Tue Apr 16 13:10:28 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -i /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_work/fmriprep_23_2_wf/sub_01_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-01_run-01_T1w_noise_corrected_template.nii.gz -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 20Gi 178Mi 183Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:28-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:29-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:30-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-10:10:31-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 mri_convert /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_work/fmriprep_23_2_wf/sub_01_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-01_run-01_T1w_noise_corrected_template.nii.gz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig/001.mgz mri_convert /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_work/fmriprep_23_2_wf/sub_01_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-01_run-01_T1w_noise_corrected_template.nii.gz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig/001.mgz reading from /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_work/fmriprep_23_2_wf/sub_01_wf/anat_fit_wf/anat_template_wf/anat_merge/sub-01_run-01_T1w_noise_corrected_template.nii.gz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.999994, -0.0031588, 0.00166023) j_ras = (0.0031588, 0.999995, -4.29909e-10) k_ras = (-0.00166022, 5.24477e-06, 0.999999) writing to /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Tue Apr 16 13:10:33 IDT 2024 Found 1 runs /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig/001.mgz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz mri_info /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz rawavg.mgz ======================================== Volume information for /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz type: MGH dimensions: 192 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: FLOAT (3) fov: 256.000 dof: 1 xstart: -96.0, xend: 96.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 0.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = 1.0000, y_r = 0.0032, z_r = -0.0017, c_r = -1.3449 : x_a = -0.0032, y_a = 1.0000, z_a = 0.0000, c_a = -8.1277 : x_s = 0.0017, y_s = -0.0000, z_s = 1.0000, c_s = 3.8501 talairach xfm : Orientation : RAS Primary Slice Direction: axial voxel to ras transform: 1.0000 0.0032 -0.0017 -97.5361 -0.0032 1.0000 0.0000 -135.8245 0.0017 -0.0000 1.0000 -124.3091 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant 1 ras to voxel transform: 1.0000 -0.0032 0.0017 97.3128 0.0032 1.0000 -0.0000 136.1320 -0.0017 0.0000 1.0000 124.1478 0.0000 0.0000 0.0000 1.0000 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 mri_convert /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz --conform mri_convert /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz --conform reading from /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0.999994, -0.0031588, 0.00166023) j_ras = (0.0031588, 0.999995, -4.29909e-10) k_ras = (-0.00166022, 5.24477e-06, 0.999999) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram -0.344391 11.6101 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz... mri_add_xform_to_header -c /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talairach.xfm /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz INFO: extension is mgz mri_info /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz orig.mgz ======================================== Volume information for /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/orig.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 1 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 0.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = -0.0000, z_r = 0.0000, c_r = -1.3449 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = -8.1277 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = 3.8501 talairach xfm : /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 -0.0000 0.0000 126.6552 0.0000 0.0000 1.0000 -136.1277 0.0000 -1.0000 0.0000 131.8501 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 0.0000 0.0000 126.6551 -0.0000 -0.0000 -1.0000 131.8501 0.0000 1.0000 -0.0000 136.1277 -0.0000 -0.0000 -0.0000 1.0000 #-------------------------------------------- #@# Talairach Tue Apr 16 13:10:40 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri /opt/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n4 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.3.2 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux Tue Apr 16 13:10:40 IDT 2024 tmpdir is ./tmp.mri_nu_correct.mni.1019799 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1019799/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_convert ./tmp.mri_nu_correct.mni.1019799/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.1019799/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.1019799/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 9.27454e-11, 0) j_ras = (-1.16415e-10, 0, -1) k_ras = (1.40085e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to orig_nu.mgz... Tue Apr 16 13:13:13 IDT 2024 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... mv -f /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talsrcimg_to_711-2C_as_mni_average_305_t4_vox2vox.txt Started at Tue Apr 16 13:13:13 IDT 2024 Ended at Tue Apr 16 13:13:33 IDT 2024 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /opt/freesurfer/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.3.2 --src: orig.mgz src image (geometry). --trg: /opt/freesurfer/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Tue Apr 16 13:13:35 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.0878, pval=0.0051 >= threshold=0.0050) awk -f /opt/freesurfer/bin/extract_talairach_avi_QA.awk /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talairach_avi.log tal_QC_AZS /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talairach_avi.log TalAviQA: 0.96842 z-score: -2 #-------------------------------------------- #@# Nu Intensity Correction Tue Apr 16 13:13:35 IDT 2024 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri /opt/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.3.2 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux Tue Apr 16 13:13:35 IDT 2024 tmpdir is ./tmp.mri_nu_correct.mni.1020177 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o ./tmp.mri_nu_correct.mni.1020177/nu0.mgz --dtype uchar AntsN4BiasFieldCorrectionFs done mri_binarize --i ./tmp.mri_nu_correct.mni.1020177/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1020177/ones.mgz 7.3.2 cwd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.1020177/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.1020177/ones.mgz sysname Linux hostname benyakov-a.elsc.huji.ac.il machine x86_64 user shahar.bennoun input ./tmp.mri_nu_correct.mni.1020177/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.1020177/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.1020177/ones.mgz Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1020177/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1020177/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1020177/input.mean.dat 7.3.2 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1020177/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.1020177/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1020177/input.mean.dat sysname Linux hostname benyakov-a.elsc.huji.ac.il machine x86_64 user shahar.bennoun whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1020177/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1020177/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1020177/ones.mgz --i ./tmp.mri_nu_correct.mni.1020177/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1020177/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1020177/output.mean.dat 7.3.2 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.1020177/ones.mgz --i ./tmp.mri_nu_correct.mni.1020177/nu0.mgz --sum ./tmp.mri_nu_correct.mni.1020177/sum.junk --avgwf ./tmp.mri_nu_correct.mni.1020177/output.mean.dat sysname Linux hostname benyakov-a.elsc.huji.ac.il machine x86_64 user shahar.bennoun whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.1020177/ones.mgz Loading ./tmp.mri_nu_correct.mni.1020177/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame Writing to ./tmp.mri_nu_correct.mni.1020177/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.1020177/nu0.mgz ./tmp.mri_nu_correct.mni.1020177/nu0.mgz mul 2.19575810498510115396 Saving result to './tmp.mri_nu_correct.mni.1020177/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.1020177/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.1020177/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.1020177/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 9.27454e-11, 0) j_ras = (-1.16415e-10, 0, -1) k_ras = (1.40085e-10, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 4 seconds. FIRST_PERCENTILE 0.010000 WM_PERCENTILE 0.900000 MAX_R 50.000000 i1 = 41, i2 = 77 #mri_make_uchar# mapping 87 163 to 3 110 : b -119.824 m 1.41382 : thresh 84.7519 maxsat 265.115 : nzero 15324203 nsat 252 Tue Apr 16 13:16:23 IDT 2024 mri_nu_correct.mni done mri_add_xform_to_header -c /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 13:16:23 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 13:16:27 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 16:11:25 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:25-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:26-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:11:27-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 16:11:27 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 16:11:32 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 16:18:52 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:52-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:53-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:54-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:18:55-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 16:18:55 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 16:18:59 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 16:34:36 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC 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freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:34:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 16:34:38 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 16:34:43 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 16:38:42 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:42-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:43-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:38:44-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 16:38:44 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 16:38:49 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 16:45:38 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:39-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:40-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:41-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-13:45:41-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 16:45:41 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 16:45:45 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 17:05:47 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 22Gi 177Mi 180Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:47-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:48-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC 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freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:49-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:50-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:50-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:05:50-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 17:05:50 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 17:05:54 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting #New# invocation of recon-all Tue Apr 16 17:23:36 IDT 2024 cd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer /opt/freesurfer/bin/recon-all -autorecon1 -noskullstrip -noT2pial -noFLAIRpial -openmp 8 -subjid sub-01 -sd /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer -nomotioncor -notalairach -nonuintensitycor subjid sub-01 setenv SUBJECTS_DIR /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 1028977 maxlocks unlimited maxsignal 1028977 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 251Gi 47Gi 23Gi 178Mi 181Gi 201Gi Swap: 15Gi 12Gi 3.3Gi ######################################## program versions used 7.3.2 (freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275) 7.3.2 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:36-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 7.3.2 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:37-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 mri_motion_correct.fsl 7.3.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.3.2 TimeStamp: 2024/04/16-14:23:38-GMT BuildTime: Aug 4 2022 06:17:15 BuildStamp: freesurfer-linux-ubuntu22_x86_64-7.3.2-20220804-6354275 User: shahar.bennoun Machine: benyakov-a.elsc.huji.ac.il Platform: Linux PlatformVersion: 5.4.0-159-generic CompilerName: GCC CompilerVersion: 8.4.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Intensity Normalization Tue Apr 16 17:23:38 IDT 2024 /ems/elsc-labs/benyakov-a/Lab-Shared/fmriprep_output/sourcedata/freesurfer/sub-01/mri mri_normalize -g 1 -seed 1234 -mprage nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 0.95387 -0.26417 0.37739 63.11058; 0.47452 1.26412 -0.24242 -119.31696; -0.07407 0.04213 1.27537 132.14726; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 8 Starting OpenSpline(): npoints = 8 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 error: No such file or directory error: MRInormFindControlPoints: could not find enough control points error: No such file or directory error: MRInormFindControlPoints failed Linux benyakov-a.elsc.huji.ac.il 5.4.0-159-generic #176-Ubuntu SMP Mon Aug 14 12:04:20 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux recon-all -s sub-01 exited with ERRORS at Tue Apr 16 17:23:43 IDT 2024 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting