I am having a weird problem with freeview… When l load some volumes and some surfaces together, I can’t see the surfaces because they are hidden ‘behind’ the volumes. They normally sit on top, but now I can only see them
if I toggle off the volumes – which is not useful as I need both at once.
They are definitely in alignment as I can see them when I toggle, and when I look at old data that I know I could view properly (and surfaces-volumes are in alignment) I have the same issue. I can't move them up, as you
can only move position within volumes and surfaces. I tried to attach a video but my email got bounced for being too large - happy to send directly if it is helpful
I am using the below code to load things (though have also manually loaded stuff in freeview). The code has not changed since it worked in the past…
I have tried searching the freesurfer help, but can’t find anything on my issue… Any help would be appreciated
Thanks!
Harriet
p.s., I am using freesurfer/ freeview on a remote machine of my university. They inform me no updates have been performed
CODE
freeview -v mri/T1.mgz \
mri/brainmask.mgz \
mri/wm.mgz:visible=0 \
-f surf/lh.smoothwm:edgecolor=yellow \
surf/lh.pial:edgecolor=red \
-viewport cor -layout 1