if you run
mri_convert 00010001 deleteme.nii
what happens?

what is the error when running with nifti?

On 03/14/2016 05:59 PM, Jasmin Alves wrote:
>
> Dear Freesurfer experts,
>
> FREESURFER_HOME: /Applications/freesurfer
>
> Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
>
> Kernel info: Darwin 14.5.0 x86_64
>
>
> I received the following error while running the dt_recon --i 00010001
> --s 40 --o /Users/jasminalves/Desktop/data/FREESURFER/40.
>
> The participant is 40.
>
> And I received the following error:
>
> WARNING: file /Users/jasminalves/Desktop/data/40/00010001 does not
> contain a Siemens ASCII header has this file been anonymized?
>
> ERROR: cannot unpack mosiacs without ASCII header
>
>
> I did notice on previous threads this is a common error that occurs,
> but the files I have were directly exported from our siemens scanner
> via Osirix. I also tried running dt_recon using nifti format but that
> resulted in an error as well. Is there anything else I can do?
>
> Thanks,
>
> Jasmin
>
>
> --
> Jasmin Alves
> Predoctoral Student
> Medical Biology Graduate Program
> University of Southern California

> jalves@usc.edu <mailto:jalves@usc.edu>
>
>
>
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