Dr. Rakshathi,

To help us to get a better picture, can you send the full recon-all.log?

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Rakshathi Basavaraju
Sent: Friday, January 27, 2023 5:41 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] What if FS fails

        External Email - Use Caution        

What is to be done if we get such an error message for recon-all: (copied from recon-allstatus log)

status file for recon-all
Tue Jan  3 22:43:36 IST 2023
#@# MotionCor Tue Jan  3 22:43:41 IST 2023
#@# Talairach Tue Jan  3 22:43:53 IST 2023
#@# Talairach Failure Detection Tue Jan  3 22:47:14 IST 2023
#@# Talairach Tue Jan  3 22:47:15 IST 2023
#@# Talairach Failure Detection Tue Jan  3 22:50:31 IST 2023
#@# Talairach Tue Jan  3 22:50:32 IST 2023
#@# Talairach Failure Detection Tue Jan  3 22:53:29 IST 2023
Darwin JAGADISHAs-Mac-mini.local 21.2.0 Darwin Kernel Version 21.2.0: Sun Nov 28 20:29:10 PST 2021; root:xnu-8019.61.5~1/RELEASE_ARM64_T8101 x86_64

recon-all -s subj39_anat exited with ERRORS at Tue Jan  3 22:53:30 IST 2023

Dr. Rakshathi Basavaraju (M.D. Psychiatry)

Assistant Professor (Department of Health Research-sponsored return-home research fellowship)

Principal Investigator - OPCINSS 

Department of Psychiatry

National Institute of Mental Health and Neurosciences (NIMHANS)

Bengaluru, Karnataka, India-560029

Phone: +91-9480829898/+91-80-26972156/+91-80-26995320