On Tue, Jul 10, 2012 at 5:09 PM, Michael Waskom <mwaskom@stanford.edu> wrote:

Hi,

I'm using mri_label2label to reverse normalize labels from fsaverage
space to the native surface.

I'm ending up with some splotchy-looking labels, for lack of a better
word. See what I mean here:
http://web.mit.edu/mwaskom/www/splotchy.png

I'm doing this normalization in a script with the following relevant
line, which seems to be what happens inthe BAlabes step of recon-all

mri_label2label --srclabel ../fsaverage/label/${hemi}.${roi}.label \
--srcsubject fsaverage --trgsubject ${subj} \
--trglabel label/$hemi.${roi}.label \
--regmethod surface --hemi $hemi

Any idea how I can avoid this splotchiness or, failing that, do a
closing on the label to clean up some of the noise?

Cheers,
Michael