -0.343 -0.019 -0.241 -0.040 0.4019530545 250 0.139 -0.303 -0.343 -0.019 -0.241 -0.043 0.4019523275 251 0.139 -0.303 -0.343 -0.019 -0.241 -0.045 0.4019520111 254 0.139 -0.303 -0.343 -0.019 -0.241 -0.051 0.4019515662 264 0.139 -0.301 -0.343 -0.019 -0.241 -0.051 0.4019500213 266 0.139 -0.297 -0.343 -0.019 -0.241 -0.051 0.4019491027 267 0.139 -0.298 -0.343 -0.019 -0.241 -0.051 0.4019490916 277 0.139 -0.298 -0.342 -0.019 -0.241 -0.051 0.4019489570 287 0.139 -0.298 -0.342 -0.013 -0.241 -0.051 0.4019469132 306 0.145 -0.300 -0.344 -0.014 -0.245 -0.049 0.4019430588 307 0.145 -0.300 -0.344 -0.014 -0.245 -0.049 0.4019429974 309 0.144 -0.300 -0.344 -0.014 -0.245 -0.049 0.4019428728 310 0.144 -0.300 -0.344 -0.014 -0.245 -0.049 0.4019427374 323 0.144 -0.300 -0.344 -0.014 -0.245 -0.057 0.4019424803 324 0.144 -0.300 -0.344 -0.014 -0.245 -0.054 0.4019422624 325 0.144 -0.300 -0.344 -0.014 -0.245 -0.055 0.4019420702 334 0.144 -0.296 -0.344 -0.014 -0.245 -0.055 0.4019382623 336 0.144 -0.292 -0.344 -0.014 -0.245 -0.055 0.4019374877 337 0.144 -0.293 -0.344 -0.014 -0.245 -0.055 0.4019374774 347 0.144 -0.293 -0.347 -0.014 -0.245 -0.055 0.4019368710 348 0.144 -0.293 -0.348 -0.014 -0.245 -0.055 0.4019368088 358 0.144 -0.293 -0.348 -0.009 -0.245 -0.055 0.4019343908 376 0.146 -0.294 -0.348 -0.010 -0.246 -0.054 0.4019340641 383 0.147 -0.287 -0.352 -0.005 -0.247 -0.060 0.4019329783 389 0.146 -0.290 -0.351 -0.007 -0.246 -0.058 0.4019324678 390 0.146 -0.289 -0.351 -0.006 -0.246 -0.058 0.4019322724 392 0.146 -0.289 -0.351 -0.006 -0.246 -0.058 0.4019322392 396 0.146 -0.289 -0.351 -0.006 -0.246 -0.058 0.4019320654 398 0.146 -0.289 -0.351 -0.006 -0.246 -0.058 0.4019320567 408 0.146 -0.289 -0.351 -0.006 -0.246 -0.060 0.4019319460 431 0.146 -0.289 -0.352 -0.006 -0.246 -0.060 0.4019319163 452 0.146 -0.289 -0.352 -0.006 -0.248 -0.060 0.4019316642 466 0.146 -0.289 -0.352 -0.006 -0.248 -0.060 0.4019316593 478 0.146 -0.289 -0.352 -0.006 -0.248 -0.061 0.4019314675 493 0.146 -0.289 -0.352 -0.006 -0.248 -0.061 0.4019314352 503 0.146 -0.289 -0.353 -0.006 -0.248 -0.061 0.4019314289 533 0.146 -0.290 -0.353 -0.007 -0.248 -0.061 0.4019313951 559 0.146 -0.290 -0.353 -0.007 -0.248 -0.061 0.4019313790 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 0.999997 1 -25.0 -25.0 25.0 1.011296 2 -25.0 25.0 -25.0 1.036320 3 -25.0 25.0 25.0 1.006262 4 25.0 -25.0 -25.0 1.043766 5 25.0 -25.0 25.0 1.027277 6 25.0 25.0 -25.0 1.018895 7 25.0 25.0 25.0 1.035563 REL: 8 0.401931 8.179374 1.022422 rel = 0.393117 Number of iterations 7 Min cost was 0.401931 Number of FunctionCalls 639 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 90.078000 sec Parameters at optimum (transmm) 0.14617 -0.28983 -0.35263 Parameters at optimum (rotdeg) -0.00678 -0.24804 -0.06055 Final costs ---------------- Number of surface hits 249202 WM Intensity 356.2217 +/- 150.1759 Ctx Intensity 482.5856 +/- 181.1256 Pct Contrast 28.5465 +/- 36.6572 Cost 0.4019 RelCost 0.4033 Reg at min cost was 0.988 0.122 -0.094 2.078; 0.106 -0.097 0.990 -43.903; 0.112 -0.988 -0.109 -6.222; 0.000 0.000 0.000 1.000; Writing optimal reg to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.988 0.118 -0.096 1.952; 0.107 -0.097 0.990 -43.610; 0.108 -0.988 -0.108 -5.883; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 -0.004 -0.002 -0.126; 0.001 0.000 -0.000 0.293; -0.004 -0.001 0.001 0.339; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.580689 Computing change in rh position Surface RMS Diff (mm) 0.514780 0.706305 mri_segreg done tkregister2_cmdl --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /sw/global/applications/freesurfer/5.2.0/x86_64/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz reg file /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.988 0.122 -0.094 2.078; 0.106 -0.097 0.990 -43.903; 0.112 -0.988 -0.109 -6.222; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz Tmov: -------------------- -2.398 0.000 0.000 153.500; 0.000 0.000 2.400 -72.000; 0.000 -2.398 0.000 153.500; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.988 0.122 -0.094 2.078; 0.106 -0.097 0.990 -43.903; 0.112 -0.988 -0.109 -6.222; 0.000 0.000 0.000 1.000; Determinant 1 subject = 64-10-069-1_T1 RegMat --------------------------- 0.988 0.122 -0.094 2.078; 0.106 -0.097 0.990 -43.903; 0.112 -0.988 -0.109 -6.222; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -13.806, ref det = -1 Cleaning up Started at Tue Apr 9 21:50:34 CEST 2013 Ended at Tue Apr 9 21:54:07 CEST 2013 BBR-Run-Time-Sec 213 bbregister Done To check results, run: tkregister2 --mov /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -concat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2diff.bbr.mat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2anatorig.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anat.bbr.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Tue Apr 9 21:54:07 CEST 2013 flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_mni.nii.gz -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2anat.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat -concat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anat.flt.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.flt.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat -concat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.bbr.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2mni.mat -concat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2anat.mat convert_xfm -omat /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2anatorig.mat -inverse /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Tue Apr 9 21:57:42 CEST 2013 mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 443695 values in range Counting number of voxels Found 443695 voxels in final mask mri_binarize done mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 468887 values in range Counting number of voxels Found 468887 voxels in final mask mri_binarize done mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 22935 values in range Counting number of voxels Found 22935 voxels in final mask mri_binarize done mri_aparc2aseg --s 64-10-069-1_T1 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /fastfs/igis/MRI_fs_rec_t1 subject 64-10-069-1_T1 outvol /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/surf/lh.white Reading lh pial surface /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/surf/lh.pial Loading lh annotations from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/surf/rh.white Reading rh pial surface /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/surf/rh.pial Loading rh annotations from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/ribbon.mgz Loading filled from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 832955 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 1 clusters 0 k 961.000000 Fixing Parahip RH WM Found 2 clusters 0 k 1.000000 1 k 737.000000 Writing output aseg to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 421042 values in range Counting number of voxels Found 421042 voxels in final mask mri_binarize done mri_binarize --i /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 683313 values in range Counting number of voxels Found 683313 voxels in final mask mri_binarize done mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 16 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline mri_binarize --i /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz --match 16 --o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname n064 machine x86_64 user pfuhl input /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 17940 values in range Counting number of voxels Found 17940 voxels in final mask mri_binarize done fslmaths /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz -add /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/Brain-Stem.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/brainmask.mgz... TR=1900.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 8.9407e-08, 0) j_ras = (0, 0, -1) k_ras = (5.96046e-08, 1, 0) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz -mul /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /fastfs/igis/MRI_fs_rec_t1/64-10-069-1_T1/mri/aparc+aseg.mgz... TR=1900.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 8.9407e-08, 0) j_ras = (0, 0, -1) k_ras = (5.96046e-08, 1, 0) writing to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/White-Matter.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/White-Matter.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter++.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/White-Matter++.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/White-Matter++.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/White-Matter++.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/notventricles.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/notventricles.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/notventricles.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/notventricles.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/cortex.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex+2mm.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm+bs.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex+2mm+bs.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/cortex+2mm+bs.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg+2mm.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg_mask.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg_mask.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/aparc+aseg_mask.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/anat_brain_mask.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask-vent.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/anat_brain_mask-vent.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/lowb.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz -k /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi_snr.txt flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lowb_brain_mask.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lowb_brain_mask.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lowb_brain_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/lowb_brain_mask.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anatorig.flt.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lowb_brain_mask.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lowb_brain_mask.nii.gz -ref /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/brain_anat_orig.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Tue Apr 9 22:06:40 CEST 2013 dtifit -k /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dwi.nii.gz -m /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvecs -b /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/bvals -o /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit 0 128 0 128 0 60 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_FA.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L1.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L1.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L2.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L2.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L3.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L3.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_MD.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_MD.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_MO.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_MO.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_S0.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_S0.flt.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.flt.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L1.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L2.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_L3.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_MD.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_MO.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat flirt -in /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_S0.nii.gz -ref /sw/global/libraries/fsl/5.0.1/x86_64/data/standard/MNI152_T1_1mm_brain.nii.gz -out /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Tue Apr 9 22:07:28 CEST 2013 /sw/global/applications/freesurfer/5.2.0/x86_64/bin/dmri_train --outdir /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.64-10-069-1_T1.51215.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bb r.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlab el/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg_mask.nii.gz --fa /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz --cptdir /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /fastfs/igis/MRI_fs_rec_dti/scripts cmdline /sw/global/applications/freesurfer/5.2.0/x86_64/bin/dmri_train --outdir /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.64-10-069-1_T1.51215.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.c cg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii .gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg_mask.nii.gz --fa /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz --cptdir /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff --reg /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname n064 machine x86_64 user pfuhl Output directory: /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni Output directory in test subject's space: /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.64-10-069-1_T1.51215.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/dtifit_FA.nii.gz Loading affine registration from /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 920 streamlines for straying off mask INFO: Rejected 70 streamlines for reversing direction INFO: Rejected 35 streamlines as length outliers INFO: Have 7407 total streamlines (min/mean/max length: 59/97/128) Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 5042 non-truncated streamlines (min/mean/max length: 59/98/129) INFO: Center of mass of start points: (97+/-3, 98+/-6, 39+/-12) INFO: Center of mass of midpoints: (112+/-3, 110+/-4, 78+/-7) INFO: Center of mass of end points: (112+/-8, 106+/-9, 140+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 36436 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0269682 INFO: Points where local peeks in curvature occur are 101 105 52 (curv = 0.0437772) 109 110 67 (curv = 0.0329591) 115 110 94 (curv = 0.0296418) 115 107 109 (curv = 0.0601925) 115 103 117 (curv = 0.0835571) 114 103 127 (curv = 0.0604931) INFO: Intermediate dominant points are 96 100 30 101 105 52 112 110 74 115 110 94 115 103 117 116 103 139 INFO: Final dominant points are 96 100 30 101 105 52 114 110 81 115 110 94 115 103 117 116 103 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 96 100 30 101 105 51 112 110 73 115 110 96 115 103 115 116 103 139 INFO: Distances between consecutive points are 22 25 23 20 24 INFO: Selected control points in test subject's space are 67 57 9 69 60 17 74 63 25 75 64 34 75 61 41 76 62 51 INFO: Distances between consecutive points in test subject's space are 9 10 9 8 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0235572 INFO: Points where local peeks in curvature occur are 101 104 53 (curv = 0.0448348) 107 110 65 (curv = 0.042912) 112 110 78 (curv = 0.0304801) 112 108 102 (curv = 0.0331015) 114 102 122 (curv = 0.0537118) INFO: Intermediate dominant points are 96 95 28 101 104 53 112 110 78 112 108 102 114 102 122 115 104 139 INFO: Final dominant points are 96 95 28 101 104 53 112 110 78 112 108 102 114 102 122 115 104 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 96 95 28 101 103 49 110 110 71 112 109 94 114 104 116 115 104 139 INFO: Distances between consecutive points are 23 25 23 23 23 INFO: Selected control points in test subject's space are 67 55 8 69 59 16 73 63 24 74 63 33 75 62 42 75 63 51 INFO: Distances between consecutive points in test subject's space are 9 10 9 9 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.022515 INFO: Points where local peeks in curvature occur are 102 106 54 (curv = 0.0294948) 109 111 68 (curv = 0.0367998) 111 110 76 (curv = 0.0360823) 112 110 85 (curv = 0.0234819) 112 109 98 (curv = 0.0295163) 112 108 101 (curv = 0.0270814) 113 105 113 (curv = 0.0230256) 114 102 121 (curv = 0.0580446) INFO: Intermediate dominant points are 95 99 31 102 106 53 109 111 68 112 109 98 114 102 121 114 104 139 INFO: Final dominant points are 95 99 31 103 107 57 109 111 68 112 109 98 114 102 121 114 104 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 95 99 31 101 106 52 111 110 73 112 109 95 114 104 116 114 104 139 INFO: Distances between consecutive points are 23 24 22 22 23 INFO: Selected control points in test subject's space are 67 57 9 69 60 17 73 63 25 74 63 34 75 62 42 75 63 51 INFO: Distances between consecutive points in test subject's space are 9 9 9 8 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0243557 INFO: Points where local peeks in curvature occur are 102 106 54 (curv = 0.0318737) 113 110 75 (curv = 0.0415317) 115 109 86 (curv = 0.0275971) 116 109 99 (curv = 0.0507434) 115 102 118 (curv = 0.0654949) INFO: Intermediate dominant points are 96 100 30 102 106 54 113 110 75 116 109 98 115 102 118 116 103 139 INFO: Final dominant points are 96 100 30 102 106 54 113 110 75 115 106 107 115 102 118 116 103 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 96 100 30 101 106 51 112 110 73 115 109 96 115 103 116 116 103 139 INFO: Distances between consecutive points are 22 25 23 21 23 INFO: Selected control points in test subject's space are 67 57 9 69 60 17 74 63 25 75 63 34 75 61 42 76 62 51 INFO: Distances between consecutive points in test subject's space are 9 10 9 8 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.026958 INFO: Points where local peeks in curvature occur are 102 106 54 (curv = 0.031625) 108 110 66 (curv = 0.0454841) 113 108 82 (curv = 0.0484115) 112 108 90 (curv = 0.0369529) 112 107 95 (curv = 0.0272574) 113 106 100 (curv = 0.0342498) 113 101 120 (curv = 0.0673068) INFO: Intermediate dominant points are 95 100 32 108 110 66 113 108 82 113 106 100 113 101 120 113 104 139 INFO: Final dominant points are 95 100 32 108 110 66 113 108 82 113 106 100 113 101 120 113 104 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 95 100 32 102 105 53 112 109 74 112 107 96 113 102 117 113 104 139 INFO: Distances between consecutive points are 23 24 22 22 22 INFO: Selected control points in test subject's space are 67 58 9 70 60 17 74 62 25 74 62 34 74 61 42 74 63 51 INFO: Distances between consecutive points in test subject's space are 9 9 9 8 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 106 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0295823 INFO: Points where local peeks in curvature occur are 101 101 44 (curv = 0.0325976) 101 103 54 (curv = 0.0712275) 104 107 60 (curv = 0.0373368) 111 109 73 (curv = 0.054376) 113 103 108 (curv = 0.0336247) 112 101 122 (curv = 0.0416593) INFO: Intermediate dominant points are 97 95 28 101 103 54 111 109 73 113 103 108 112 101 122 111 104 139 INFO: Final dominant points are 97 95 28 101 103 54 111 109 73 113 103 108 112 101 122 111 104 139 WARN: Defaulting to equidistant control points INFO: Selected control points are 97 95 28 101 102 49 110 109 71 112 107 94 112 101 118 111 104 139 INFO: Distances between consecutive points are 22 25 23 25 21 INFO: Selected control points in test subject's space are 68 55 8 69 59 16 73 62 24 74 62 33 74 61 43 74 63 51 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 8 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 100 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0298325 INFO: Points where local peeks in curvature occur are 102 104 56 (curv = 0.0447196) 112 109 75 (curv = 0.0457921) 114 108 87 (curv = 0.033891) 114 108 96 (curv = 0.0365225) 114 105 109 (curv = 0.0380034) 115 104 112 (curv = 0.0571808) 114 102 118 (curv = 0.0569585) 113 103 125 (curv = 0.0523566) INFO: Intermediate dominant points are 100 98 37 102 104 56 112 109 75 114 108 96 115 104 112 112 103 138 INFO: Final dominant points are 100 98 37 102 104 56 112 109 75 114 108 96 115 104 112 112 103 138 INFO: Selected control points are 100 98 37 102 105 56 112 109 75 114 108 96 114 103 112 112 103 138 INFO: Distances between consecutive points are 20 22 21 17 26 INFO: Selected control points in test subject's space are 69 57 11 70 60 19 74 62 26 74 63 34 75 61 40 74 62 50 INFO: Distances between consecutive points in test subject's space are 9 8 8 6 10 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 136.418 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 562 streamlines for straying off mask INFO: Rejected 66 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 8637 total streamlines (min/mean/max length: 58/98/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 5798 non-truncated streamlines (min/mean/max length: 58/98/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-7, 104+/-10, 140+/-6) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 43534 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 111 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0334247 INFO: Points where local peeks in curvature occur are 79 99 57 (curv = 0.0415372) 74 107 66 (curv = 0.0652505) 68 109 74 (curv = 0.0500638) 64 111 89 (curv = 0.0342488) 63 111 100 (curv = 0.0472298) 67 104 120 (curv = 0.0671901) 71 104 131 (curv = 0.0774299) INFO: Intermediate dominant points are 81 93 29 79 97 52 74 107 66 63 111 100 67 104 119 70 108 143 INFO: Final dominant points are 81 93 29 79 99 56 74 107 66 63 111 100 71 104 131 70 108 143 INFO: Selected control points are 81 93 29 79 97 56 72 108 68 62 110 100 70 103 129 70 108 143 INFO: Distances between consecutive points are 27 18 34 31 15 INFO: Selected control points in test subject's space are 62 55 8 61 57 19 58 61 23 55 63 35 58 61 47 58 64 52 INFO: Distances between consecutive points in test subject's space are 11 6 13 13 6 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 173.7 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 98 streamlines for straying off mask INFO: Rejected 30 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3458 total streamlines (min/mean/max length: 53/90/134) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1335 non-truncated streamlines (min/mean/max length: 53/96/134) INFO: Center of mass of start points: (134+/-8, 136+/-5, 41+/-9) INFO: Center of mass of midpoints: (132+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 71+/-13) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38176 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0226989 INFO: Points where local peeks in curvature occur are 133 105 60 (curv = 0.0243927) 130 85 66 (curv = 0.0338364) 123 72 70 (curv = 0.0585503) INFO: Intermediate dominant points are 139 136 37 133 105 60 131 92 65 123 72 70 109 46 65 INFO: Final dominant points are 139 136 37 133 105 60 129 84 67 123 72 70 109 46 65 WARN: Defaulting to equidistant control points INFO: Selected control points are 139 136 37 133 114 56 131 92 65 122 69 70 109 46 65 INFO: Distances between consecutive points are 30 24 25 27 INFO: Selected control points in test subject's space are 83 72 11 81 64 18 81 56 22 78 47 25 73 38 23 INFO: Distances between consecutive points in test subject's space are 11 9 10 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0353083 INFO: Points where local peeks in curvature occur are 133 129 47 (curv = 0.0772084) 134 124 47 (curv = 0.0660057) 132 114 54 (curv = 0.0755768) 134 103 56 (curv = 0.0649873) 131 83 66 (curv = 0.0582518) 125 72 71 (curv = 0.035855) INFO: Intermediate dominant points are 136 141 48 132 114 54 131 83 66 124 69 71 115 45 75 INFO: Final dominant points are 136 141 48 132 114 54 131 83 66 119 57 75 115 45 75 INFO: Selected control points are 136 141 48 133 113 52 131 84 66 119 59 75 115 45 75 INFO: Distances between consecutive points are 28 32 29 15 INFO: Selected control points in test subject's space are 82 74 15 81 64 17 81 53 23 77 43 27 76 38 27 INFO: Distances between consecutive points in test subject's space are 10 13 11 5 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 36.262 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 61 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2079 total streamlines (min/mean/max length: 52/92/133) Processing pathway 4 of 18... Matching streamline ends INFO: Have 978 non-truncated streamlines (min/mean/max length: 57/100/125) INFO: Center of mass of start points: (46+/-8, 140+/-6, 42+/-9) INFO: Center of mass of midpoints: (47+/-4, 105+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 46+/-11, 73+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28294 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0369794 INFO: Points where local peeks in curvature occur are 46 119 49 (curv = 0.0524572) 48 113 55 (curv = 0.0452764) 48 107 58 (curv = 0.0640623) 47 94 61 (curv = 0.0696708) 59 69 74 (curv = 0.0434269) INFO: Intermediate dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 INFO: Final dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 137 39 48 113 55 49 87 65 62 61 75 70 42 62 INFO: Distances between consecutive points are 29 28 31 24 INFO: Selected control points in test subject's space are 46 71 11 49 63 18 50 53 22 55 43 27 58 36 22 INFO: Distances between consecutive points in test subject's space are 11 11 12 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 46 71 11 49 62 18 50 53 23 55 44 27 59 36 23 INFO: Distances between consecutive points in test subject's space are 12 10 11 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0281989 INFO: Points where local peeks in curvature occur are 46 124 49 (curv = 0.0525813) 47 86 64 (curv = 0.0457634) 55 75 71 (curv = 0.0579393) 59 65 73 (curv = 0.0398178) 67 57 74 (curv = 0.0410269) INFO: Intermediate dominant points are 46 146 43 46 124 49 45 97 60 55 75 71 76 42 76 INFO: Final dominant points are 46 146 43 46 124 49 46 90 62 55 75 71 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 46 146 43 46 124 49 45 98 59 57 71 72 76 42 76 INFO: Distances between consecutive points are 23 28 32 35 INFO: Selected control points in test subject's space are 48 75 13 48 67 15 48 57 20 53 47 25 61 36 28 INFO: Distances between consecutive points in test subject's space are 8 11 12 14 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 49 74 12 49 66 17 48 57 21 53 47 26 61 36 28 INFO: Distances between consecutive points in test subject's space are 9 10 12 14 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 49 74 12 49 66 17 48 57 21 54 47 26 61 36 28 INFO: Distances between consecutive points in test subject's space are 9 10 13 13 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 48 74 12 49 66 16 49 57 20 54 47 26 60 37 29 INFO: Distances between consecutive points in test subject's space are 9 10 13 12 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 48 74 12 49 66 15 48 57 20 53 48 25 60 38 27 INFO: Distances between consecutive points in test subject's space are 9 10 11 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 46 74 15 49 66 17 49 57 20 52 49 25 55 39 26 INFO: Distances between consecutive points in test subject's space are 9 9 10 10 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 46 74 15 49 64 18 49 54 23 52 48 25 56 40 26 INFO: Distances between consecutive points in test subject's space are 11 11 7 9 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 23.255 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from 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streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 469 streamlines for straying off mask INFO: Rejected 24 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4801 total streamlines (min/mean/max length: 8/56/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3211 non-truncated streamlines (min/mean/max length: 8/55/99) INFO: Center of mass of start points: (128+/-6, 143+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 54+/-3) INFO: Center of mass of end points: (113+/-11, 152+/-17, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 21332 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 78 75 12 79 68 17 74 75 20 72 78 19 71 84 17 INFO: Distances between consecutive points in test subject's space are 9 9 4 6 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 41.05 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 659 streamlines for straying off mask INFO: Rejected 109 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6153 total streamlines (min/mean/max length: 8/62/104) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4584 non-truncated streamlines (min/mean/max length: 8/62/103) INFO: Center of mass of start points: (54+/-6, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 54+/-3) INFO: Center of mass of end points: (71+/-9, 162+/-17, 57+/-4) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 23349 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0585941 INFO: Points where local peeks in curvature occur are 52 133 44 (curv = 0.100955) 56 128 55 (curv = 0.127252) 73 154 62 (curv = 0.0694826) INFO: Intermediate dominant points are 50 146 41 56 128 55 65 141 60 73 154 62 76 178 55 INFO: Final dominant points are 50 146 41 56 128 55 68 144 60 73 154 62 76 178 55 INFO: Selected control points are 50 146 41 55 127 53 67 144 61 73 154 61 76 178 55 INFO: Distances between consecutive points are 23 22 12 25 INFO: Selected control points in test subject's space are 49 75 12 52 68 17 56 75 20 58 79 19 59 88 17 INFO: Distances between consecutive points in test subject's space are 9 9 5 9 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 58.235 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 729 streamlines for straying off mask INFO: Rejected 228 streamlines for reversing direction INFO: Rejected 129 streamlines as length outliers INFO: Have 8689 total streamlines (min/mean/max length: 87/132/162) Processing pathway 7 of 18... Matching streamline ends INFO: Have 6097 non-truncated streamlines (min/mean/max length: 87/133/166) INFO: Center of mass of start points: (102+/-6, 39+/-9, 100+/-16) INFO: Center of mass of midpoints: (90+/-3, 89+/-4, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 100+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 68023 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 70 37 40 73 39 31 74 48 31 65 56 30 57 49 31 57 39 32 60 36 42 INFO: Distances between consecutive points in test subject's space are 10 9 12 11 10 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 70 37 40 73 38 31 74 48 31 67 55 30 58 50 31 56 41 31 60 36 42 INFO: Distances between consecutive points in test subject's space are 10 10 10 10 9 13 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 70 37 40 73 39 31 74 48 31 66 56 30 57 49 31 57 40 32 60 36 42 INFO: Distances between consecutive points in test subject's space are 10 9 11 11 9 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0506223 INFO: Points where local peeks in curvature occur are 107 44 88 (curv = 0.0843619) 117 56 86 (curv = 0.137763) 89 91 85 (curv = 0.0854668) 61 63 87 (curv = 0.0904317) 63 54 86 (curv = 0.0804745) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 72 86 89 91 85 61 63 87 67 49 88 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 103 84 86 89 91 85 61 63 87 71 43 99 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 91 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 29 25 28 INFO: Selected control points in test subject's space are 70 37 40 73 39 31 74 48 31 66 56 30 57 49 31 57 40 32 60 36 42 INFO: Distances between consecutive points in test subject's space are 10 9 11 11 9 11 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0497442 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.10325) 116 55 86 (curv = 0.109404) 89 91 85 (curv = 0.0949491) 60 60 87 (curv = 0.13078) 65 52 87 (curv = 0.0663431) 70 45 94 (curv = 0.0525269) INFO: Intermediate dominant points are 98 38 109 116 55 86 110 72 85 89 91 85 60 60 87 70 45 94 72 39 114 INFO: Final dominant points are 98 38 109 116 55 86 102 84 85 89 91 85 60 60 87 70 45 94 72 39 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 38 109 109 46 86 111 70 85 92 90 84 69 76 87 64 53 87 72 39 114 INFO: Distances between consecutive points are 27 24 28 27 24 31 INFO: Selected control points in test subject's space are 69 36 40 73 39 31 74 48 31 66 55 30 58 50 31 56 41 32 60 36 42 INFO: Distances between consecutive points in test subject's space are 10 9 11 9 9 12 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0494829 INFO: Points where local peeks in curvature occur are 107 45 86 (curv = 0.0971877) 116 56 85 (curv = 0.109842) 93 90 84 (curv = 0.0848122) 86 90 85 (curv = 0.0924089) 60 60 87 (curv = 0.0943261) 69 47 93 (curv = 0.0555937) INFO: Intermediate dominant points are 98 39 108 116 56 85 111 70 85 86 90 85 67 74 87 60 60 87 71 41 113 INFO: Final dominant points are 98 39 108 116 56 85 100 86 85 86 90 85 66 73 87 60 60 87 71 41 113 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 108 108 45 86 111 70 85 90 90 84 67 74 87 67 49 90 71 41 113 INFO: Distances between consecutive points are 25 25 29 28 25 25 INFO: Selected control points in test subject's space are 69 37 40 73 38 31 74 48 31 66 55 30 57 49 31 57 39 33 59 37 42 INFO: Distances between consecutive points in test subject's space are 10 10 11 11 10 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0477143 INFO: Points where local peeks in curvature occur are 105 42 89 (curv = 0.0636933) 109 46 85 (curv = 0.0675706) 116 56 85 (curv = 0.113) 95 90 84 (curv = 0.0810775) 90 91 84 (curv = 0.0781857) 61 62 87 (curv = 0.0798498) 63 55 86 (curv = 0.0870717) 65 51 87 (curv = 0.075599) 69 47 91 (curv = 0.0615153) INFO: Intermediate dominant points are 99 39 103 116 56 85 109 75 85 95 90 84 65 71 87 63 55 86 72 39 111 INFO: Final dominant points are 99 39 103 116 56 85 107 79 85 95 90 84 63 68 87 63 55 86 72 39 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 113 50 85 110 73 85 90 91 84 67 75 86 65 52 87 72 39 111 INFO: Distances between consecutive points are 25 23 27 28 23 28 INFO: Selected control points in test subject's space are 70 36 38 75 40 31 73 49 30 65 56 30 57 49 31 57 40 32 60 36 41 INFO: Distances between consecutive points in test subject's space are 9 9 11 11 9 10 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0503817 INFO: Points where local peeks in curvature occur are 107 45 86 (curv = 0.0956417) 116 56 85 (curv = 0.128441) 92 90 84 (curv = 0.091457) 82 88 85 (curv = 0.0708764) 61 60 87 (curv = 0.093314) INFO: Intermediate dominant points are 99 39 109 116 56 85 111 70 85 92 90 84 67 74 87 61 60 87 72 42 114 INFO: Final dominant points are 99 39 109 116 56 85 106 79 85 92 90 84 67 74 87 61 60 87 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 107 45 86 112 69 85 91 90 84 68 75 87 66 50 89 72 42 114 INFO: Distances between consecutive points are 25 25 30 28 25 27 INFO: Selected control points in test subject's space are 70 37 40 73 38 31 74 48 31 66 55 30 57 49 31 57 40 32 60 38 42 INFO: Distances between consecutive points in test subject's space are 10 10 11 11 9 11 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498937 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0939838) 116 55 85 (curv = 0.1206) 92 90 84 (curv = 0.0923814) 82 88 85 (curv = 0.0708764) 60 61 87 (curv = 0.0968523) 70 45 98 (curv = 0.0510343) INFO: Intermediate dominant points are 98 39 108 116 55 85 111 71 85 92 90 84 60 61 87 70 45 98 72 42 114 INFO: Final dominant points are 98 39 108 116 55 85 105 80 85 92 90 84 60 61 87 70 45 98 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 108 108 45 86 112 68 85 92 90 84 70 77 87 63 53 88 72 42 114 INFO: Distances between consecutive points are 25 23 30 26 25 30 INFO: Selected control points in test subject's space are 69 37 40 73 38 31 74 47 31 66 55 30 58 50 31 56 41 32 60 38 42 INFO: Distances between consecutive points in test subject's space are 10 9 11 9 9 11 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0511108 INFO: Points where local peeks in curvature occur are 111 44 81 (curv = 0.126095) 117 55 85 (curv = 0.0679453) 117 58 85 (curv = 0.0668512) 95 91 84 (curv = 0.0759014) 92 91 84 (curv = 0.0773785) 86 91 85 (curv = 0.0724871) 60 63 87 (curv = 0.125996) 65 51 89 (curv = 0.0688353) INFO: Intermediate dominant points are 105 34 102 111 44 81 112 71 87 92 91 84 60 63 87 67 49 90 73 42 114 INFO: Final dominant points are 105 34 102 111 44 81 105 83 86 92 91 84 60 63 87 71 44 101 73 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 34 102 112 46 82 113 69 87 95 91 84 69 78 88 64 53 88 73 42 114 INFO: Distances between consecutive points are 24 24 29 29 25 30 INFO: Selected control points in test subject's space are 72 35 38 74 39 30 75 48 31 67 56 30 58 50 32 56 41 32 60 38 42 INFO: Distances between consecutive points in test subject's space are 9 9 11 11 9 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0501929 INFO: Points where local peeks in curvature occur are 108 40 83 (curv = 0.114651) 117 59 85 (curv = 0.0737284) 94 91 84 (curv = 0.0845088) 92 91 84 (curv = 0.0845611) 87 91 85 (curv = 0.0643188) 60 64 87 (curv = 0.121734) 62 55 87 (curv = 0.0678002) 65 51 89 (curv = 0.0713952) INFO: Intermediate dominant points are 105 33 103 108 40 83 117 59 85 92 91 84 60 64 87 66 50 90 73 43 114 INFO: Final dominant points are 105 33 103 108 40 83 117 59 85 92 91 84 60 64 87 71 45 101 73 43 114 INFO: Selected control points are 105 33 103 108 41 83 118 60 86 92 91 85 60 64 87 71 44 98 73 43 114 INFO: Distances between consecutive points are 22 22 40 42 25 16 INFO: Selected control points in test subject's space are 72 34 38 73 37 30 77 44 31 66 56 30 55 45 31 59 38 36 60 38 42 INFO: Distances between consecutive points in test subject's space are 9 8 16 16 9 6 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 229.618 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 1275 streamlines for straying off mask INFO: Rejected 408 streamlines for reversing direction INFO: Rejected 66 streamlines as length outliers INFO: Have 25878 total streamlines (min/mean/max length: 49/91/121) Processing pathway 8 of 18... Matching streamline ends INFO: Have 18277 non-truncated streamlines (min/mean/max length: 52/91/124) INFO: Center of mass of start points: (103+/-5, 187+/-6, 76+/-13) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 66994 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 100 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0576977 INFO: Points where local peeks in curvature occur are 108 177 73 (curv = 0.0673171) 109 171 74 (curv = 0.0745523) 105 159 73 (curv = 0.0660246) 102 156 74 (curv = 0.0711383) 88 151 75 (curv = 0.0773312) 77 155 74 (curv = 0.0672784) 71 167 70 (curv = 0.126083) INFO: Intermediate dominant points are 106 193 74 109 171 74 102 156 74 71 167 70 78 194 86 INFO: Final dominant points are 106 193 74 109 171 74 102 156 74 71 167 70 78 194 86 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 193 74 109 169 74 90 151 76 71 167 70 78 194 86 INFO: Distances between consecutive points are 24 26 26 32 INFO: Selected control points in test subject's space are 70 94 24 72 85 24 65 78 25 57 84 23 60 95 28 INFO: Distances between consecutive points in test subject's space are 9 10 10 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0558321 INFO: Points where local peeks in curvature occur are 109 169 73 (curv = 0.0619395) 102 156 74 (curv = 0.0664315) 88 151 75 (curv = 0.0916227) 77 155 74 (curv = 0.0672784) 71 168 70 (curv = 0.129483) INFO: Intermediate dominant points are 105 193 74 102 156 74 88 151 75 71 168 70 77 194 86 INFO: Final dominant points are 105 193 74 102 156 74 77 155 74 71 168 70 77 194 86 INFO: Selected control points are 105 193 74 104 156 74 76 155 75 73 169 69 77 194 86 INFO: Distances between consecutive points are 37 28 16 30 INFO: Selected control points in test subject's space are 70 94 24 70 80 24 59 80 25 58 85 22 59 95 28 INFO: Distances between consecutive points in test subject's space are 14 11 6 12 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 1144.23 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 126 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 52 streamlines as length outliers INFO: Have 13395 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4885 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (115+/-12, 180+/-10, 76+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 44243 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 71 92 25 73 85 24 73 79 26 72 75 26 68 65 27 INFO: Distances between consecutive points in test subject's space are 7 6 4 11 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 256.268 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 130 streamlines for straying off mask INFO: Rejected 21 streamlines for reversing direction INFO: Rejected 23 streamlines as length outliers INFO: Have 11838 total streamlines (min/mean/max length: 31/64/105) Processing pathway 10 of 18... Matching streamline ends INFO: Have 5035 non-truncated streamlines (min/mean/max length: 41/71/94) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39265 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0454359 INFO: Points where local peeks in curvature occur are 66 165 77 (curv = 0.10676) 70 153 77 (curv = 0.080488) 70 139 83 (curv = 0.0795153) INFO: Intermediate dominant points are 67 194 84 66 165 77 70 151 78 70 139 83 80 111 77 INFO: Final dominant points are 67 194 84 66 165 77 70 150 79 70 139 83 80 111 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 194 84 68 174 79 70 153 77 72 133 82 80 111 77 INFO: Distances between consecutive points are 21 21 21 24 INFO: Selected control points in test subject's space are 55 95 27 56 87 26 57 79 26 58 71 28 61 63 27 INFO: Distances between consecutive points in test subject's space are 8 8 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0429525 INFO: Points where local peeks in curvature occur are 66 167 77 (curv = 0.093346) 70 153 77 (curv = 0.0725491) 70 144 82 (curv = 0.0693249) 71 135 82 (curv = 0.0881455) INFO: Intermediate dominant points are 69 194 84 66 167 77 70 151 78 71 135 82 81 111 75 INFO: Final dominant points are 69 194 84 66 167 77 70 146 81 71 135 82 81 111 75 INFO: Selected control points are 69 194 84 68 167 77 70 147 80 72 136 82 81 111 75 INFO: Distances between consecutive points are 28 20 11 27 INFO: Selected control points in test subject's space are 56 95 27 56 84 25 57 77 27 58 72 28 62 63 26 INFO: Distances between consecutive points in test subject's space are 11 7 5 10 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 196.976 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4089 total streamlines (min/mean/max length: 2/45/95) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1353 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 81+/-12, 75+/-12) INFO: Center of mass of midpoints: (111+/-2, 99+/-4, 58+/-5) INFO: Center of mass of end points: (115+/-5, 122+/-13, 42+/-10) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17479 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 64 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.036724 INFO: Points where local peeks in curvature occur are 106 78 78 (curv = 0.0630157) 114 104 48 (curv = 0.0431092) 120 114 42 (curv = 0.105698) INFO: Intermediate dominant points are 110 72 86 109 84 71 114 104 48 120 114 42 116 129 40 INFO: Final dominant points are 110 72 86 111 98 56 114 104 48 120 114 42 116 129 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 72 86 108 83 72 111 98 57 118 110 44 116 129 40 INFO: Distances between consecutive points are 18 21 19 20 INFO: Selected control points in test subject's space are 73 49 31 72 52 25 73 58 19 76 62 14 75 69 12 INFO: Distances between consecutive points in test subject's space are 7 9 7 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0259622 INFO: Points where local peeks in curvature occur are 108 85 69 (curv = 0.0560144) 112 100 56 (curv = 0.0282194) 112 106 51 (curv = 0.0284236) 115 115 44 (curv = 0.0461041) 114 120 41 (curv = 0.0308676) INFO: Intermediate dominant points are 110 79 74 109 92 64 112 100 56 115 115 44 116 131 37 INFO: Final dominant points are 110 79 74 110 93 63 112 100 56 115 115 44 116 131 37 INFO: Selected control points are 110 79 74 109 93 63 112 100 56 114 114 44 116 131 37 INFO: Distances between consecutive points are 18 10 19 18 INFO: Selected control points in test subject's space are 73 51 26 73 56 22 74 58 19 74 63 14 75 70 11 INFO: Distances between consecutive points in test subject's space are 6 4 7 8 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 25.51 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 64 streamlines for straying off mask INFO: Rejected 64 streamlines for reversing direction INFO: Rejected 19 streamlines as length outliers INFO: Have 4089 total streamlines (min/mean/max length: 13/44/89) Processing pathway 12 of 18... Matching streamline ends INFO: Have 1246 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 80+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-3) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16975 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0248091 INFO: Points where local peeks in curvature occur are 68 98 61 (curv = 0.035358) 66 110 44 (curv = 0.0492048) INFO: Intermediate dominant points are 74 76 83 70 90 69 68 98 61 66 110 44 66 130 38 INFO: Final dominant points are 74 76 83 70 91 68 68 98 61 66 110 44 66 130 38 INFO: Selected control points are 74 76 83 71 91 68 67 98 61 66 110 44 66 130 38 INFO: Distances between consecutive points are 21 11 21 21 INFO: Selected control points in test subject's space are 60 50 30 58 55 24 57 57 21 56 61 14 56 69 11 INFO: Distances between consecutive points in test subject's space are 8 4 8 9 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 24.297 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 107 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5170 total streamlines (min/mean/max length: 25/68/135) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1428 non-truncated streamlines (min/mean/max length: 55/86/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 102+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 85+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19803 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0265209 INFO: Points where local peeks in curvature occur are 99 94 104 (curv = 0.027054) 96 101 105 (curv = 0.0600809) 96 118 107 (curv = 0.0466514) 96 130 105 (curv = 0.0535692) 97 138 102 (curv = 0.0358565) 96 144 99 (curv = 0.0421063) INFO: Intermediate dominant points are 101 74 96 96 101 105 96 130 105 97 165 80 INFO: Final dominant points are 101 74 96 96 101 105 96 130 105 97 165 80 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 107 106 97 138 102 97 165 80 INFO: Distances between consecutive points are 35 31 35 INFO: Selected control points in test subject's space are 70 50 35 68 62 38 68 74 36 67 84 27 INFO: Distances between consecutive points in test subject's space are 13 12 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0234366 INFO: Points where local peeks in curvature occur are 99 94 103 (curv = 0.0308894) 96 102 105 (curv = 0.0516391) 97 116 106 (curv = 0.0488006) 95 129 105 (curv = 0.0462705) 96 144 99 (curv = 0.0304346) 95 149 96 (curv = 0.0274997) INFO: Intermediate dominant points are 101 74 97 96 102 105 96 144 99 97 164 81 INFO: Final dominant points are 101 74 97 96 102 105 96 144 99 97 164 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 97 96 106 105 96 137 102 97 164 81 INFO: Distances between consecutive points are 33 31 34 INFO: Selected control points in test subject's space are 70 50 35 68 62 37 67 74 36 67 83 27 INFO: Distances between consecutive points in test subject's space are 12 12 13 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 92 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 16 INFO: Minimum allowable curvature at a dominant point is 0.0256351 INFO: Points where local peeks in curvature occur are 96 103 105 (curv = 0.0433382) 96 113 106 (curv = 0.02817) 96 122 106 (curv = 0.0328888) 95 131 104 (curv = 0.039297) 96 136 102 (curv = 0.0278717) 96 143 100 (curv = 0.0323693) 95 149 96 (curv = 0.0439844) INFO: Intermediate dominant points are 101 74 97 96 103 105 95 149 96 96 164 81 INFO: Final dominant points are 101 74 97 96 103 105 95 149 96 96 164 81 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 97 96 105 105 96 137 102 96 164 81 INFO: Distances between consecutive points are 32 32 34 INFO: Selected control points in test subject's space are 70 50 35 68 62 38 67 74 36 67 83 27 INFO: Distances between consecutive points in test subject's space are 13 12 13 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 90 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0248671 INFO: Points where local peeks in curvature occur are 96 103 105 (curv = 0.0506049) 96 118 107 (curv = 0.0466514) 96 130 105 (curv = 0.0405681) 97 138 102 (curv = 0.0445756) 96 147 98 (curv = 0.0364976) INFO: Intermediate dominant points are 101 74 96 96 103 105 97 138 102 96 163 86 INFO: Final dominant points are 101 74 96 96 103 105 97 138 102 96 163 86 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 104 105 97 134 104 96 163 86 INFO: Distances between consecutive points are 32 30 34 INFO: Selected control points in test subject's space are 70 50 35 68 61 38 68 73 37 67 83 29 INFO: Distances between consecutive points in test subject's space are 12 12 13 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 90 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0312446 INFO: Points where local peeks in curvature occur are 96 102 105 (curv = 0.0503923) 96 113 106 (curv = 0.0370885) 97 119 106 (curv = 0.0735999) 95 131 104 (curv = 0.0453991) 96 139 101 (curv = 0.0448165) 95 146 98 (curv = 0.0388535) INFO: Intermediate dominant points are 101 74 96 97 119 106 96 139 101 96 164 83 INFO: Final dominant points are 101 74 96 97 119 106 96 139 101 96 164 83 WARN: Defaulting to equidistant control points INFO: Selected control points are 101 74 96 96 105 105 95 135 103 96 164 83 INFO: Distances between consecutive points are 33 30 35 INFO: Selected control points in test subject's space are 70 50 35 68 62 38 67 73 36 67 84 28 INFO: Distances between consecutive points in test subject's space are 13 11 14 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 89 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0277984 INFO: Points where local peeks in curvature occur are 96 102 105 (curv = 0.0508618) 96 119 106 (curv = 0.0319921) 95 127 105 (curv = 0.0379623) 96 137 102 (curv = 0.0450365) 95 150 96 (curv = 0.0499709) INFO: Intermediate dominant points are 101 74 96 96 102 105 95 127 105 96 163 86 INFO: Final dominant points are 101 74 96 96 102 105 95 127 105 96 163 86 INFO: Selected control points are 101 74 96 95 99 103 93 123 104 96 163 86 INFO: Distances between consecutive points are 27 24 44 INFO: Selected control points in test subject's space are 70 50 35 67 59 37 66 68 37 67 83 29 INFO: Distances between consecutive points in test subject's space are 10 9 17 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 47.377 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 44 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 4327 total streamlines (min/mean/max length: 30/65/116) Processing pathway 14 of 18... Matching streamline ends INFO: Have 918 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-8, 99+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 160+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18935 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 80 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0239073 INFO: Points where local peeks in curvature occur are 83 107 107 (curv = 0.0460433) 83 121 107 (curv = 0.0398419) 83 124 106 (curv = 0.0366825) 83 139 99 (curv = 0.0407851) INFO: Intermediate dominant points are 80 82 99 83 107 107 83 139 99 86 162 94 INFO: Final dominant points are 80 82 99 83 107 107 83 139 99 86 162 94 WARN: Defaulting to equidistant control points INFO: Selected control points are 80 82 99 83 108 107 83 135 101 86 162 94 INFO: Distances between consecutive points are 27 28 28 INFO: Selected control points in test subject's space are 62 52 36 63 63 38 62 73 35 63 83 32 INFO: Distances between consecutive points in test subject's space are 11 10 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0295734 INFO: Points where local peeks in curvature occur are 84 111 108 (curv = 0.0423259) 83 124 107 (curv = 0.0611626) 83 139 100 (curv = 0.0437406) 81 144 96 (curv = 0.0386019) INFO: Intermediate dominant points are 79 80 97 83 108 108 83 124 107 86 162 95 INFO: Final dominant points are 79 80 97 84 109 108 83 124 107 86 162 95 WARN: Defaulting to equidistant control points INFO: Selected control points are 79 80 97 83 107 108 83 134 102 86 162 95 INFO: Distances between consecutive points are 29 28 29 INFO: Selected control points in test subject's space are 62 52 35 63 62 39 62 72 36 63 83 32 INFO: Distances between consecutive points in test subject's space are 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 77 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0216166 INFO: Points where local peeks in curvature occur are 83 100 105 (curv = 0.0426406) 83 121 107 (curv = 0.044403) 81 136 102 (curv = 0.0258204) INFO: Intermediate dominant points are 79 78 101 83 100 105 83 121 107 79 156 91 INFO: Final dominant points are 79 78 101 83 100 105 83 121 107 79 156 91 INFO: Selected control points are 79 78 101 80 98 103 81 118 105 79 156 91 INFO: Distances between consecutive points are 20 20 41 INFO: Selected control points in test subject's space are 62 51 37 62 59 37 62 66 37 60 80 31 INFO: Distances between consecutive points in test subject's space are 8 7 15 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 32.435 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 358 streamlines for straying off mask INFO: Rejected 689 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 9181 total streamlines (min/mean/max length: 20/59/101) Processing pathway 15 of 18... Matching streamline ends INFO: Have 4049 non-truncated streamlines (min/mean/max length: 26/65/101) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 103+/-4) INFO: Center of mass of end points: (141+/-10, 83+/-11, 111+/-11) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 49186 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 88 72 34 80 66 35 80 59 37 81 55 38 88 55 41 INFO: Distances between consecutive points in test subject's space are 10 7 4 8 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 126.596 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 383 streamlines for straying off mask INFO: Rejected 413 streamlines for reversing direction INFO: Rejected 95 streamlines as length outliers INFO: Have 14731 total streamlines (min/mean/max length: 18/64/97) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6738 non-truncated streamlines (min/mean/max length: 27/69/101) INFO: Center of mass of start points: (34+/-8, 130+/-6, 98+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 80+/-10, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 65213 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 INFO: Selected control points are 33 127 97 50 118 101 51 91 105 53 80 102 39 73 122 INFO: Distances between consecutive points are 20 27 12 25 INFO: Selected control points in test subject's space are 43 69 34 50 66 36 51 56 38 52 51 37 47 49 45 INFO: Distances between consecutive points in test subject's space are 8 10 5 10 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 347.358 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 388 streamlines for straying off mask INFO: Rejected 78 streamlines for reversing direction INFO: Rejected 53 streamlines as length outliers INFO: Have 7375 total streamlines (min/mean/max length: 34/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4678 non-truncated streamlines (min/mean/max length: 34/92/139) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 46333 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0469502 INFO: Points where local peeks in curvature occur are 128 119 97 (curv = 0.107817) 123 92 101 (curv = 0.0917098) 124 84 94 (curv = 0.0707617) INFO: Intermediate dominant points are 141 137 86 128 119 97 123 92 101 129 80 84 142 87 63 INFO: Final dominant points are 141 137 86 128 119 97 123 92 101 135 81 74 142 87 63 INFO: Selected control points are 141 137 86 130 118 96 123 91 101 134 79 75 142 87 63 INFO: Distances between consecutive points are 24 28 31 16 INFO: Selected control points in test subject's space are 84 74 30 80 67 34 78 57 36 82 51 27 85 54 22 INFO: Distances between consecutive points in test subject's space are 9 10 12 7 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 123.929 sec. Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /sw/global/applications/freesurfer/5.2.0/x86_64/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 72 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 3024 total streamlines (min/mean/max length: 46/90/141) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1610 non-truncated streamlines (min/mean/max length: 55/91/143) INFO: Center of mass of start points: (40+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31846 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 47 73 28 52 67 34 53 58 36 50 51 31 42 51 24 INFO: Distances between consecutive points in test subject's space are 10 9 9 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0507033 INFO: Points where local peeks in curvature occur are 53 120 99 (curv = 0.131558) 55 97 103 (curv = 0.0765911) 53 83 93 (curv = 0.0600204) 50 80 86 (curv = 0.0589787) 39 86 71 (curv = 0.0858641) INFO: Intermediate dominant points are 32 128 93 53 120 99 55 97 103 53 83 93 28 90 70 INFO: Final dominant points are 32 128 93 53 120 99 55 97 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 128 93 53 117 100 55 94 102 47 80 80 28 90 70 INFO: Distances between consecutive points are 25 23 27 24 INFO: Selected control points in test subject's space are 43 69 32 51 65 35 52 57 37 49 51 28 42 54 24 INFO: Distances between consecutive points in test subject's space are 9 8 11 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498729 INFO: Points where local peeks in curvature occur are 53 119 100 (curv = 0.0848449) 54 100 104 (curv = 0.0786155) 53 82 92 (curv = 0.0664417) 47 80 79 (curv = 0.058139) INFO: Intermediate dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 INFO: Final dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 95 53 116 100 55 94 102 48 80 82 27 90 71 INFO: Distances between consecutive points are 24 22 25 26 INFO: Selected control points in test subject's space are 43 70 33 51 65 35 52 57 37 50 51 29 42 54 25 INFO: Distances between consecutive points in test subject's space are 10 8 10 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0455956 INFO: Points where local peeks in curvature occur are 53 125 100 (curv = 0.0826439) 56 102 104 (curv = 0.0610214) 48 85 95 (curv = 0.0912904) INFO: Intermediate dominant points are 34 140 103 53 125 100 56 102 104 48 85 95 28 79 69 INFO: Final dominant points are 34 140 103 53 125 100 56 102 104 48 85 95 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 103 54 122 101 55 98 103 46 83 86 28 79 69 INFO: Distances between consecutive points are 27 24 24 25 INFO: Selected control points in test subject's space are 44 74 36 52 67 36 52 58 37 49 52 31 42 50 24 INFO: Distances between consecutive points in test subject's space are 11 9 9 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.050069 INFO: Points where local peeks in curvature occur are 52 121 99 (curv = 0.130207) 54 98 103 (curv = 0.0745749) 53 83 93 (curv = 0.0644416) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 INFO: Final dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 99 54 96 103 49 80 84 28 90 70 INFO: Distances between consecutive points are 25 22 25 27 INFO: Selected control points in test subject's space are 43 69 32 51 66 35 52 58 37 50 51 30 42 54 24 INFO: Distances between consecutive points in test subject's space are 9 8 10 10 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 43 71 35 51 65 36 53 56 37 51 51 31 44 50 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0494735 INFO: Points where local peeks in curvature occur are 51 121 99 (curv = 0.117745) 54 96 103 (curv = 0.0688114) 53 82 93 (curv = 0.0766333) 49 80 85 (curv = 0.0605107) INFO: Intermediate dominant points are 31 128 93 51 121 99 54 96 103 53 82 93 28 90 71 INFO: Final dominant points are 31 128 93 51 121 99 54 96 103 53 82 93 28 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 100 54 95 103 48 80 83 28 90 71 INFO: Distances between consecutive points are 25 23 26 25 INFO: Selected control points in test subject's space are 43 69 32 51 66 35 52 57 37 50 51 30 42 54 25 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0496574 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0730799) 55 105 104 (curv = 0.0666535) 55 100 103 (curv = 0.0598027) 48 86 95 (curv = 0.0983926) 42 84 75 (curv = 0.079932) INFO: Intermediate dominant points are 33 141 103 55 119 101 54 97 102 48 86 95 27 79 69 INFO: Final dominant points are 33 141 103 55 119 101 54 97 102 48 86 95 27 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 122 100 54 98 102 46 84 85 27 79 69 INFO: Distances between consecutive points are 28 24 23 25 INFO: Selected control points in test subject's space are 43 74 36 52 67 35 52 58 36 49 52 30 42 50 24 INFO: Distances between consecutive points in test subject's space are 11 9 9 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0503332 INFO: Points where local peeks in curvature occur are 51 121 99 (curv = 0.0862622) 54 105 103 (curv = 0.0630755) 54 95 103 (curv = 0.0709973) 50 80 87 (curv = 0.0628879) 39 86 71 (curv = 0.0858641) INFO: Intermediate dominant points are 31 128 93 51 121 99 54 95 103 50 80 87 28 90 70 INFO: Final dominant points are 31 128 93 51 121 99 54 95 103 50 80 87 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 116 100 54 94 102 47 80 80 28 90 70 INFO: Distances between consecutive points are 26 22 27 24 INFO: Selected control points in test subject's space are 43 69 32 51 65 35 52 57 37 49 51 28 42 54 24 INFO: Distances between consecutive points in test subject's space are 9 8 11 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0462433 INFO: Points where local peeks in curvature occur are 52 124 101 (curv = 0.0544212) 56 116 102 (curv = 0.0529512) 56 108 104 (curv = 0.0510991) 55 100 103 (curv = 0.0580403) 48 84 93 (curv = 0.113251) 43 83 77 (curv = 0.051309) INFO: Intermediate dominant points are 33 140 103 52 124 101 55 100 103 48 84 93 28 79 69 INFO: Final dominant points are 33 140 103 52 124 101 55 100 103 48 84 93 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 140 103 55 119 101 54 96 102 46 83 83 28 79 69 INFO: Distances between consecutive points are 30 23 24 23 INFO: Selected control points in test subject's space are 43 74 36 52 66 36 52 58 37 49 52 29 42 50 24 INFO: Distances between consecutive points in test subject's space are 12 8 10 9 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0456406 INFO: Points where local peeks in curvature occur are 53 124 101 (curv = 0.0749588) 56 106 104 (curv = 0.0689621) 48 85 95 (curv = 0.0952838) INFO: Intermediate dominant points are 34 140 103 53 124 101 56 106 104 48 85 95 29 79 69 INFO: Final dominant points are 34 140 103 53 124 101 56 106 104 48 85 95 29 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 103 54 120 101 55 98 103 46 83 85 29 79 69 INFO: Distances between consecutive points are 28 22 25 24 INFO: Selected control points in test subject's space are 44 74 36 52 67 36 52 58 37 49 52 30 42 50 24 INFO: Distances between consecutive points in test subject's space are 11 9 10 9 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0473223 INFO: Points where local peeks in curvature occur are 53 122 100 (curv = 0.0694675) 55 106 104 (curv = 0.0589905) 55 101 103 (curv = 0.0522884) 48 85 96 (curv = 0.121529) 42 83 75 (curv = 0.0750056) INFO: Intermediate dominant points are 32 142 103 53 122 100 55 106 104 48 85 96 28 79 69 INFO: Final dominant points are 32 142 103 53 122 100 55 106 104 48 85 96 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 142 103 54 121 100 54 98 103 46 83 85 28 79 69 INFO: Distances between consecutive points are 31 23 25 24 INFO: Selected control points in test subject's space are 43 75 36 52 67 35 52 58 37 49 52 30 42 50 24 INFO: Distances between consecutive points in test subject's space are 12 9 10 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.047638 INFO: Points where local peeks in curvature occur are 53 123 100 (curv = 0.0591739) 56 105 104 (curv = 0.0788528) 47 84 92 (curv = 0.105179) INFO: Intermediate dominant points are 33 141 103 53 123 100 56 105 104 47 84 92 28 79 69 INFO: Final dominant points are 33 141 103 53 123 100 56 105 104 47 84 92 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 121 101 55 98 102 46 84 84 28 79 69 INFO: Distances between consecutive points are 29 23 25 24 INFO: Selected control points in test subject's space are 43 74 36 52 67 36 52 58 36 49 52 30 42 50 24 INFO: Distances between consecutive points in test subject's space are 11 9 9 9 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0569891 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.0825601) 52 115 102 (curv = 0.0819523) 56 95 104 (curv = 0.0771318) 55 89 102 (curv = 0.0667286) 53 82 95 (curv = 0.0895094) INFO: Intermediate dominant points are 33 129 101 51 118 101 53 82 95 50 82 84 34 77 77 INFO: Final dominant points are 33 129 101 51 118 101 53 82 95 43 83 73 34 77 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 50 82 85 34 77 77 INFO: Distances between consecutive points are 25 22 21 19 INFO: Selected control points in test subject's space are 43 70 35 51 64 36 53 56 37 50 52 30 44 49 27 INFO: Distances between consecutive points in test subject's space are 10 8 9 7 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0525215 INFO: Points where local peeks in curvature occur are 50 121 99 (curv = 0.0879324) 54 99 104 (curv = 0.0865024) 53 82 92 (curv = 0.0741171) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 INFO: Final dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 94 102 48 80 83 28 90 70 INFO: Distances between consecutive points are 23 21 24 26 INFO: Selected control points in test subject's space are 44 69 33 51 65 35 52 57 37 50 51 30 42 54 24 INFO: Distances between consecutive points in test subject's space are 8 8 9 10 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0470386 INFO: Points where local peeks in curvature occur are 53 123 100 (curv = 0.0594624) 56 104 104 (curv = 0.080534) 55 97 102 (curv = 0.0486378) 48 86 95 (curv = 0.104467) INFO: Intermediate dominant points are 33 141 103 56 104 104 48 86 95 45 84 83 27 79 69 INFO: Final dominant points are 33 141 103 56 104 104 48 86 95 39 84 72 27 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 121 100 54 96 102 45 84 83 27 79 69 INFO: Distances between consecutive points are 29 25 24 23 INFO: Selected control points in test subject's space are 43 74 36 52 67 35 52 58 37 49 52 29 42 50 24 INFO: Distances between consecutive points in test subject's space are 11 9 10 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0490509 INFO: Points where local peeks in curvature occur are 55 121 103 (curv = 0.0716713) 57 114 103 (curv = 0.0761282) 56 107 105 (curv = 0.0786728) 55 96 103 (curv = 0.0542562) 48 84 95 (curv = 0.118268) INFO: Intermediate dominant points are 36 136 104 55 121 103 56 107 105 48 84 95 29 78 70 INFO: Final dominant points are 36 136 104 55 121 103 56 107 105 48 84 95 29 78 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 104 56 119 103 55 97 103 46 82 86 29 78 70 INFO: Distances between consecutive points are 26 22 24 24 INFO: Selected control points in test subject's space are 45 73 36 52 66 36 52 58 37 49 52 31 42 49 25 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 43 70 35 51 64 36 53 56 37 51 51 30 44 48 27 INFO: Distances between consecutive points in test subject's space are 10 8 9 8 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 43 69 35 51 65 36 53 56 37 51 51 31 44 50 26 INFO: Distances between consecutive points in test subject's space are 9 9 8 9 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 43 70 35 52 64 36 53 56 37 51 51 30 44 49 26 INFO: Distances between consecutive points in test subject's space are 11 8 9 8 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 43 71 35 51 65 36 53 56 37 51 51 30 44 50 26 INFO: Distances between consecutive points in test subject's space are 10 9 9 8 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 44 69 33 51 65 35 52 57 37 50 51 30 43 54 24 INFO: Distances between consecutive points in test subject's space are 8 8 9 10 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 43 69 35 51 65 36 53 57 37 52 51 31 44 50 26 INFO: Distances between consecutive points in test subject's space are 9 8 9 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0511504 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0883091) 57 95 104 (curv = 0.0762743) 55 85 101 (curv = 0.077328) 52 80 83 (curv = 0.0726445) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 83 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 52 80 86 34 78 74 INFO: Distances between consecutive points are 24 23 23 22 INFO: Selected control points in test subject's space are 43 69 35 51 65 36 53 57 37 51 51 31 44 50 26 INFO: Distances between consecutive points in test subject's space are 9 8 9 9 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543301 INFO: Points where local peeks in curvature occur are 51 117 101 (curv = 0.0925797) 56 96 104 (curv = 0.0835785) 55 88 102 (curv = 0.0685132) 52 82 95 (curv = 0.0938857) INFO: Intermediate dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 INFO: Final dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 128 101 52 115 102 56 93 103 50 82 85 34 78 75 INFO: Distances between consecutive points are 22 22 22 19 INFO: Selected control points in test subject's space are 44 69 35 51 65 36 53 56 37 50 52 30 44 50 26 INFO: Distances between consecutive points in test subject's space are 8 9 9 7 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0545286 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.0996838) 56 97 104 (curv = 0.0731049) 54 84 98 (curv = 0.0976728) INFO: Intermediate dominant points are 31 128 99 54 114 102 54 84 98 51 82 86 34 79 74 INFO: Final dominant points are 31 128 99 54 114 102 54 84 98 46 83 75 34 79 74 INFO: Selected control points are 31 128 99 54 114 102 55 84 99 46 83 75 34 79 74 INFO: Distances between consecutive points are 27 30 26 13 INFO: Selected control points in test subject's space are 43 69 35 52 64 36 52 53 36 49 52 26 44 50 26 INFO: Distances between consecutive points in test subject's space are 10 11 10 5 Writing output files to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /fastfs/igis/MRI_fs_rec_dti/64-10-069-1_T1/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 44.144 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Tue Apr 9 23:13:56 CEST 2013 ================================================================================ AUXILIARY JOB INFORMATION FOLLOWS ================================================================================ === Memory usage === Memory usage data is not available for this job. === Energy consumption === Energy consumption data is not available for this job.