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Hello,

I am running recon-all on my data using freesurfer 6.0 which is working correctly. However, I need to create some VOIs which labels are only outputted from the aparc2005 set and do not appear in  the aparc2009 set; specifically:

9001, 9501           ctx-lh-primary-motor, ctx-rh-primary-motor

9005, 9505           ctx-lh-prim-sec-somatosensory, ctx-rh- prim-sec-somatosensory

9002, 9502           ctx-lh-premotor, ctx-rh-premotor

9004, 9504           ctx-lh-posterior-parietal, ctx-rh-posterior-parietal


Is there a flag or some other option to output the 2005 set in addition to the 2009?


Thank you for your help,


Erica Grodin


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Erica Grodin, Ph.D.
Postdoctoral Fellow
University of California, Dept. of Psychology and Psychiatry