Sun Apr 17 23:16:49 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn /usr/local/pkg/freesurfer7.2/bin/recon-all -s MOD1707_Y2_a_fs7p2 -i /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a/MOD1707_Y2_a_T1w_gdc_dc_reorient_dn.nii.gz -hires -all subjid MOD1707_Y2_a_fs7p2 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Actual FREESURFER_HOME /usr/local/pkg/freesurfer7.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 16384 kbytes maxproc 3090478 maxlocks unlimited maxsignal 3090478 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 754G 11G 48G 5.9M 694G 738G Swap: 38G 30M 38G ######################################## program versions used 7.2.0 (freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b) 7.2.0 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 7.2.0 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:49-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 mri_motion_correct.fsl 7.2.0 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.2.0 TimeStamp: 2022/04/18-04:16:50-GMT BuildTime: Jul 20 2021 18:45:50 BuildStamp: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b User: dustj Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 4.8.5 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /usr/local/pkg/freesurfer7.2/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/pkg/freesurfer7.2/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2 mri_convert /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a/MOD1707_Y2_a_T1w_gdc_dc_reorient_dn.nii.gz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig/001.mgz mri_convert /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a/MOD1707_Y2_a_T1w_gdc_dc_reorient_dn.nii.gz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig/001.mgz INFO: using NIfTI-1 qform reading from /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a/MOD1707_Y2_a_T1w_gdc_dc_reorient_dn.nii.gz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig/001.mgz... @#@FSTIME 2022:04:17:23:16:50 mri_convert N 2 e 7.11 S 0.18 U 4.43 P 65% M 86148 F 0 R 28146 W 0 c 9 w 2668 I 134184 O 134064 L 4.14 1.17 0.48 @#@FSLOADPOST 2022:04:17:23:16:57 mri_convert N 2 5.01 1.40 0.56 #-------------------------------------------- #@# MotionCor Sun Apr 17 23:16:59 CDT 2022 Found 1 runs /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... Only one run found so motion correction will not be performed. I'll copy the run to rawavg and continue. cp /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig/001.mgz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2 mri_convert /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz --conform_min mri_convert /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz --conform_min reading from /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (1, 0, 0) j_ras = (0, 1, 0) k_ras = (0, 0, 1) changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram -0.0052948 4575.34 1000, flo=0, fhi=0.999, dest_type=0 Reslicing using trilinear interpolation writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz... @#@FSTIME 2022:04:17:23:17:04 mri_convert N 3 e 6.43 S 0.17 U 5.99 P 95% M 106120 F 0 R 60974 W 0 c 11 w 231 I 0 O 17232 L 7.24 2.00 0.76 @#@FSLOADPOST 2022:04:17:23:17:11 mri_convert N 3 8.34 2.31 0.87 mri_add_xform_to_header -c /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/talairach.xfm /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2022:04:17:23:17:11 mri_add_xform_to_header N 4 e 2.26 S 0.03 U 1.53 P 69% M 39328 F 0 R 8555 W 0 c 2 w 311 I 0 O 17232 L 8.34 2.31 0.87 @#@FSLOADPOST 2022:04:17:23:17:13 mri_add_xform_to_header N 4 9.52 2.66 0.99 #-------------------------------------------- #@# Talairach Sun Apr 17 23:17:14 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n3 --n 1 --proto-iters 1000 --distance 50 /usr/bin/bc /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri /usr/local/pkg/freesurfer7.2/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --ants-n3 --n 1 --proto-iters 1000 --distance 50 nIters 1 mri_nu_correct.mni 7.2.0 Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux Sun Apr 17 23:17:15 CDT 2022 tmpdir is ./tmp.mri_nu_correct.mni.72948 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri /opt/ANTs/bin/N3BiasFieldCorrection 3 orig.mgz ./tmp.mri_nu_correct.mni.72948/nu0.mgz mri_convert ./tmp.mri_nu_correct.mni.72948/nu0.mgz orig_nu.mgz --like orig.mgz --conform mri_convert ./tmp.mri_nu_correct.mni.72948/nu0.mgz orig_nu.mgz --like orig.mgz --conform reading from ./tmp.mri_nu_correct.mni.72948/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 319.191 1000, flo=0, fhi=0.999, dest_type=0 writing to orig_nu.mgz... Mon Apr 18 00:09:51 CDT 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:17:23:17:15 mri_nu_correct.mni N 12 e 3156.40 S 23.34 U 3132.44 P 99% M 1419876 F 0 R 17360056 W 0 c 1640 w 2170 I 0 O 146000 L 9.52 2.66 0.99 @#@FSLOADPOST 2022:04:18:00:09:51 mri_nu_correct.mni N 12 25.47 25.24 24.43 talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Mon Apr 18 00:09:51 CDT 2022 Ended at Mon Apr 18 00:10:24 CDT 2022 talairach_avi done @#@FSTIME 2022:04:18:00:09:51 talairach_avi N 4 e 32.69 S 1.81 U 21.94 P 72% M 574408 F 0 R 640550 W 0 c 38 w 10112 I 0 O 577104 L 25.47 25.24 24.43 @#@FSLOADPOST 2022:04:18:00:10:24 talairach_avi N 4 25.35 25.23 24.45 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /usr/local/pkg/freesurfer7.2/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.2.0 --src: orig.mgz src image (geometry). --trg: /usr/local/pkg/freesurfer7.2/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.13955 0.02862 -0.01082 -0.17511; -0.01928 1.15170 0.05149 -17.47934; -0.00906 0.04061 1.17473 15.57368; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Mon Apr 18 00:10:26 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7282, pval=0.6675 >= threshold=0.0050) @#@FSTIME 2022:04:18:00:10:26 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 62% M 5900 F 0 R 207 W 0 c 0 w 13 I 0 O 0 L 25.32 25.23 24.46 @#@FSLOADPOST 2022:04:18:00:10:26 talairach_afd N 4 25.32 25.23 24.46 awk -f /usr/local/pkg/freesurfer7.2/bin/extract_talairach_avi_QA.awk /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/talairach_avi.log tal_QC_AZS /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/talairach_avi.log TalAviQA: 0.97744 z-score: 0 #-------------------------------------------- #@# Nu Intensity Correction Mon Apr 18 00:10:26 CDT 2022 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --cm --n 2 --ants-n3 /usr/bin/bc /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri /usr/local/pkg/freesurfer7.2/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --cm --n 2 --ants-n3 nIters 2 mri_nu_correct.mni 7.2.0 Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux Mon Apr 18 00:10:27 CDT 2022 tmpdir is ./tmp.mri_nu_correct.mni.13608 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri /opt/ANTs/bin/N3BiasFieldCorrection 3 orig.mgz ./tmp.mri_nu_correct.mni.13608/nu0.mgz mri_binarize --i ./tmp.mri_nu_correct.mni.13608/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.13608/ones.mgz 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.13608/nu0.mgz --min -1 --o ./tmp.mri_nu_correct.mni.13608/ones.mgz sysname Linux hostname hopper machine x86_64 user dustj input ./tmp.mri_nu_correct.mni.13608/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.13608/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 32768000 values in range Counting number of voxels in first frame Found 32767999 voxels in final mask Writing output to ./tmp.mri_nu_correct.mni.13608/ones.mgz Count: 32767999 16776964.331758 32768000 99.999997 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.13608/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.13608/sum.junk --avgwf ./tmp.mri_nu_correct.mni.13608/input.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.13608/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.13608/sum.junk --avgwf ./tmp.mri_nu_correct.mni.13608/input.mean.dat sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.13608/ones.mgz Loading orig.mgz Voxel Volume is 0.511992 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.13608/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.13608/ones.mgz --i ./tmp.mri_nu_correct.mni.13608/nu0.mgz --sum ./tmp.mri_nu_correct.mni.13608/sum.junk --avgwf ./tmp.mri_nu_correct.mni.13608/output.mean.dat 7.2.0 cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.13608/ones.mgz --i ./tmp.mri_nu_correct.mni.13608/nu0.mgz --sum ./tmp.mri_nu_correct.mni.13608/sum.junk --avgwf ./tmp.mri_nu_correct.mni.13608/output.mean.dat sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 Loading ./tmp.mri_nu_correct.mni.13608/ones.mgz Loading ./tmp.mri_nu_correct.mni.13608/nu0.mgz Voxel Volume is 0.511992 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.13608/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.13608/nu0.mgz ./tmp.mri_nu_correct.mni.13608/nu0.mgz mul 1.00111288727494764291 Saving result to './tmp.mri_nu_correct.mni.13608/nu0.mgz' (type = MGH ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.13608/nu0.mgz nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.13608/nu0.mgz nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.13608/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 11 seconds. mapping (53, 178) to ( 3, 110) Mon Apr 18 01:03:49 CDT 2022 mri_nu_correct.mni done @#@FSTIME 2022:04:18:00:10:26 mri_nu_correct.mni N 10 e 3202.77 S 26.20 U 3175.09 P 99% M 1419884 F 0 R 18083434 W 0 c 1419 w 4284 I 128456 O 396416 L 25.32 25.23 24.46 @#@FSLOADPOST 2022:04:18:01:03:49 mri_nu_correct.mni N 10 25.13 25.17 25.18 mri_add_xform_to_header -c /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2022:04:18:01:03:49 mri_add_xform_to_header N 4 e 0.87 S 0.01 U 0.81 P 95% M 39344 F 0 R 8556 W 0 c 3 w 141 I 0 O 8680 L 25.13 25.17 25.18 @#@FSLOADPOST 2022:04:18:01:03:50 mri_add_xform_to_header N 4 25.13 25.17 25.18 #-------------------------------------------- #@# Intensity Normalization Mon Apr 18 01:03:50 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_normalize -g 1 -seed 1234 -mprage -noconform nu.mgz T1.mgz using max gradient = 1.000 setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE not interpolating and embedding volume to be 256^3... reading mri_src from nu.mgz... normalizing image... NOT doing gentle normalization with control points/label talairach transform 1.13955 0.02862 -0.01082 -0.17511; -0.01928 1.15170 0.05149 -17.47934; -0.00906 0.04061 1.17473 15.57368; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 9 Starting OpenSpline(): npoints = 9 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 89 gm peak at 65 (65), valley at 38 (38) csf peak at 32, setting threshold to 54 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 64 (64), valley at 26 (26) csf peak at 32, setting threshold to 53 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 3 minutes and 15 seconds. @#@FSTIME 2022:04:18:01:03:50 mri_normalize N 8 e 195.62 S 2.12 U 193.45 P 99% M 1132448 F 0 R 513606 W 0 c 138 w 217 I 0 O 8416 L 25.13 25.17 25.18 @#@FSLOADPOST 2022:04:18:01:07:06 mri_normalize N 8 25.09 25.14 25.17 #-------------------------------------------- #@# Skull Stripping Mon Apr 18 01:07:06 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_em_register -skull nu.mgz /usr/local/pkg/freesurfer7.2/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/pkg/freesurfer7.2/average/RB_all_withskull_2020_01_02.gca'... GCAread took 0 minutes and 1 seconds. average std = 23.0 using min determinant for regularization = 52.8 0 singular and 9205 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.9 or > 556.0 total sample mean = 77.3 (1403 zeros) ************************************************ spacing=8, using 3292 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3292, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=9.0 skull bounding box = (78, 84, 59) --> (246, 319, 266) finding center of left hemi white matter using (134, 162, 163) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 108, using box (113,133,137) --> (154, 191,188) to find MRI wm before smoothing, mri peak at 106 robust fit to distribution - 106 +- 6.3 after smoothing, mri peak at 106, scaling input intensities by 1.019 scaling channel 0 by 1.01887 initial log_p = -4.774 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.603354 @ (-10.526, -10.526, -10.526) max log p = -4.501509 @ (15.789, -5.263, -5.263) max log p = -4.466703 @ (-7.895, -2.632, -2.632) max log p = -4.426675 @ (1.316, 1.316, 1.316) max log p = -4.425143 @ (-0.658, -0.658, -0.658) max log p = -4.413627 @ (2.303, -4.276, -1.645) max log p = -4.411528 @ (-0.164, -0.164, 0.493) max log p = -4.411528 @ (0.000, 0.000, 0.000) Found translation: (0.2, -22.2, -18.9): log p = -4.412 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.803, old_max_log_p =-4.412 (thresh=-4.4) 0.92000 0.00000 0.00000 -23.32995; 0.00000 0.91212 -0.12008 -17.04738; 0.00000 0.12008 0.91212 -56.27729; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 55 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.754, old_max_log_p =-3.803 (thresh=-3.8) 0.92000 0.00000 0.00000 -23.32995; 0.00000 0.98900 0.00000 -49.83282; 0.00000 -0.00000 0.92000 -36.64610; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 54 seconds. **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.754, old_max_log_p =-3.754 (thresh=-3.8) 0.92000 0.00000 0.00000 -23.32995; 0.00000 0.98900 0.00000 -49.83282; 0.00000 -0.00000 0.92000 -36.64610; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 1 minutes and 53 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.699, old_max_log_p =-3.754 (thresh=-3.8) 0.91950 -0.00212 -0.03004 -17.12216; 0.00000 1.00538 -0.06130 -40.00520; 0.03010 0.06465 0.91753 -53.21306; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 41 seconds. **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.693, old_max_log_p =-3.699 (thresh=-3.7) 0.91950 -0.00212 -0.03004 -17.12216; 0.00000 1.02423 -0.06245 -44.09259; 0.03010 0.06465 0.91753 -53.21306; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 43 seconds. **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.693, old_max_log_p =-3.693 (thresh=-3.7) 0.91950 -0.00212 -0.03004 -17.12216; 0.00000 1.02423 -0.06245 -44.09259; 0.03010 0.06465 0.91753 -53.21306; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 1 minutes and 43 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.686, old_max_log_p =-3.693 (thresh=-3.7) 0.91861 0.02455 -0.00893 -25.59805; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 24 seconds. **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.683, old_max_log_p =-3.686 (thresh=-3.7) 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3292 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; nsamples 3292 Quasinewton: input matrix 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.683 (old=-4.774) transform before final EM align: 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364986 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; nsamples 364986 Quasinewton: input matrix 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 012: -log(p) = 4.2 tol 0.000000 final transform: 0.92076 0.02461 -0.00895 -26.02554; -0.02244 1.02564 -0.05468 -41.95896; 0.00771 0.05636 0.92171 -48.65955; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... #VMPC# mri_em_register VmPeak 982588 FSRUNTIME@ mri_em_register 0.2502 hours 1 threads registration took 15 minutes and 1 seconds. @#@FSTIME 2022:04:18:01:07:06 mri_em_register N 4 e 900.71 S 7.09 U 893.62 P 100% M 801592 F 0 R 213635 W 0 c 456 w 28 I 0 O 32 L 25.09 25.14 25.17 @#@FSLOADPOST 2022:04:18:01:22:07 mri_em_register N 4 25.22 25.24 25.20 mri_watershed -T1 -brain_atlas /usr/local/pkg/freesurfer7.2/average/RB_all_withskull_2020_01_02.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz conforming input... updating LTA to account for conformation Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=134 y=138 z=138 r=73 first estimation of the main basin volume: 1695524 voxels Looking for seedpoints 2 found in the cerebellum 9 found in the rest of the brain global maximum in x=156, y=117, z=120, Imax=255 CSF=14, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=5176440225 voxels, voxel volume =1.000 = 5176440225 mmm3 = 5176440.320 cm3 done. PostAnalyze...Basin Prior 63 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=130,y=137, z=124, r=8747 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = 44190 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = 2880 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=5 , nb = 2484 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=13 , nb = 20664 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 17460 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=30 , nb = 702 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 5, 9, 42, 62 after analyzing : 5, 31, 42, 38 RIGHT_CER before analyzing : 5, 9, 42, 63 after analyzing : 5, 31, 42, 39 LEFT_CER before analyzing : 5, 10, 45, 64 after analyzing : 5, 33, 45, 40 RIGHT_BRAIN before analyzing : 13, 25, 43, 59 after analyzing : 13, 37, 43, 42 LEFT_BRAIN before analyzing : 4, 7, 43, 62 after analyzing : 4, 31, 43, 38 OTHER before analyzing : 30, 30, 31, 66 after analyzing : 17, 30, 31, 39 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...58 iterations *********************VALIDATION********************* curvature mean = -0.014, std = 0.009 curvature mean = 67.104, std = 5.660 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 7.15, sigma = 11.03 after rotation: sse = 7.15, sigma = 11.03 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 7.95, its var is 9.43 before Erosion-Dilatation 5.71% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...33 iterations mri_strip_skull: done peeling brain Brain Size = 1405685 voxels, voxel volume = 1.000 mm3 = 1405685 mmm3 = 1405.685 cm3 INFO: MRImask() using MRImaskDifferentGeometry() ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 21.129161 mri_watershed stimesec 0.420023 mri_watershed ru_maxrss 796812 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 217842 mri_watershed ru_majflt 0 mri_watershed ru_nswap 0 mri_watershed ru_inblock 8416 mri_watershed ru_oublock 4232 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 140 mri_watershed ru_nivcsw 21 mri_watershed done @#@FSTIME 2022:04:18:01:22:07 mri_watershed N 6 e 21.64 S 0.45 U 21.12 P 99% M 797140 F 0 R 217842 W 0 c 21 w 142 I 8416 O 4232 L 25.22 25.24 25.20 @#@FSLOADPOST 2022:04:18:01:22:28 mri_watershed N 6 25.22 25.24 25.20 cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Mon Apr 18 01:22:29 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca'... GCAread took 0 minutes and 1 seconds. average std = 7.2 using min determinant for regularization = 5.2 0 singular and 884 ill-conditioned covariance matrices regularized reading 'nu.mgz'... MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 5.9 or > 519.0 total sample mean = 79.1 (1017 zeros) ************************************************ spacing=8, using 2841 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2841, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=25.0 skull bounding box = (80, 100, 67) --> (241, 254, 254) finding center of left hemi white matter using (134, 151, 161) as brain centroid of Right_Cerebral_White_Matter... MRImask(): AllowDiffGeom = 1 mean wm in atlas = 107, using box (114,132,138) --> (153, 169,184) to find MRI wm before smoothing, mri peak at 106 robust fit to distribution - 106 +- 4.8 after smoothing, mri peak at 106, scaling input intensities by 1.009 scaling channel 0 by 1.00943 initial log_p = -4.417 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.167013 @ (-10.526, -10.526, -10.526) max log p = -4.107482 @ (5.263, 5.263, -5.263) max log p = -4.076026 @ (-2.632, -7.895, 2.632) max log p = -4.057973 @ (1.316, -1.316, -9.211) max log p = -4.045025 @ (-0.658, 0.658, 1.974) max log p = -4.045025 @ (0.000, 0.000, 0.000) max log p = -4.044005 @ (-0.164, -0.822, -1.480) max log p = -4.044005 @ (0.000, 0.000, 0.000) Found translation: (-7.4, -14.6, -21.9): log p = -4.044 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.511, old_max_log_p =-4.044 (thresh=-4.0) 0.91947 -0.00614 -0.03053 -14.77520; 0.00212 0.97994 -0.13349 -28.03696; 0.02875 0.11473 0.84274 -51.57496; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 44 seconds. **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.476, old_max_log_p =-3.511 (thresh=-3.5) 0.91947 -0.00614 -0.03053 -14.77520; 0.00585 0.98654 -0.02234 -43.01226; 0.03034 -0.01522 0.91692 -38.74757; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 43 seconds. **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.476, old_max_log_p =-3.476 (thresh=-3.5) 0.91947 -0.00614 -0.03053 -14.77520; 0.00585 0.98654 -0.02234 -43.01226; 0.03034 -0.01522 0.91692 -38.74757; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 iteration took 1 minutes and 40 seconds. **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.366, old_max_log_p =-3.476 (thresh=-3.5) 0.90223 -0.00603 -0.02996 -13.39217; 0.00489 0.98649 -0.05121 -39.39882; 0.02938 0.01764 0.88133 -36.67358; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 30 seconds. **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.366, old_max_log_p =-3.366 (thresh=-3.4) 0.90223 -0.00603 -0.02996 -13.39217; 0.00489 0.98649 -0.05121 -39.39882; 0.02938 0.01764 0.88133 -36.67358; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 iteration took 1 minutes and 32 seconds. **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.336, old_max_log_p =-3.366 (thresh=-3.4) 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; iteration took 1 minutes and 13 seconds. **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.336, old_max_log_p =-3.336 (thresh=-3.3) 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2841 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; nsamples 2841 Quasinewton: input matrix 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010 Resulting transform: 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.336 (old=-4.417) transform before final EM align: 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315638 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; nsamples 315638 Quasinewton: input matrix 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 6 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = 3.8 tol 0.000000 final transform: 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... #VMPC# mri_em_register VmPeak 970036 FSRUNTIME@ mri_em_register 0.1957 hours 1 threads registration took 11 minutes and 44 seconds. @#@FSTIME 2022:04:18:01:22:30 mri_em_register N 7 e 704.42 S 5.57 U 698.82 P 99% M 789324 F 0 R 217580 W 0 c 296 w 39 I 4232 O 40 L 25.21 25.24 25.20 @#@FSLOADPOST 2022:04:18:01:34:14 mri_em_register N 7 25.07 25.11 25.15 #-------------------------------------- #@# CA Normalize Mon Apr 18 01:34:14 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=25.0 skull bounding box = (80, 100, 67) --> (241, 254, 254) finding center of left hemi white matter using (134, 151, 161) as brain centroid of Right_Cerebral_White_Matter... mean wm in atlas = 107, using box (114,132,138) --> (153, 169,184) to find MRI wm before smoothing, mri peak at 106 robust fit to distribution - 106 +- 4.8 after smoothing, mri peak at 106, scaling input intensities by 1.009 scaling channel 0 by 1.00943 using 246437 sample points... INFO: compute sample coordinates transform 0.90478 0.01072 -0.00195 -21.38200; -0.00991 0.98991 -0.05136 -37.11880; -0.00015 0.01785 0.88287 -31.13389; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (161, 99, 61) --> (234, 220, 252) Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 27 of 4801 (0.6%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (90, 99, 61) --> (164, 222, 252) Right_Cerebral_White_Matter: limiting intensities to 103.0 --> 126.0 1407 of 4635 (30.4%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (163, 181, 85) --> (216, 228, 147) Left_Cerebellum_White_Matter: limiting intensities to 103.0 --> 132.0 151 of 275 (54.9%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (112, 181, 83) --> (161, 227, 149) Right_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0 187 of 285 (65.6%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (143, 178, 126) --> (181, 246, 160) Brain_Stem: limiting intensities to 101.0 --> 132.0 3 of 239 (1.3%) samples deleted using 10235 total control points for intensity normalization... bias field = 0.983 +- 0.077 14 of 8460 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (161, 99, 61) --> (234, 220, 252) Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 132.0 108 of 5082 (2.1%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (90, 99, 61) --> (164, 222, 252) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 121.0 206 of 4876 (4.2%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (163, 181, 85) --> (216, 228, 147) Left_Cerebellum_White_Matter: limiting intensities to 91.0 --> 132.0 184 of 350 (52.6%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (112, 181, 83) --> (161, 227, 149) Right_Cerebellum_White_Matter: limiting intensities to 89.0 --> 132.0 212 of 340 (62.4%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (143, 178, 126) --> (181, 246, 160) Brain_Stem: limiting intensities to 88.0 --> 132.0 80 of 333 (24.0%) samples deleted using 10981 total control points for intensity normalization... bias field = 1.012 +- 0.067 2 of 10126 control points discarded finding control points in Left_Cerebral_White_Matter.... found 40230 control points for structure... bounding box (161, 99, 61) --> (234, 220, 252) Left_Cerebral_White_Matter: limiting intensities to 92.0 --> 132.0 179 of 5046 (3.5%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39478 control points for structure... bounding box (90, 99, 61) --> (164, 222, 252) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 145 of 4863 (3.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3105 control points for structure... bounding box (163, 181, 85) --> (216, 228, 147) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 183 of 361 (50.7%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2710 control points for structure... bounding box (112, 181, 83) --> (161, 227, 149) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 251 of 360 (69.7%) samples deleted finding control points in Brain_Stem.... found 3475 control points for structure... bounding box (143, 178, 126) --> (181, 246, 160) Brain_Stem: limiting intensities to 88.0 --> 132.0 127 of 362 (35.1%) samples deleted using 10992 total control points for intensity normalization... bias field = 0.993 +- 0.054 2 of 10003 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 2 minutes and 4 seconds. @#@FSTIME 2022:04:18:01:34:14 mri_ca_normalize N 8 e 124.33 S 1.68 U 122.61 P 99% M 875044 F 0 R 681861 W 0 c 94 w 114 I 0 O 6240 L 25.07 25.11 25.15 @#@FSLOADPOST 2022:04:18:01:36:18 mri_ca_normalize N 8 25.23 25.13 25.15 #-------------------------------------- #@# CA Reg Mon Apr 18 01:36:18 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca'... label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.156 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.798775 #FOTS# QuadFit found better minimum quadopt=(dt=233.213,rms=0.740046) vs oldopt=(dt=369.92,rms=0.753297) #GCMRL# 0 dt 233.212510 rms 0.740 7.352% neg 0 invalid 762 tFOTS 17.1950 tGradient 7.0150 tsec 25.4770 #FOTS# QuadFit found better minimum quadopt=(dt=247.762,rms=0.724815) vs oldopt=(dt=369.92,rms=0.727651) #GCMRL# 1 dt 247.761991 rms 0.725 2.058% neg 0 invalid 762 tFOTS 17.1770 tGradient 7.1780 tsec 25.6160 #FOTS# QuadFit found better minimum quadopt=(dt=244.044,rms=0.71595) vs oldopt=(dt=369.92,rms=0.717777) #GCMRL# 2 dt 244.043956 rms 0.716 1.223% neg 0 invalid 762 tFOTS 17.0830 tGradient 7.3910 tsec 25.7030 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.71262) vs oldopt=(dt=92.48,rms=0.71331) #GCMRL# 3 dt 129.472000 rms 0.713 0.465% neg 0 invalid 762 tFOTS 17.1550 tGradient 7.1340 tsec 25.5660 #GCMRL# 4 dt 1479.680000 rms 0.700 1.706% neg 0 invalid 762 tFOTS 16.8190 tGradient 7.4650 tsec 25.4950 #GCMRL# 5 dt 369.920000 rms 0.697 0.466% neg 0 invalid 762 tFOTS 17.0180 tGradient 7.1750 tsec 25.4150 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.69624) vs oldopt=(dt=92.48,rms=0.696409) #GCMRL# 6 dt 129.472000 rms 0.696 0.000% neg 0 invalid 762 tFOTS 16.9440 tGradient 7.2170 tsec 25.4430 #GCMRL# 7 dt 129.472000 rms 0.696 0.097% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.4930 tsec 8.7370 #GCMRL# 8 dt 129.472000 rms 0.695 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.2730 tsec 8.5090 #GCMRL# 9 dt 129.472000 rms 0.693 0.167% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.3080 tsec 8.5400 #GCMRL# 10 dt 129.472000 rms 0.692 0.180% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.2140 tsec 8.4260 #GCMRL# 11 dt 129.472000 rms 0.691 0.198% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.2760 tsec 8.4920 #GCMRL# 12 dt 129.472000 rms 0.689 0.215% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.1760 tsec 8.4010 #GCMRL# 13 dt 129.472000 rms 0.688 0.242% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.2410 tsec 8.4580 #GCMRL# 14 dt 129.472000 rms 0.686 0.233% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.2170 tsec 8.4520 #GCMRL# 15 dt 129.472000 rms 0.685 0.216% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.8220 tsec 9.0690 #GCMRL# 16 dt 129.472000 rms 0.683 0.188% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.4710 tsec 8.7230 #GCMRL# 17 dt 129.472000 rms 0.682 0.172% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.4850 tsec 8.7330 #GCMRL# 18 dt 129.472000 rms 0.681 0.154% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.4900 tsec 8.7480 #GCMRL# 19 dt 129.472000 rms 0.680 0.145% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.3990 tsec 8.6180 #GCMRL# 20 dt 129.472000 rms 0.679 0.139% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.4080 tsec 8.6240 #GCMRL# 21 dt 129.472000 rms 0.678 0.123% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.6040 tsec 8.8580 #GCMRL# 22 dt 129.472000 rms 0.678 0.099% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.5960 tsec 8.8740 #FOTS# QuadFit found better minimum quadopt=(dt=887.808,rms=0.677446) vs oldopt=(dt=1479.68,rms=0.677519) #GCMRL# 23 dt 887.808000 rms 0.677 0.000% neg 0 invalid 762 tFOTS 18.2170 tGradient 7.4980 tsec 26.9900 #GCAMreg# pass 0 level1 5 level2 1 tsec 360.05 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.16 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.677959 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.677307) vs oldopt=(dt=92.48,rms=0.677315) #GCMRL# 25 dt 110.976000 rms 0.677 0.096% neg 0 invalid 762 tFOTS 17.1120 tGradient 7.4750 tsec 25.8560 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.677255) vs oldopt=(dt=92.48,rms=0.677255) #GCMRL# 26 dt 110.976000 rms 0.677 0.000% neg 0 invalid 762 tFOTS 18.1280 tGradient 7.7270 tsec 27.1440 #GCMRL# 27 dt 110.976000 rms 0.677 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.6320 tsec 8.8740 setting smoothness cost coefficient to 0.615 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.690781 #FOTS# QuadFit found better minimum quadopt=(dt=100.046,rms=0.686419) vs oldopt=(dt=103.68,rms=0.686423) #GCMRL# 29 dt 100.045977 rms 0.686 0.631% neg 0 invalid 762 tFOTS 17.1150 tGradient 5.3780 tsec 23.7630 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.682212) vs oldopt=(dt=103.68,rms=0.683043) #GCMRL# 30 dt 145.152000 rms 0.682 0.613% neg 0 invalid 762 tFOTS 17.1460 tGradient 5.4090 tsec 23.8010 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.678808) vs oldopt=(dt=103.68,rms=0.679295) #GCMRL# 31 dt 145.152000 rms 0.679 0.499% neg 0 invalid 762 tFOTS 17.2330 tGradient 5.3910 tsec 23.8600 #FOTS# QuadFit found better minimum quadopt=(dt=68.3049,rms=0.677833) vs oldopt=(dt=103.68,rms=0.678106) #GCMRL# 32 dt 68.304933 rms 0.678 0.000% neg 0 invalid 762 tFOTS 17.0480 tGradient 5.2680 tsec 23.5710 #GCMRL# 33 dt 68.304933 rms 0.677 0.191% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2160 tsec 6.4220 #GCMRL# 34 dt 68.304933 rms 0.675 0.238% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3710 tsec 6.6480 #GCMRL# 35 dt 68.304933 rms 0.673 0.269% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3850 tsec 6.6580 #GCMRL# 36 dt 68.304933 rms 0.671 0.278% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2690 tsec 6.5100 #GCMRL# 37 dt 68.304933 rms 0.669 0.288% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2800 tsec 6.5210 #GCMRL# 38 dt 68.304933 rms 0.668 0.263% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3200 tsec 6.5850 #GCMRL# 39 dt 68.304933 rms 0.666 0.194% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3750 tsec 6.6610 #GCMRL# 40 dt 68.304933 rms 0.665 0.154% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2410 tsec 6.4830 #GCMRL# 41 dt 68.304933 rms 0.664 0.132% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1760 tsec 6.4600 #GCMRL# 42 dt 68.304933 rms 0.664 0.115% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2150 tsec 6.4810 #GCMRL# 43 dt 68.304933 rms 0.663 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2240 tsec 6.5400 #GCAMreg# pass 0 level1 4 level2 1 tsec 198.125 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.62 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.663727 #GCMRL# 45 dt 0.000000 rms 0.663 0.088% neg 0 invalid 762 tFOTS 17.2340 tGradient 5.2580 tsec 23.7570 setting smoothness cost coefficient to 2.353 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.696242 #FOTS# QuadFit found better minimum quadopt=(dt=2.8,rms=0.694641) vs oldopt=(dt=2,rms=0.694819) #GCMRL# 47 dt 2.800000 rms 0.695 0.230% neg 0 invalid 762 tFOTS 16.4900 tGradient 4.5670 tsec 22.3330 #FOTS# QuadFit found better minimum quadopt=(dt=1.6,rms=0.694507) vs oldopt=(dt=2,rms=0.694517) #GCMRL# 48 dt 1.600000 rms 0.695 0.000% neg 0 invalid 762 tFOTS 16.3140 tGradient 4.7510 tsec 22.3600 #GCAMreg# pass 0 level1 3 level2 1 tsec 58.057 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.35 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.695054 #FOTS# QuadFit found better minimum quadopt=(dt=0.175,rms=0.694497) vs oldopt=(dt=0.125,rms=0.694498) #GCMRL# 50 dt 0.175000 rms 0.694 0.080% neg 0 invalid 762 tFOTS 16.4300 tGradient 4.7560 tsec 22.4620 #FOTS# QuadFit found better minimum quadopt=(dt=0.04375,rms=0.694492) vs oldopt=(dt=0.03125,rms=0.694492) #GCMRL# 51 dt 0.043750 rms 0.694 0.000% neg 0 invalid 762 tFOTS 16.4320 tGradient 4.7510 tsec 22.4930 setting smoothness cost coefficient to 8.000 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.771915 #FOTS# QuadFit found better minimum quadopt=(dt=2.76976,rms=0.745627) vs oldopt=(dt=2.88,rms=0.745669) #GCMRL# 53 dt 2.769756 rms 0.746 3.405% neg 0 invalid 762 tFOTS 16.4630 tGradient 4.6050 tsec 22.3090 #FOTS# QuadFit found better minimum quadopt=(dt=2.6283,rms=0.740011) vs oldopt=(dt=2.88,rms=0.740066) #GCMRL# 54 dt 2.628297 rms 0.740 0.753% neg 0 invalid 762 tFOTS 16.3150 tGradient 4.4810 tsec 22.0760 #FOTS# QuadFit found better minimum quadopt=(dt=2.44444,rms=0.737959) vs oldopt=(dt=2.88,rms=0.738022) #GCMRL# 55 dt 2.444444 rms 0.738 0.277% neg 0 invalid 762 tFOTS 17.2760 tGradient 4.3060 tsec 22.8290 #FOTS# QuadFit found better minimum quadopt=(dt=1.95349,rms=0.737375) vs oldopt=(dt=2.88,rms=0.737524) #GCMRL# 56 dt 1.953488 rms 0.737 0.000% neg 0 invalid 762 tFOTS 17.4130 tGradient 4.4570 tsec 23.2030 #GCMRL# 57 dt 1.953488 rms 0.737 0.073% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4840 tsec 5.7260 #GCAMreg# pass 0 level1 2 level2 1 tsec 109.322 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=8.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.737325 #GCMRL# 59 dt 0.000000 rms 0.737 0.066% neg 0 invalid 762 tFOTS 16.4810 tGradient 4.3720 tsec 22.1270 setting smoothness cost coefficient to 20.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.774288 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.773675) vs oldopt=(dt=0.08,rms=0.77369) #GCMRL# 61 dt 0.112000 rms 0.774 0.079% neg 0 invalid 762 tFOTS 16.4340 tGradient 4.3320 tsec 22.0630 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.773437) vs oldopt=(dt=0.32,rms=0.773472) #GCMRL# 62 dt 0.256000 rms 0.773 0.000% neg 0 invalid 762 tFOTS 16.5040 tGradient 4.3780 tsec 22.2030 #GCMRL# 63 dt 0.256000 rms 0.772 0.129% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3000 tsec 5.5710 #GCMRL# 64 dt 0.256000 rms 0.771 0.181% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3700 tsec 5.6310 #GCMRL# 65 dt 0.256000 rms 0.770 0.197% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2220 tsec 5.4980 #GCMRL# 66 dt 0.256000 rms 0.768 0.210% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3730 tsec 5.6290 #GCMRL# 67 dt 0.256000 rms 0.766 0.211% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2280 tsec 5.5310 #GCMRL# 68 dt 0.256000 rms 0.765 0.180% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2530 tsec 5.5430 #GCMRL# 69 dt 0.256000 rms 0.764 0.114% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2680 tsec 5.5410 #GCMRL# 70 dt 0.256000 rms 0.764 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1580 tsec 5.4510 #FOTS# QuadFit found better minimum quadopt=(dt=1.84211,rms=0.761393) vs oldopt=(dt=1.28,rms=0.761806) #GCMRL# 71 dt 1.842105 rms 0.761 0.298% neg 0 invalid 762 tFOTS 16.4660 tGradient 4.2010 tsec 21.9290 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.760992) vs oldopt=(dt=0.32,rms=0.761027) #GCMRL# 72 dt 0.256000 rms 0.761 0.000% neg 0 invalid 762 tFOTS 16.4820 tGradient 4.1940 tsec 21.9990 #GCMRL# 73 dt 0.256000 rms 0.761 0.063% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2950 tsec 5.5590 #GCMRL# 74 dt 0.256000 rms 0.760 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2710 tsec 5.5410 #GCMRL# 75 dt 0.256000 rms 0.760 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3690 tsec 5.7000 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.75969) vs oldopt=(dt=0.32,rms=0.759694) #GCAMreg# pass 0 level1 1 level2 1 tsec 177.642 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=20.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.760173 #FOTS# QuadFit found better minimum quadopt=(dt=0.256,rms=0.759582) vs oldopt=(dt=0.32,rms=0.759593) #GCMRL# 77 dt 0.256000 rms 0.760 0.078% neg 0 invalid 762 tFOTS 16.3970 tGradient 4.2620 tsec 21.9850 #FOTS# QuadFit found better minimum quadopt=(dt=1e-05,rms=0.759584) vs oldopt=(dt=1.25e-05,rms=0.759584) resetting metric properties... setting smoothness cost coefficient to 40.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.741396 #FOTS# QuadFit found better minimum quadopt=(dt=0.126059,rms=0.738119) vs oldopt=(dt=0.08,rms=0.738767) #GCMRL# 79 dt 0.126059 rms 0.738 0.442% neg 0 invalid 762 tFOTS 16.3630 tGradient 3.2750 tsec 20.9000 #FOTS# QuadFit found better minimum quadopt=(dt=0.004,rms=0.738099) vs oldopt=(dt=0.005,rms=0.7381) #GCMRL# 80 dt 0.004000 rms 0.738 0.000% neg 0 invalid 762 tFOTS 16.3870 tGradient 3.2280 tsec 20.9100 #GCAMreg# pass 0 level1 0 level2 1 tsec 53.767 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=40.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.738603 #FOTS# QuadFit found better minimum quadopt=(dt=0.007,rms=0.738075) vs oldopt=(dt=0.005,rms=0.738078) #GCMRL# 82 dt 0.007000 rms 0.738 0.071% neg 0 invalid 762 tFOTS 16.4890 tGradient 3.2600 tsec 21.0460 #GCMRL# 83 dt 0.001250 rms 0.738 0.000% neg 0 invalid 762 tFOTS 16.3850 tGradient 3.2190 tsec 20.9070 GCAMregister done in 21.6768 min Starting GCAmapRenormalizeWithAlignment() without scales renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10253 (16) mri peak = 0.04989 (50) Left_Lateral_Ventricle (4): linear fit = 2.24 x + 0.0 (1833 voxels, overlap=0.339) Left_Lateral_Ventricle (4): linear fit = 1.50 x + 0.0 (1833 voxels, peak = 36), gca=24.0 gca peak = 0.17690 (16) mri peak = 0.08540 (15) Right_Lateral_Ventricle (43): linear fit = 0.62 x + 0.0 (1251 voxels, overlap=0.449) Right_Lateral_Ventricle (43): linear fit = 0.62 x + 0.0 (1251 voxels, peak = 10), gca=9.8 gca peak = 0.28275 (96) mri peak = 0.06672 (91) Right_Pallidum (52): linear fit = 0.95 x + 0.0 (1835 voxels, overlap=0.994) Right_Pallidum (52): linear fit = 0.95 x + 0.0 (1835 voxels, peak = 92), gca=91.7 gca peak = 0.18948 (93) mri peak = 0.04734 (83) Left_Pallidum (13): linear fit = 0.88 x + 0.0 (1580 voxels, overlap=0.840) Left_Pallidum (13): linear fit = 0.88 x + 0.0 (1580 voxels, peak = 81), gca=81.4 gca peak = 0.20755 (55) mri peak = 0.13476 (63) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (2061 voxels, overlap=0.365) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (2061 voxels, peak = 61), gca=60.8 gca peak = 0.31831 (58) mri peak = 0.12935 (66) Left_Hippocampus (17): linear fit = 1.12 x + 0.0 (2039 voxels, overlap=0.091) Left_Hippocampus (17): linear fit = 1.12 x + 0.0 (2039 voxels, peak = 65), gca=64.7 gca peak = 0.11957 (102) mri peak = 0.06939 (105) Right_Cerebral_White_Matter (41): linear fit = 1.07 x + 0.0 (107761 voxels, overlap=0.576) Right_Cerebral_White_Matter (41): linear fit = 1.07 x + 0.0 (107761 voxels, peak = 109), gca=108.6 gca peak = 0.11429 (102) mri peak = 0.06813 (109) Left_Cerebral_White_Matter (2): linear fit = 1.09 x + 0.0 (112886 voxels, overlap=0.450) Left_Cerebral_White_Matter (2): linear fit = 1.09 x + 0.0 (112886 voxels, peak = 111), gca=110.7 gca peak = 0.14521 (59) mri peak = 0.04523 (63) Left_Cerebral_Cortex (3): linear fit = 1.08 x + 0.0 (73786 voxels, overlap=0.850) Left_Cerebral_Cortex (3): linear fit = 1.08 x + 0.0 (73786 voxels, peak = 63), gca=63.4 gca peak = 0.14336 (58) mri peak = 0.04737 (63) Right_Cerebral_Cortex (42): linear fit = 1.08 x + 0.0 (75272 voxels, overlap=0.923) Right_Cerebral_Cortex (42): linear fit = 1.08 x + 0.0 (75272 voxels, peak = 62), gca=62.4 gca peak = 0.13305 (70) mri peak = 0.08359 (83) Right_Caudate (50): linear fit = 1.16 x + 0.0 (1603 voxels, overlap=0.090) Right_Caudate (50): linear fit = 1.16 x + 0.0 (1603 voxels, peak = 82), gca=81.5 gca peak = 0.15761 (71) mri peak = 0.15061 (80) Left_Caudate (11): linear fit = 1.09 x + 0.0 (1828 voxels, overlap=0.469) Left_Caudate (11): linear fit = 1.09 x + 0.0 (1828 voxels, peak = 77), gca=77.0 gca peak = 0.13537 (57) mri peak = 0.05177 (58) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (57304 voxels, overlap=0.991) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (57304 voxels, peak = 57), gca=57.0 gca peak = 0.13487 (56) mri peak = 0.04730 (56) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (63715 voxels, overlap=0.996) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (63715 voxels, peak = 55), gca=55.2 gca peak = 0.19040 (84) mri peak = 0.03873 (82) Left_Cerebellum_White_Matter (7): linear fit = 0.98 x + 0.0 (17278 voxels, overlap=0.742) Left_Cerebellum_White_Matter (7): linear fit = 0.98 x + 0.0 (17278 voxels, peak = 82), gca=81.9 gca peak = 0.18871 (83) mri peak = 0.04374 (82) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (14493 voxels, overlap=0.970) Right_Cerebellum_White_Matter (46): linear fit = 0.98 x + 0.0 (14493 voxels, peak = 81), gca=80.9 gca peak = 0.24248 (57) mri peak = 0.16491 (68) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (855 voxels, overlap=0.040) Left_Amygdala (18): linear fit = 1.15 x + 0.0 (855 voxels, peak = 66), gca=65.8 gca peak = 0.35833 (56) mri peak = 0.17744 (63) Right_Amygdala (54): linear fit = 1.09 x + 0.0 (920 voxels, overlap=0.174) Right_Amygdala (54): linear fit = 1.09 x + 0.0 (920 voxels, peak = 61), gca=60.8 gca peak = 0.12897 (85) mri peak = 0.04842 (88) Left_Thalamus (10): linear fit = 1.02 x + 0.0 (9307 voxels, overlap=0.943) Left_Thalamus (10): linear fit = 1.02 x + 0.0 (9307 voxels, peak = 87), gca=87.1 gca peak = 0.13127 (83) mri peak = 0.07206 (83) Right_Thalamus (49): linear fit = 1.01 x + 0.0 (7142 voxels, overlap=0.880) Right_Thalamus (49): linear fit = 1.01 x + 0.0 (7142 voxels, peak = 84), gca=84.2 gca peak = 0.12974 (78) mri peak = 0.09107 (84) Left_Putamen (12): linear fit = 1.04 x + 0.0 (4205 voxels, overlap=0.703) Left_Putamen (12): linear fit = 1.04 x + 0.0 (4205 voxels, peak = 82), gca=81.5 gca peak = 0.17796 (79) mri peak = 0.11412 (80) Right_Putamen (51): linear fit = 1.02 x + 0.0 (4592 voxels, overlap=0.861) Right_Putamen (51): linear fit = 1.02 x + 0.0 (4592 voxels, peak = 81), gca=81.0 gca peak = 0.10999 (80) mri peak = 0.05977 (90) Brain_Stem (16): linear fit = 1.14 x + 0.0 (17783 voxels, overlap=0.417) Brain_Stem (16): linear fit = 1.14 x + 0.0 (17783 voxels, peak = 92), gca=91.6 gca peak = 0.13215 (88) mri peak = 0.06645 (100) Right_VentralDC (60): linear fit = 1.13 x + 0.0 (2046 voxels, overlap=0.617) Right_VentralDC (60): linear fit = 1.13 x + 0.0 (2046 voxels, peak = 100), gca=99.9 gca peak = 0.11941 (89) mri peak = 0.05446 (100) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (2249 voxels, overlap=0.854) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (2249 voxels, peak = 97), gca=97.5 gca peak = 0.20775 (25) mri peak = 0.02752 (15) Third_Ventricle (14): linear fit = 1.76 x + 0.0 (84 voxels, overlap=0.073) Third_Ventricle (14): linear fit = 1.76 x + 0.0 (84 voxels, peak = 44), gca=44.1 gca peak = 0.13297 (21) mri peak = 0.09412 (55) Fourth_Ventricle (15): linear fit = 2.56 x + 0.0 (823 voxels, overlap=0.023) Fourth_Ventricle (15): linear fit = 2.56 x + 0.0 (823 voxels, peak = 54), gca=53.7 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.19087 (28) gca peak Third_Ventricle = 0.20775 (25) gca peak Fourth_Ventricle = 0.13297 (21) gca peak CSF = 0.16821 (33) gca peak Left_Accumbens_area = 0.32850 (63) gca peak Left_undetermined = 0.98480 (28) gca peak Left_vessel = 0.40887 (53) gca peak Left_choroid_plexus = 0.10898 (46) gca peak Right_Inf_Lat_Vent = 0.17798 (26) gca peak Right_Accumbens_area = 0.30137 (64) gca peak Right_vessel = 0.47828 (52) gca peak Right_choroid_plexus = 0.11612 (45) gca peak Fifth_Ventricle = 0.59466 (35) gca peak WM_hypointensities = 0.10053 (78) gca peak non_WM_hypointensities = 0.07253 (60) gca peak Optic_Chiasm = 0.25330 (73) not using caudate to estimate GM means estimating mean gm scale to be 1.10 x + 0.0 estimating mean wm scale to be 1.08 x + 0.0 estimating mean csf scale to be 1.06 x + 0.0 saving intensity scales to talairach.label_intensities.txt GCAmapRenormalizeWithAlignment() took 7.09448 min noneg pre Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.787554 #FOTS# QuadFit found better minimum quadopt=(dt=306.021,rms=0.758491) vs oldopt=(dt=369.92,rms=0.759688) #GCMRL# 85 dt 306.020802 rms 0.758 3.690% neg 0 invalid 762 tFOTS 17.5940 tGradient 6.5180 tsec 25.4110 #FOTS# QuadFit found better minimum quadopt=(dt=208,rms=0.75024) vs oldopt=(dt=92.48,rms=0.75317) #GCMRL# 86 dt 208.000000 rms 0.750 1.088% neg 0 invalid 762 tFOTS 18.7420 tGradient 6.5450 tsec 26.5880 #FOTS# QuadFit found better minimum quadopt=(dt=221.952,rms=0.74516) vs oldopt=(dt=369.92,rms=0.745845) #GCMRL# 87 dt 221.952000 rms 0.745 0.677% neg 0 invalid 762 tFOTS 16.5710 tGradient 6.7560 tsec 24.5970 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.742402) vs oldopt=(dt=92.48,rms=0.742979) #GCMRL# 88 dt 129.472000 rms 0.742 0.370% neg 0 invalid 762 tFOTS 17.5920 tGradient 6.4440 tsec 25.3330 #GCMRL# 89 dt 1479.680000 rms 0.732 1.357% neg 0 invalid 762 tFOTS 17.6280 tGradient 6.5040 tsec 25.4200 #FOTS# QuadFit found better minimum quadopt=(dt=144.842,rms=0.727973) vs oldopt=(dt=92.48,rms=0.728774) #GCMRL# 90 dt 144.842105 rms 0.728 0.595% neg 0 invalid 762 tFOTS 18.6160 tGradient 6.6700 tsec 26.5600 #GCMRL# 91 dt 369.920000 rms 0.726 0.243% neg 0 invalid 762 tFOTS 17.6540 tGradient 6.5540 tsec 25.5090 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.724007) vs oldopt=(dt=92.48,rms=0.724431) #GCMRL# 92 dt 129.472000 rms 0.724 0.302% neg 0 invalid 762 tFOTS 17.3920 tGradient 6.7560 tsec 25.4420 #FOTS# QuadFit found better minimum quadopt=(dt=1775.62,rms=0.719439) vs oldopt=(dt=1479.68,rms=0.719489) #GCMRL# 93 dt 1775.616000 rms 0.719 0.631% neg 0 invalid 762 tFOTS 17.6270 tGradient 6.8080 tsec 25.7200 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.714695) vs oldopt=(dt=92.48,rms=0.715047) #GCMRL# 94 dt 129.472000 rms 0.715 0.659% neg 0 invalid 762 tFOTS 17.5380 tGradient 6.6990 tsec 25.5580 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.714105) vs oldopt=(dt=369.92,rms=0.714139) #GCMRL# 95 dt 295.936000 rms 0.714 0.083% neg 0 invalid 762 tFOTS 17.6080 tGradient 6.7690 tsec 25.6790 #FOTS# QuadFit found better minimum quadopt=(dt=295.936,rms=0.713128) vs oldopt=(dt=369.92,rms=0.713328) #GCMRL# 96 dt 295.936000 rms 0.713 0.137% neg 0 invalid 762 tFOTS 17.4510 tGradient 6.7500 tsec 25.4860 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.712559) vs oldopt=(dt=92.48,rms=0.712589) #GCMRL# 97 dt 129.472000 rms 0.713 0.080% neg 0 invalid 762 tFOTS 17.5900 tGradient 6.7010 tsec 25.5890 #FOTS# QuadFit found better minimum quadopt=(dt=1183.74,rms=0.710279) vs oldopt=(dt=1479.68,rms=0.710401) #GCMRL# 98 dt 1183.744000 rms 0.710 0.320% neg 0 invalid 762 tFOTS 18.4540 tGradient 6.5380 tsec 26.2820 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.709109) vs oldopt=(dt=92.48,rms=0.709129) #GCMRL# 99 dt 110.976000 rms 0.709 0.165% neg 0 invalid 762 tFOTS 17.5360 tGradient 6.6500 tsec 25.4620 #GCMRL# 100 dt 5918.720000 rms 0.700 1.260% neg 0 invalid 762 tFOTS 18.6260 tGradient 6.6500 tsec 26.5270 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.6988) vs oldopt=(dt=92.48,rms=0.698932) #GCMRL# 101 dt 129.472000 rms 0.699 0.196% neg 0 invalid 762 tFOTS 17.6470 tGradient 6.3800 tsec 25.3150 #GCMRL# 102 dt 92.480000 rms 0.699 0.000% neg 0 invalid 762 tFOTS 17.6300 tGradient 6.7310 tsec 25.6920 #GCMRL# 103 dt 92.480000 rms 0.699 0.006% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7640 tsec 8.0520 #GCMRL# 104 dt 92.480000 rms 0.699 0.005% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5150 tsec 7.7710 #GCMRL# 105 dt 92.480000 rms 0.699 0.012% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6380 tsec 7.9220 #GCMRL# 106 dt 92.480000 rms 0.698 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7860 tsec 8.0930 #GCMRL# 107 dt 92.480000 rms 0.698 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7260 tsec 8.0040 #GCMRL# 108 dt 92.480000 rms 0.698 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5620 tsec 7.8620 #GCMRL# 109 dt 92.480000 rms 0.697 0.084% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6130 tsec 7.9080 #GCMRL# 110 dt 92.480000 rms 0.696 0.093% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5710 tsec 7.8400 #GCMRL# 111 dt 92.480000 rms 0.696 0.096% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7290 tsec 7.9850 #GCMRL# 112 dt 92.480000 rms 0.695 0.086% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6810 tsec 7.9610 #GCMRL# 113 dt 92.480000 rms 0.695 0.077% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5900 tsec 7.8710 #GCMRL# 114 dt 92.480000 rms 0.694 0.077% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6220 tsec 7.8990 #GCMRL# 115 dt 92.480000 rms 0.693 0.079% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7740 tsec 8.0660 #GCMRL# 116 dt 92.480000 rms 0.693 0.083% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4990 tsec 7.7780 #GCMRL# 117 dt 92.480000 rms 0.692 0.088% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5600 tsec 7.8290 #GCMRL# 118 dt 92.480000 rms 0.692 0.085% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5690 tsec 7.8320 #GCMRL# 119 dt 92.480000 rms 0.691 0.086% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6170 tsec 7.9100 #GCMRL# 120 dt 92.480000 rms 0.691 0.079% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.2910 tsec 7.6010 #GCMRL# 121 dt 92.480000 rms 0.690 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5640 tsec 7.8840 #GCMRL# 122 dt 92.480000 rms 0.690 0.063% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4520 tsec 7.7650 #GCMRL# 123 dt 92.480000 rms 0.689 0.061% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.2930 tsec 7.5840 #GCMRL# 124 dt 92.480000 rms 0.689 0.061% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3890 tsec 7.6930 #GCMRL# 125 dt 92.480000 rms 0.688 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4330 tsec 7.7460 #GCMRL# 126 dt 92.480000 rms 0.688 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4240 tsec 7.7050 #GCMRL# 127 dt 92.480000 rms 0.688 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3980 tsec 7.6600 #GCMRL# 128 dt 92.480000 rms 0.687 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3090 tsec 7.5920 #GCMRL# 129 dt 92.480000 rms 0.687 0.054% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3870 tsec 7.6950 #GCMRL# 130 dt 92.480000 rms 0.686 0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3110 tsec 7.6090 #GCMRL# 131 dt 92.480000 rms 0.686 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6840 tsec 7.9840 #GCMRL# 132 dt 92.480000 rms 0.686 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6670 tsec 7.9550 #GCMRL# 133 dt 92.480000 rms 0.685 0.060% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3630 tsec 7.6090 #GCMRL# 134 dt 92.480000 rms 0.685 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4230 tsec 7.7070 #GCMRL# 135 dt 92.480000 rms 0.684 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4250 tsec 7.7390 #GCMRL# 136 dt 92.480000 rms 0.684 0.052% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4090 tsec 7.6820 #GCMRL# 137 dt 92.480000 rms 0.684 0.050% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3840 tsec 7.6920 #GCMRL# 138 dt 92.480000 rms 0.683 0.048% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4740 tsec 7.7490 #GCMRL# 139 dt 92.480000 rms 0.683 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4240 tsec 7.7190 #GCMRL# 140 dt 92.480000 rms 0.683 0.046% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3770 tsec 7.6660 #GCMRL# 141 dt 92.480000 rms 0.682 0.046% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4490 tsec 7.7320 #GCMRL# 142 dt 92.480000 rms 0.682 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4660 tsec 7.7640 #GCMRL# 143 dt 92.480000 rms 0.682 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5130 tsec 7.7850 #GCMRL# 144 dt 92.480000 rms 0.682 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3510 tsec 7.6510 #GCMRL# 145 dt 92.480000 rms 0.681 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3990 tsec 7.7130 #GCMRL# 146 dt 92.480000 rms 0.681 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5080 tsec 7.7840 #GCMRL# 147 dt 92.480000 rms 0.681 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4220 tsec 7.7210 #GCMRL# 148 dt 92.480000 rms 0.680 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5550 tsec 7.8440 #GCMRL# 149 dt 92.480000 rms 0.680 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4620 tsec 7.7570 #GCMRL# 150 dt 92.480000 rms 0.680 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.3390 tsec 7.6080 #GCMRL# 151 dt 92.480000 rms 0.680 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4180 tsec 7.6840 #GCMRL# 152 dt 92.480000 rms 0.679 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5060 tsec 7.7570 #GCMRL# 153 dt 92.480000 rms 0.679 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5660 tsec 7.8620 #GCMRL# 154 dt 92.480000 rms 0.679 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5550 tsec 7.8910 #GCMRL# 155 dt 92.480000 rms 0.679 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5640 tsec 7.8640 #GCMRL# 156 dt 92.480000 rms 0.679 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4640 tsec 7.7510 #GCMRL# 157 dt 92.480000 rms 0.678 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5430 tsec 7.8570 #GCMRL# 158 dt 92.480000 rms 0.678 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5910 tsec 7.8850 #GCMRL# 159 dt 92.480000 rms 0.678 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4400 tsec 7.6900 #GCMRL# 160 dt 92.480000 rms 0.678 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5730 tsec 7.8600 #GCMRL# 161 dt 92.480000 rms 0.677 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4770 tsec 7.7710 #GCMRL# 162 dt 92.480000 rms 0.677 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5560 tsec 7.8270 #GCMRL# 163 dt 92.480000 rms 0.677 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6210 tsec 7.8930 #GCMRL# 164 dt 92.480000 rms 0.677 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5570 tsec 7.8750 #GCMRL# 165 dt 92.480000 rms 0.677 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5280 tsec 7.8250 #GCMRL# 166 dt 92.480000 rms 0.676 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4510 tsec 7.7110 #GCMRL# 167 dt 92.480000 rms 0.676 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6620 tsec 7.9070 #GCMRL# 168 dt 92.480000 rms 0.676 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5040 tsec 7.7880 #GCMRL# 169 dt 92.480000 rms 0.676 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7390 tsec 8.0680 #GCMRL# 170 dt 92.480000 rms 0.676 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.8850 tsec 8.1820 #GCMRL# 171 dt 92.480000 rms 0.675 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6860 tsec 7.9640 #GCMRL# 172 dt 92.480000 rms 0.675 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5680 tsec 7.8520 #GCMRL# 173 dt 92.480000 rms 0.675 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7080 tsec 7.9710 #GCMRL# 174 dt 92.480000 rms 0.675 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6670 tsec 7.9570 #GCMRL# 175 dt 92.480000 rms 0.675 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4680 tsec 7.7640 #GCMRL# 176 dt 92.480000 rms 0.674 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5890 tsec 7.8600 #GCMRL# 177 dt 92.480000 rms 0.674 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6490 tsec 7.9100 #GCMRL# 178 dt 92.480000 rms 0.674 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6610 tsec 7.9420 #GCMRL# 179 dt 92.480000 rms 0.674 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.4860 tsec 7.7750 #GCMRL# 180 dt 92.480000 rms 0.674 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6760 tsec 7.9520 #GCMRL# 181 dt 92.480000 rms 0.674 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6560 tsec 7.9420 #GCMRL# 182 dt 92.480000 rms 0.673 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5730 tsec 7.8660 #GCMRL# 183 dt 92.480000 rms 0.673 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7700 tsec 8.0300 #GCMRL# 184 dt 92.480000 rms 0.673 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5310 tsec 7.8020 #GCMRL# 185 dt 92.480000 rms 0.673 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7490 tsec 8.0430 #GCMRL# 186 dt 92.480000 rms 0.673 0.023% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5840 tsec 7.8860 #FOTS# QuadFit found better minimum quadopt=(dt=8286.21,rms=0.67206) vs oldopt=(dt=5918.72,rms=0.672106) #GCMRL# 187 dt 8286.208000 rms 0.672 0.095% neg 0 invalid 762 tFOTS 18.7100 tGradient 6.8100 tsec 26.8110 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.671559) vs oldopt=(dt=92.48,rms=0.671593) #GCMRL# 188 dt 129.472000 rms 0.672 0.075% neg 0 invalid 762 tFOTS 17.7860 tGradient 6.4750 tsec 25.5540 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.670998) vs oldopt=(dt=369.92,rms=0.671101) #GCMRL# 189 dt 517.888000 rms 0.671 0.084% neg 0 invalid 762 tFOTS 18.7670 tGradient 6.6500 tsec 26.7220 #GCMRL# 190 dt 0.850000 rms 0.671 0.000% neg 0 invalid 762 tFOTS 17.6320 tGradient 6.5180 tsec 26.6560 #GCAMreg# pass 0 level1 5 level2 1 tsec 1240.54 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.671817 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.670734) vs oldopt=(dt=92.48,rms=0.670791) #GCMRL# 192 dt 129.472000 rms 0.671 0.161% neg 0 invalid 762 tFOTS 17.6870 tGradient 6.4980 tsec 25.4940 #FOTS# QuadFit found better minimum quadopt=(dt=443.904,rms=0.670189) vs oldopt=(dt=369.92,rms=0.670208) #GCMRL# 193 dt 443.904000 rms 0.670 0.081% neg 0 invalid 762 tFOTS 18.5630 tGradient 6.6060 tsec 26.4680 #FOTS# QuadFit found better minimum quadopt=(dt=517.888,rms=0.669618) vs oldopt=(dt=369.92,rms=0.669683) #GCMRL# 194 dt 517.888000 rms 0.670 0.085% neg 0 invalid 762 tFOTS 18.7150 tGradient 6.6450 tsec 26.6360 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.669632) vs oldopt=(dt=92.48,rms=0.669635) #GCMRL# 195 dt 110.976000 rms 0.670 0.000% neg 0 invalid 762 tFOTS 18.7520 tGradient 6.6190 tsec 27.8730 #GCMRL# 196 dt 110.976000 rms 0.670 0.007% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5570 tsec 7.8570 #GCMRL# 197 dt 110.976000 rms 0.670 0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6880 tsec 7.9860 #GCMRL# 198 dt 110.976000 rms 0.670 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6660 tsec 7.9600 #GCMRL# 199 dt 110.976000 rms 0.669 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7170 tsec 8.0240 #GCMRL# 200 dt 110.976000 rms 0.669 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7350 tsec 8.0050 #GCMRL# 201 dt 110.976000 rms 0.669 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7880 tsec 8.0610 #GCMRL# 202 dt 110.976000 rms 0.669 0.020% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7750 tsec 8.0850 #GCMRL# 203 dt 110.976000 rms 0.669 0.008% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6660 tsec 7.9900 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.668718) vs oldopt=(dt=92.48,rms=0.668723) #GCMRL# 204 dt 129.472000 rms 0.669 0.000% neg 0 invalid 762 tFOTS 18.6990 tGradient 6.6060 tsec 26.6410 #GCMRL# 205 dt 129.472000 rms 0.669 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6670 tsec 7.9630 #GCMRL# 206 dt 129.472000 rms 0.669 0.006% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5870 tsec 7.9040 #GCMRL# 207 dt 129.472000 rms 0.669 0.009% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6920 tsec 7.9810 #GCMRL# 208 dt 129.472000 rms 0.669 0.014% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.7040 tsec 7.9830 #GCMRL# 209 dt 129.472000 rms 0.668 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5580 tsec 7.8610 #GCMRL# 210 dt 129.472000 rms 0.668 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5790 tsec 7.8980 #GCMRL# 211 dt 129.472000 rms 0.668 0.016% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.5750 tsec 7.8780 #GCMRL# 212 dt 129.472000 rms 0.668 0.017% neg 0 invalid 762 tFOTS 0.0000 tGradient 6.6160 tsec 7.9390 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.67201 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.666725) vs oldopt=(dt=103.68,rms=0.66705) #GCMRL# 214 dt 145.152000 rms 0.667 0.786% neg 0 invalid 762 tFOTS 17.7490 tGradient 5.1030 tsec 24.1240 #FOTS# QuadFit found better minimum quadopt=(dt=152.736,rms=0.659684) vs oldopt=(dt=103.68,rms=0.660339) #GCMRL# 215 dt 152.736196 rms 0.660 1.056% neg 0 invalid 762 tFOTS 17.6640 tGradient 5.2360 tsec 24.1780 #FOTS# QuadFit found better minimum quadopt=(dt=67.0189,rms=0.65663) vs oldopt=(dt=25.92,rms=0.657392) #GCMRL# 216 dt 67.018868 rms 0.657 0.463% neg 0 invalid 762 tFOTS 17.6400 tGradient 5.0260 tsec 23.9300 #FOTS# QuadFit found better minimum quadopt=(dt=331.776,rms=0.648145) vs oldopt=(dt=414.72,rms=0.648197) #GCMRL# 217 dt 331.776000 rms 0.648 1.292% neg 0 invalid 762 tFOTS 16.6280 tGradient 5.0870 tsec 23.0250 #FOTS# QuadFit found better minimum quadopt=(dt=45.8105,rms=0.645139) vs oldopt=(dt=25.92,rms=0.645545) #GCMRL# 218 dt 45.810526 rms 0.645 0.464% neg 0 invalid 762 tFOTS 17.5450 tGradient 5.1520 tsec 23.9840 #FOTS# QuadFit found better minimum quadopt=(dt=497.664,rms=0.640683) vs oldopt=(dt=414.72,rms=0.640752) #GCMRL# 219 dt 497.664000 rms 0.641 0.691% neg 0 invalid 762 tFOTS 16.5520 tGradient 5.2790 tsec 23.1280 #FOTS# QuadFit found better minimum quadopt=(dt=66.9993,rms=0.634173) vs oldopt=(dt=103.68,rms=0.636073) #GCMRL# 220 dt 66.999340 rms 0.634 1.016% neg 0 invalid 762 tFOTS 17.6910 tGradient 5.2620 tsec 24.2490 #GCMRL# 221 dt 25.920000 rms 0.634 0.000% neg 0 invalid 762 tFOTS 16.8690 tGradient 5.0960 tsec 23.2770 #GCMRL# 222 dt 25.920000 rms 0.634 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1850 tsec 6.4550 #GCMRL# 223 dt 25.920000 rms 0.633 0.044% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1080 tsec 6.4000 #GCMRL# 224 dt 25.920000 rms 0.633 0.093% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1250 tsec 6.4040 #GCMRL# 225 dt 25.920000 rms 0.632 0.167% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0860 tsec 6.3800 #GCMRL# 226 dt 25.920000 rms 0.630 0.235% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1840 tsec 6.4590 #GCMRL# 227 dt 25.920000 rms 0.629 0.256% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2430 tsec 6.5000 #GCMRL# 228 dt 25.920000 rms 0.627 0.245% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1890 tsec 6.4520 #GCMRL# 229 dt 25.920000 rms 0.626 0.231% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1480 tsec 6.4300 #GCMRL# 230 dt 25.920000 rms 0.624 0.211% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2060 tsec 6.4620 #GCMRL# 231 dt 25.920000 rms 0.623 0.199% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1840 tsec 6.4450 #GCMRL# 232 dt 25.920000 rms 0.622 0.208% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2030 tsec 6.5240 #GCMRL# 233 dt 25.920000 rms 0.620 0.233% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2670 tsec 6.6010 #GCMRL# 234 dt 25.920000 rms 0.619 0.249% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1820 tsec 6.4900 #GCMRL# 235 dt 25.920000 rms 0.617 0.237% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2010 tsec 6.4940 #GCMRL# 236 dt 25.920000 rms 0.616 0.206% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0640 tsec 6.3630 #GCMRL# 237 dt 25.920000 rms 0.615 0.186% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2690 tsec 6.5490 #GCMRL# 238 dt 25.920000 rms 0.614 0.163% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3490 tsec 6.6110 #GCMRL# 239 dt 25.920000 rms 0.613 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2320 tsec 6.5130 #GCMRL# 240 dt 25.920000 rms 0.612 0.152% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2720 tsec 6.5830 #GCMRL# 241 dt 25.920000 rms 0.611 0.156% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1380 tsec 6.4410 #GCMRL# 242 dt 25.920000 rms 0.610 0.159% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2130 tsec 6.5260 #GCMRL# 243 dt 25.920000 rms 0.609 0.158% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2770 tsec 6.5880 #GCMRL# 244 dt 25.920000 rms 0.608 0.135% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1870 tsec 6.4680 #GCMRL# 245 dt 25.920000 rms 0.608 0.123% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1980 tsec 6.5030 #GCMRL# 246 dt 25.920000 rms 0.607 0.108% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2620 tsec 6.5560 #GCMRL# 247 dt 25.920000 rms 0.606 0.106% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2880 tsec 6.5810 #GCMRL# 248 dt 25.920000 rms 0.606 0.109% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3920 tsec 6.7060 #GCMRL# 249 dt 25.920000 rms 0.605 0.121% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2710 tsec 6.5770 #GCMRL# 250 dt 25.920000 rms 0.604 0.120% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2290 tsec 6.5210 #GCMRL# 251 dt 25.920000 rms 0.604 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1880 tsec 6.4990 #GCMRL# 252 dt 25.920000 rms 0.603 0.098% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1520 tsec 6.4540 #GCMRL# 253 dt 25.920000 rms 0.602 0.087% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2730 tsec 6.5720 #GCMRL# 254 dt 25.920000 rms 0.602 0.083% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2420 tsec 6.5480 #GCMRL# 255 dt 25.920000 rms 0.601 0.080% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3100 tsec 6.6120 #GCMRL# 256 dt 25.920000 rms 0.601 0.082% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1890 tsec 6.4970 #GCMRL# 257 dt 25.920000 rms 0.600 0.091% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1420 tsec 6.4460 #GCMRL# 258 dt 25.920000 rms 0.600 0.094% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0730 tsec 6.3510 #GCMRL# 259 dt 25.920000 rms 0.599 0.091% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1350 tsec 6.4570 #GCMRL# 260 dt 25.920000 rms 0.599 0.079% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1800 tsec 6.5080 #GCMRL# 261 dt 25.920000 rms 0.598 0.073% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3290 tsec 6.6300 #GCMRL# 262 dt 25.920000 rms 0.598 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2050 tsec 6.5010 #GCMRL# 263 dt 25.920000 rms 0.598 0.073% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3350 tsec 6.6300 #GCMRL# 264 dt 25.920000 rms 0.597 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3840 tsec 6.7020 #GCMRL# 265 dt 25.920000 rms 0.597 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3760 tsec 6.6590 #GCMRL# 266 dt 25.920000 rms 0.596 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1110 tsec 6.3930 #GCMRL# 267 dt 25.920000 rms 0.596 0.063% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0740 tsec 6.3830 #GCMRL# 268 dt 25.920000 rms 0.596 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0710 tsec 6.3760 #GCMRL# 269 dt 25.920000 rms 0.595 0.056% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2790 tsec 6.5640 #GCMRL# 270 dt 25.920000 rms 0.595 0.051% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1870 tsec 6.5160 #GCMRL# 271 dt 25.920000 rms 0.595 0.054% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1330 tsec 6.4480 #GCMRL# 272 dt 25.920000 rms 0.594 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1090 tsec 6.3940 #GCMRL# 273 dt 25.920000 rms 0.594 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2250 tsec 6.5300 #GCMRL# 274 dt 25.920000 rms 0.594 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2960 tsec 6.6180 #GCMRL# 275 dt 25.920000 rms 0.593 0.051% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3650 tsec 6.6760 #GCMRL# 276 dt 25.920000 rms 0.593 0.045% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1250 tsec 6.4170 #GCMRL# 277 dt 25.920000 rms 0.593 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0710 tsec 6.4000 #GCMRL# 278 dt 25.920000 rms 0.593 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1010 tsec 6.4040 #GCMRL# 279 dt 25.920000 rms 0.592 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1870 tsec 6.4880 #GCMRL# 280 dt 25.920000 rms 0.592 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1740 tsec 6.4740 #GCMRL# 281 dt 25.920000 rms 0.592 0.046% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1630 tsec 6.4420 #GCMRL# 282 dt 25.920000 rms 0.592 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1230 tsec 6.4010 #GCMRL# 283 dt 25.920000 rms 0.591 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2200 tsec 6.5230 #GCMRL# 284 dt 25.920000 rms 0.591 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1210 tsec 6.4090 #GCMRL# 285 dt 25.920000 rms 0.591 0.035% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1350 tsec 6.4150 #GCMRL# 286 dt 25.920000 rms 0.591 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1570 tsec 6.4750 #GCMRL# 287 dt 25.920000 rms 0.590 0.040% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2450 tsec 6.5390 #GCMRL# 288 dt 25.920000 rms 0.590 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1800 tsec 6.5010 #GCMRL# 289 dt 25.920000 rms 0.590 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2190 tsec 6.5480 #GCMRL# 290 dt 25.920000 rms 0.590 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3250 tsec 6.6720 #GCMRL# 291 dt 25.920000 rms 0.590 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1870 tsec 6.4910 #GCMRL# 292 dt 25.920000 rms 0.589 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3060 tsec 6.6050 #GCMRL# 293 dt 25.920000 rms 0.589 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2470 tsec 6.5670 #GCMRL# 294 dt 25.920000 rms 0.589 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2050 tsec 6.5210 #GCMRL# 295 dt 25.920000 rms 0.589 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2540 tsec 6.5500 #GCMRL# 296 dt 25.920000 rms 0.589 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1950 tsec 6.5120 #GCMRL# 297 dt 25.920000 rms 0.588 0.032% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2540 tsec 6.5730 #GCMRL# 298 dt 25.920000 rms 0.588 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2700 tsec 6.5510 #GCMRL# 299 dt 25.920000 rms 0.588 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2700 tsec 6.5720 #GCMRL# 300 dt 25.920000 rms 0.588 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2840 tsec 6.6090 #GCMRL# 301 dt 25.920000 rms 0.588 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2650 tsec 6.5580 #GCMRL# 302 dt 25.920000 rms 0.588 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1580 tsec 6.4820 #FOTS# QuadFit found better minimum quadopt=(dt=580.608,rms=0.587179) vs oldopt=(dt=414.72,rms=0.587272) #GCMRL# 303 dt 580.608000 rms 0.587 0.089% neg 0 invalid 762 tFOTS 18.9540 tGradient 5.3530 tsec 25.5990 #FOTS# QuadFit found better minimum quadopt=(dt=5.184,rms=0.587213) vs oldopt=(dt=6.48,rms=0.587213) #GCMRL# 304 dt 5.184000 rms 0.587 0.000% neg 0 invalid 762 tFOTS 17.8790 tGradient 5.4320 tsec 25.8220 #GCMRL# 305 dt 5.184000 rms 0.587 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.4190 tsec 6.6870 #GCAMreg# pass 0 level1 4 level2 1 tsec 789.373 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.588274 #FOTS# QuadFit found better minimum quadopt=(dt=81.1852,rms=0.585785) vs oldopt=(dt=103.68,rms=0.585893) #GCMRL# 307 dt 81.185185 rms 0.586 0.423% neg 0 invalid 762 tFOTS 17.6850 tGradient 5.3500 tsec 24.3440 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.585283) vs oldopt=(dt=103.68,rms=0.585452) #GCMRL# 308 dt 62.208000 rms 0.585 0.086% neg 0 invalid 762 tFOTS 17.8430 tGradient 5.0940 tsec 24.2370 #FOTS# QuadFit found better minimum quadopt=(dt=124.416,rms=0.584694) vs oldopt=(dt=103.68,rms=0.58471) #GCMRL# 309 dt 124.416000 rms 0.585 0.100% neg 0 invalid 762 tFOTS 17.8230 tGradient 5.2980 tsec 24.4410 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.584471) vs oldopt=(dt=25.92,rms=0.584495) #GCMRL# 310 dt 36.288000 rms 0.584 0.000% neg 0 invalid 762 tFOTS 17.7600 tGradient 5.2340 tsec 24.3350 #GCMRL# 311 dt 36.288000 rms 0.584 0.017% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1390 tsec 6.4600 #GCMRL# 312 dt 36.288000 rms 0.584 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1420 tsec 6.4600 #GCMRL# 313 dt 36.288000 rms 0.584 0.042% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2000 tsec 6.4980 #GCMRL# 314 dt 36.288000 rms 0.584 0.049% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1370 tsec 6.4230 #GCMRL# 315 dt 36.288000 rms 0.583 0.049% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3210 tsec 6.6040 #GCMRL# 316 dt 36.288000 rms 0.583 0.043% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1620 tsec 6.4680 #GCMRL# 317 dt 36.288000 rms 0.583 0.041% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1770 tsec 6.4670 #GCMRL# 318 dt 36.288000 rms 0.583 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1390 tsec 6.4480 #GCMRL# 319 dt 36.288000 rms 0.582 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1840 tsec 6.5130 #GCMRL# 320 dt 36.288000 rms 0.582 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1370 tsec 6.4470 #GCMRL# 321 dt 36.288000 rms 0.582 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1350 tsec 6.4250 #GCMRL# 322 dt 36.288000 rms 0.582 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1760 tsec 6.4950 #GCMRL# 323 dt 36.288000 rms 0.582 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1680 tsec 6.4780 #GCMRL# 324 dt 36.288000 rms 0.581 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1960 tsec 6.4630 #GCMRL# 325 dt 36.288000 rms 0.581 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1160 tsec 6.4070 #GCMRL# 326 dt 36.288000 rms 0.581 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1380 tsec 6.4530 #GCMRL# 327 dt 36.288000 rms 0.581 0.039% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1640 tsec 6.4630 #GCMRL# 328 dt 36.288000 rms 0.581 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.3210 tsec 6.6340 #GCMRL# 329 dt 36.288000 rms 0.580 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1730 tsec 6.5080 #GCMRL# 330 dt 36.288000 rms 0.580 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1420 tsec 6.4480 #GCMRL# 331 dt 36.288000 rms 0.580 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2620 tsec 6.5590 #GCMRL# 332 dt 36.288000 rms 0.580 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2560 tsec 6.5700 #GCMRL# 333 dt 36.288000 rms 0.580 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2320 tsec 6.5210 #GCMRL# 334 dt 36.288000 rms 0.580 0.030% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2440 tsec 6.5350 #GCMRL# 335 dt 36.288000 rms 0.579 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1860 tsec 6.4800 #GCMRL# 336 dt 36.288000 rms 0.579 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1070 tsec 6.4200 #GCMRL# 337 dt 36.288000 rms 0.579 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1790 tsec 6.4630 #GCMRL# 338 dt 36.288000 rms 0.579 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1770 tsec 6.4590 #GCMRL# 339 dt 36.288000 rms 0.579 0.034% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2480 tsec 6.5540 #GCMRL# 340 dt 36.288000 rms 0.578 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2930 tsec 6.6060 #GCMRL# 341 dt 36.288000 rms 0.578 0.036% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2580 tsec 6.5080 #GCMRL# 342 dt 36.288000 rms 0.578 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1320 tsec 6.4170 #GCMRL# 343 dt 36.288000 rms 0.578 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1560 tsec 6.4600 #GCMRL# 344 dt 36.288000 rms 0.578 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1420 tsec 6.4490 #GCMRL# 345 dt 36.288000 rms 0.578 0.022% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1340 tsec 6.4160 #GCMRL# 346 dt 36.288000 rms 0.578 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0850 tsec 6.3390 #GCMRL# 347 dt 36.288000 rms 0.577 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1500 tsec 6.4420 #GCMRL# 348 dt 36.288000 rms 0.577 0.031% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2500 tsec 6.5770 #GCMRL# 349 dt 36.288000 rms 0.577 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2330 tsec 6.5360 #GCMRL# 350 dt 36.288000 rms 0.577 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1450 tsec 6.4480 #GCMRL# 351 dt 36.288000 rms 0.577 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2420 tsec 6.5380 #GCMRL# 352 dt 36.288000 rms 0.577 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1620 tsec 6.4710 #GCMRL# 353 dt 36.288000 rms 0.577 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1790 tsec 6.4630 #GCMRL# 354 dt 36.288000 rms 0.576 0.025% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2340 tsec 6.5480 #GCMRL# 355 dt 36.288000 rms 0.576 0.023% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2500 tsec 6.5920 #FOTS# QuadFit found better minimum quadopt=(dt=145.152,rms=0.576162) vs oldopt=(dt=103.68,rms=0.57617) #GCMRL# 356 dt 145.152000 rms 0.576 0.000% neg 0 invalid 762 tFOTS 17.8780 tGradient 5.2530 tsec 24.4590 #GCMRL# 357 dt 145.152000 rms 0.576 0.002% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1850 tsec 6.5180 #GCMRL# 358 dt 145.152000 rms 0.576 0.013% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2050 tsec 6.4900 #GCMRL# 359 dt 145.152000 rms 0.576 0.003% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0940 tsec 6.4070 #GCMRL# 360 dt 145.152000 rms 0.576 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.1680 tsec 6.4560 #GCMRL# 361 dt 145.152000 rms 0.576 -0.055% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.2380 tsec 7.7980 #GCMRL# 362 dt 25.920000 rms 0.576 0.019% neg 0 invalid 762 tFOTS 17.8390 tGradient 5.1820 tsec 24.3490 #FOTS# QuadFit found better minimum quadopt=(dt=9.072,rms=0.575741) vs oldopt=(dt=6.48,rms=0.575742) setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.594034 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.592134) vs oldopt=(dt=8,rms=0.592269) #GCMRL# 364 dt 11.200000 rms 0.592 0.320% neg 0 invalid 762 tFOTS 17.9930 tGradient 4.6070 tsec 23.8930 #GCMRL# 365 dt 32.000000 rms 0.591 0.190% neg 0 invalid 762 tFOTS 17.6830 tGradient 4.5570 tsec 23.5630 #GCMRL# 366 dt 128.000000 rms 0.585 1.013% neg 0 invalid 762 tFOTS 17.7760 tGradient 4.4910 tsec 23.5700 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.583335) vs oldopt=(dt=8,rms=0.583664) #GCMRL# 367 dt 11.200000 rms 0.583 0.289% neg 0 invalid 762 tFOTS 17.0050 tGradient 4.5920 tsec 22.9080 #FOTS# QuadFit found better minimum quadopt=(dt=66.1818,rms=0.580853) vs oldopt=(dt=32,rms=0.581335) #GCMRL# 368 dt 66.181818 rms 0.581 0.425% neg 0 invalid 762 tFOTS 17.7670 tGradient 4.5600 tsec 23.6160 #FOTS# QuadFit found better minimum quadopt=(dt=28.2633,rms=0.57605) vs oldopt=(dt=32,rms=0.576191) #GCMRL# 369 dt 28.263270 rms 0.576 0.827% neg 0 invalid 762 tFOTS 17.6600 tGradient 4.3740 tsec 23.3250 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.575572) vs oldopt=(dt=8,rms=0.575622) #GCMRL# 370 dt 11.200000 rms 0.576 0.083% neg 0 invalid 762 tFOTS 17.6390 tGradient 4.4340 tsec 23.3980 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.574694) vs oldopt=(dt=32,rms=0.574825) #GCMRL# 371 dt 44.800000 rms 0.575 0.153% neg 0 invalid 762 tFOTS 17.6820 tGradient 4.4890 tsec 23.4890 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.571918) vs oldopt=(dt=32,rms=0.572306) #GCMRL# 372 dt 44.800000 rms 0.572 0.483% neg 0 invalid 762 tFOTS 17.6130 tGradient 4.4460 tsec 23.3310 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.571501) vs oldopt=(dt=8,rms=0.571534) #GCMRL# 373 dt 11.200000 rms 0.572 0.073% neg 0 invalid 762 tFOTS 17.7030 tGradient 4.4490 tsec 23.4460 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.570991) vs oldopt=(dt=32,rms=0.571026) #GCMRL# 374 dt 44.800000 rms 0.571 0.089% neg 0 invalid 762 tFOTS 16.6550 tGradient 4.3990 tsec 22.3290 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.56857) vs oldopt=(dt=32,rms=0.568837) #GCMRL# 375 dt 44.800000 rms 0.569 0.424% neg 0 invalid 762 tFOTS 17.4770 tGradient 4.4890 tsec 23.2760 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.568192) vs oldopt=(dt=8,rms=0.568211) #GCMRL# 376 dt 11.200000 rms 0.568 0.067% neg 0 invalid 762 tFOTS 17.6160 tGradient 4.4000 tsec 23.3320 #GCMRL# 377 dt 32.000000 rms 0.568 0.058% neg 0 invalid 762 tFOTS 17.7570 tGradient 4.4040 tsec 23.4750 #FOTS# QuadFit found better minimum quadopt=(dt=76.8,rms=0.565495) vs oldopt=(dt=128,rms=0.566259) #GCMRL# 378 dt 76.800000 rms 0.565 0.417% neg 0 invalid 762 tFOTS 17.7120 tGradient 4.4210 tsec 23.4600 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.564913) vs oldopt=(dt=8,rms=0.564947) #GCMRL# 379 dt 11.200000 rms 0.565 0.103% neg 0 invalid 762 tFOTS 17.5900 tGradient 4.4710 tsec 23.3720 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.564792) vs oldopt=(dt=8,rms=0.564808) #GCMRL# 380 dt 11.200000 rms 0.565 0.000% neg 0 invalid 762 tFOTS 17.6650 tGradient 4.3880 tsec 23.3630 #GCMRL# 381 dt 11.200000 rms 0.565 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4270 tsec 5.7300 #GCMRL# 382 dt 11.200000 rms 0.564 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4580 tsec 5.7380 #GCMRL# 383 dt 11.200000 rms 0.564 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4590 tsec 5.7600 #GCMRL# 384 dt 11.200000 rms 0.563 0.150% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4800 tsec 5.7840 #GCMRL# 385 dt 11.200000 rms 0.562 0.177% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4510 tsec 5.7360 #GCMRL# 386 dt 11.200000 rms 0.561 0.187% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4420 tsec 5.7230 #GCMRL# 387 dt 11.200000 rms 0.560 0.181% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4630 tsec 5.7380 #GCMRL# 388 dt 11.200000 rms 0.559 0.180% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4860 tsec 5.7800 #GCMRL# 389 dt 11.200000 rms 0.558 0.182% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5670 tsec 5.8650 #GCMRL# 390 dt 11.200000 rms 0.557 0.188% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5060 tsec 5.7910 #GCMRL# 391 dt 11.200000 rms 0.556 0.027% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4960 tsec 6.3850 #GCMRL# 392 dt 11.200000 rms 0.556 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5340 tsec 5.8300 #GCMRL# 393 dt 11.200000 rms 0.556 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.5220 tsec 5.8390 #GCMRL# 394 dt 11.200000 rms 0.556 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4770 tsec 5.7550 #GCMRL# 395 dt 11.200000 rms 0.555 0.064% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3820 tsec 5.6620 #GCMRL# 396 dt 11.200000 rms 0.555 0.077% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4110 tsec 5.6730 #GCMRL# 397 dt 11.200000 rms 0.554 0.093% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3680 tsec 5.6270 #GCMRL# 398 dt 11.200000 rms 0.554 0.105% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3580 tsec 5.6450 #GCMRL# 399 dt 11.200000 rms 0.554 0.015% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4790 tsec 6.2990 #GCMRL# 400 dt 2.800000 rms 0.554 0.004% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4380 tsec 7.3640 #FOTS# QuadFit found better minimum quadopt=(dt=0.175,rms=0.553575) vs oldopt=(dt=0.125,rms=0.553575) #GCMRL# 401 dt 0.175000 rms 0.554 0.000% neg 0 invalid 762 tFOTS 12.2840 tGradient 4.4680 tsec 18.0700 #GCMRL# 402 dt 0.175000 rms 0.554 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4650 tsec 5.7340 #GCMRL# 403 dt 0.005469 rms 0.554 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4490 tsec 8.9210 #GCAMreg# pass 0 level1 3 level2 1 tsec 560.579 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.554451 #FOTS# QuadFit found better minimum quadopt=(dt=30.4286,rms=0.55222) vs oldopt=(dt=32,rms=0.552238) #GCMRL# 405 dt 30.428571 rms 0.552 0.402% neg 0 invalid 762 tFOTS 16.4230 tGradient 4.3910 tsec 22.1080 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.551881) vs oldopt=(dt=8,rms=0.551951) #GCMRL# 406 dt 11.200000 rms 0.552 0.061% neg 0 invalid 762 tFOTS 17.5340 tGradient 4.3800 tsec 23.2070 #FOTS# QuadFit found better minimum quadopt=(dt=44.8,rms=0.551496) vs oldopt=(dt=32,rms=0.551533) #GCMRL# 407 dt 44.800000 rms 0.551 0.070% neg 0 invalid 762 tFOTS 16.3070 tGradient 4.3570 tsec 21.9510 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.55124) vs oldopt=(dt=32,rms=0.551243) #GCMRL# 408 dt 25.600000 rms 0.551 0.000% neg 0 invalid 762 tFOTS 18.5110 tGradient 4.3690 tsec 24.1910 #GCMRL# 409 dt 25.600000 rms 0.551 0.011% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2670 tsec 5.5210 #GCMRL# 410 dt 25.600000 rms 0.551 0.033% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2490 tsec 5.5100 #GCMRL# 411 dt 25.600000 rms 0.551 0.047% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3010 tsec 5.5710 #GCMRL# 412 dt 25.600000 rms 0.551 0.015% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3120 tsec 5.5800 #GCMRL# 413 dt 25.600000 rms 0.551 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3730 tsec 5.6460 #GCMRL# 414 dt 25.600000 rms 0.550 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2760 tsec 5.5330 #GCMRL# 415 dt 25.600000 rms 0.550 0.098% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2470 tsec 5.5300 #GCMRL# 416 dt 25.600000 rms 0.549 0.115% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2230 tsec 5.4790 #GCMRL# 417 dt 25.600000 rms 0.548 0.123% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1630 tsec 5.4310 #GCMRL# 418 dt 25.600000 rms 0.548 0.067% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2990 tsec 6.1290 #GCMRL# 419 dt 25.600000 rms 0.548 0.082% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2190 tsec 5.4990 #GCMRL# 420 dt 25.600000 rms 0.547 0.083% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1710 tsec 5.4150 #GCMRL# 421 dt 25.600000 rms 0.547 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1360 tsec 5.4200 #GCMRL# 422 dt 25.600000 rms 0.546 0.115% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1600 tsec 5.4080 #GCMRL# 423 dt 25.600000 rms 0.545 0.105% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2560 tsec 5.5080 #GCMRL# 424 dt 25.600000 rms 0.545 0.097% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2720 tsec 5.5400 #GCMRL# 425 dt 25.600000 rms 0.544 0.093% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1900 tsec 5.4680 #GCMRL# 426 dt 25.600000 rms 0.544 0.097% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1400 tsec 5.4010 #GCMRL# 427 dt 25.600000 rms 0.543 0.089% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1900 tsec 5.4500 #GCMRL# 428 dt 25.600000 rms 0.543 0.078% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2630 tsec 5.5490 #GCMRL# 429 dt 25.600000 rms 0.543 0.012% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2000 tsec 6.0420 #GCMRL# 430 dt 25.600000 rms 0.543 0.010% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1700 tsec 5.4610 #GCMRL# 431 dt 32.000000 rms 0.543 0.000% neg 0 invalid 762 tFOTS 16.4860 tGradient 4.2010 tsec 22.0140 #GCMRL# 432 dt 32.000000 rms 0.543 0.014% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1320 tsec 5.3910 #GCMRL# 433 dt 32.000000 rms 0.543 0.015% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2030 tsec 5.4780 #GCMRL# 434 dt 32.000000 rms 0.542 0.024% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1860 tsec 5.4490 #GCMRL# 435 dt 32.000000 rms 0.542 0.037% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1850 tsec 5.4510 #GCMRL# 436 dt 32.000000 rms 0.542 0.038% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1310 tsec 5.4190 #GCMRL# 437 dt 32.000000 rms 0.542 0.039% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1730 tsec 5.4320 #GCMRL# 438 dt 32.000000 rms 0.541 0.053% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1080 tsec 5.3670 #GCMRL# 439 dt 32.000000 rms 0.541 0.054% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2010 tsec 5.4810 #GCMRL# 440 dt 32.000000 rms 0.541 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1150 tsec 5.4020 #GCMRL# 441 dt 32.000000 rms 0.540 0.066% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1770 tsec 5.4470 #GCMRL# 442 dt 32.000000 rms 0.540 0.068% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.0850 tsec 5.3250 #GCMRL# 443 dt 32.000000 rms 0.540 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1420 tsec 5.4470 #GCMRL# 444 dt 32.000000 rms 0.539 0.071% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.1750 tsec 5.4670 #GCMRL# 445 dt 32.000000 rms 0.539 0.075% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2600 tsec 5.5410 #GCMRL# 446 dt 32.000000 rms 0.539 0.065% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2810 tsec 5.5440 #GCMRL# 447 dt 32.000000 rms 0.538 0.062% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2110 tsec 5.4890 #GCMRL# 448 dt 32.000000 rms 0.538 0.072% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2360 tsec 5.4980 #GCMRL# 449 dt 32.000000 rms 0.538 0.058% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2520 tsec 5.5100 #GCMRL# 450 dt 32.000000 rms 0.537 0.057% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2670 tsec 5.5620 #GCMRL# 451 dt 4.000000 rms 0.537 -0.001% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2830 tsec 8.9190 #FOTS# QuadFit found better minimum quadopt=(dt=2.8,rms=0.537263) vs oldopt=(dt=2,rms=0.537264) #GCMRL# 452 dt 2.800000 rms 0.537 0.001% neg 0 invalid 762 tFOTS 14.4270 tGradient 4.2440 tsec 19.9750 #FOTS# QuadFit found better minimum quadopt=(dt=2.8,rms=0.53725) vs oldopt=(dt=2,rms=0.537251) #GCMRL# 453 dt 2.800000 rms 0.537 0.002% neg 0 invalid 762 tFOTS 14.5990 tGradient 4.3460 tsec 20.2250 #FOTS# QuadFit found better minimum quadopt=(dt=0.7,rms=0.537248) vs oldopt=(dt=0.5,rms=0.537248) setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.57541 #GCMRL# 455 dt 0.000000 rms 0.575 0.147% neg 0 invalid 762 tFOTS 16.6460 tGradient 4.0090 tsec 21.9580 #GCMRL# 456 dt 0.150000 rms 0.575 0.000% neg 0 invalid 762 tFOTS 16.4800 tGradient 4.0940 tsec 23.1150 #GCAMreg# pass 0 level1 2 level2 1 tsec 57.865 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.57541 #GCMRL# 458 dt 0.000000 rms 0.575 0.147% neg 0 invalid 762 tFOTS 16.5920 tGradient 3.9740 tsec 21.8790 #GCMRL# 459 dt 0.150000 rms 0.575 0.000% neg 0 invalid 762 tFOTS 16.7740 tGradient 4.0940 tsec 23.3960 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.647501 #FOTS# QuadFit found better minimum quadopt=(dt=1.82996,rms=0.639587) vs oldopt=(dt=1.28,rms=0.640421) #GCMRL# 461 dt 1.829960 rms 0.640 1.222% neg 0 invalid 762 tFOTS 16.3970 tGradient 3.8710 tsec 21.5820 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.639229) vs oldopt=(dt=0.32,rms=0.639295) #GCMRL# 462 dt 0.448000 rms 0.639 0.056% neg 0 invalid 762 tFOTS 20.9000 tGradient 3.9770 tsec 26.1890 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.639147) vs oldopt=(dt=0.32,rms=0.639147) #GCMRL# 463 dt 0.384000 rms 0.639 0.000% neg 0 invalid 762 tFOTS 20.3260 tGradient 3.8540 tsec 25.8220 #GCAMreg# pass 0 level1 1 level2 1 tsec 87.384 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.639894 #FOTS# QuadFit found better minimum quadopt=(dt=0.448,rms=0.638866) vs oldopt=(dt=0.32,rms=0.638921) #GCMRL# 465 dt 0.448000 rms 0.639 0.161% neg 0 invalid 762 tFOTS 18.7550 tGradient 4.4990 tsec 24.5430 #FOTS# QuadFit found better minimum quadopt=(dt=0.384,rms=0.638783) vs oldopt=(dt=0.32,rms=0.638785) #GCMRL# 466 dt 0.384000 rms 0.639 0.000% neg 0 invalid 762 tFOTS 16.6380 tGradient 3.9640 tsec 21.9330 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.55763 #GCMRL# 468 dt 1.280000 rms 0.524 5.984% neg 0 invalid 762 tFOTS 16.6420 tGradient 3.0780 tsec 21.0060 #GCMRL# 469 dt 0.050000 rms 0.524 0.000% neg 0 invalid 762 tFOTS 14.4670 tGradient 3.0040 tsec 18.7950 #GCAMreg# pass 0 level1 0 level2 1 tsec 51.518 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=5.00e-02, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=no blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.525147 #GCMRL# 471 dt 0.000000 rms 0.524 0.175% neg 0 invalid 762 tFOTS 14.3160 tGradient 3.0400 tsec 18.6230 #GCMRL# 472 dt 0.050000 rms 0.524 0.000% neg 0 invalid 762 tFOTS 14.3620 tGradient 3.0220 tsec 19.7960 GCAMregister done in 68.9638 min ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** noneg post Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.517129 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.516055) vs oldopt=(dt=23.12,rms=0.51608) #GCMRL# 474 dt 32.368000 rms 0.516 0.208% neg 0 invalid 762 tFOTS 19.3310 tGradient 7.0980 tsec 27.7020 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.515969) vs oldopt=(dt=23.12,rms=0.515986) #GCMRL# 475 dt 32.368000 rms 0.516 0.000% neg 0 invalid 762 tFOTS 19.4730 tGradient 7.0730 tsec 27.8290 #GCMRL# 476 dt 32.368000 rms 0.516 0.012% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.0230 tsec 8.3150 #GCMRL# 477 dt 32.368000 rms 0.516 0.010% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.0620 tsec 8.3390 #GCAMreg# pass 0 level1 5 level2 1 tsec 87.797 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.516776 #FOTS# QuadFit found better minimum quadopt=(dt=129.472,rms=0.514785) vs oldopt=(dt=92.48,rms=0.514953) #GCMRL# 479 dt 129.472000 rms 0.515 0.385% neg 0 invalid 762 tFOTS 18.5060 tGradient 7.0950 tsec 26.8810 #FOTS# QuadFit found better minimum quadopt=(dt=110.976,rms=0.51464) vs oldopt=(dt=92.48,rms=0.514643) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 480 dt 110.976000 rms 0.515 0.000% neg 0 invalid 762 tFOTS 18.5170 tGradient 7.0260 tsec 28.3580 #GCMRL# 481 dt 110.976000 rms 0.514 0.078% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.0780 tsec 8.3610 #GCMRL# 482 dt 110.976000 rms 0.514 0.067% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.0480 tsec 8.3450 #GCMRL# 483 dt 110.976000 rms 0.514 0.059% neg 0 invalid 762 tFOTS 0.0000 tGradient 7.0980 tsec 8.4210 #FOTS# QuadFit found better minimum quadopt=(dt=221.952,rms=0.513282) vs oldopt=(dt=369.92,rms=0.513329) #GCMRL# 484 dt 221.952000 rms 0.513 0.060% neg 0 invalid 762 tFOTS 18.4740 tGradient 7.0550 tsec 26.7820 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.513219) vs oldopt=(dt=23.12,rms=0.513228) setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.514247 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.512375) vs oldopt=(dt=25.92,rms=0.512467) #GCMRL# 486 dt 36.288000 rms 0.512 0.364% neg 0 invalid 762 tFOTS 19.5960 tGradient 5.0000 tsec 25.8650 #FOTS# QuadFit found better minimum quadopt=(dt=124.416,rms=0.510367) vs oldopt=(dt=103.68,rms=0.510407) #GCMRL# 487 dt 124.416000 rms 0.510 0.392% neg 0 invalid 762 tFOTS 19.5590 tGradient 5.0850 tsec 25.9070 #GCMRL# 488 dt 103.680000 rms 0.509 0.000% neg 0 invalid 762 tFOTS 18.5920 tGradient 5.0580 tsec 24.9690 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 489 dt 103.680000 rms 0.508 0.298% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0300 tsec 7.7910 iter 0, gcam->neg = 3 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 490 dt 103.680000 rms 0.508 -0.139% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0950 tsec 14.8690 #FOTS# QuadFit found better minimum quadopt=(dt=20.736,rms=0.507352) vs oldopt=(dt=25.92,rms=0.507376) #GCMRL# 491 dt 20.736000 rms 0.507 0.094% neg 0 invalid 762 tFOTS 19.7490 tGradient 5.0820 tsec 26.1230 #FOTS# QuadFit found better minimum quadopt=(dt=9.072,rms=0.507246) vs oldopt=(dt=6.48,rms=0.507255) #GCAMreg# pass 0 level1 4 level2 1 tsec 157.534 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.508124 #FOTS# QuadFit found better minimum quadopt=(dt=89.6,rms=0.504664) vs oldopt=(dt=103.68,rms=0.504732) #GCMRL# 493 dt 89.600000 rms 0.505 0.681% neg 0 invalid 762 tFOTS 19.5210 tGradient 5.0030 tsec 25.8070 #FOTS# QuadFit found better minimum quadopt=(dt=36.288,rms=0.503684) vs oldopt=(dt=25.92,rms=0.503819) #GCMRL# 494 dt 36.288000 rms 0.504 0.000% neg 0 invalid 762 tFOTS 19.6230 tGradient 5.0390 tsec 25.9990 #GCMRL# 495 dt 36.288000 rms 0.503 0.077% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0880 tsec 6.3660 #GCMRL# 496 dt 36.288000 rms 0.503 0.126% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.9790 tsec 6.2790 #GCMRL# 497 dt 36.288000 rms 0.502 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.9340 tsec 6.2280 #GCMRL# 498 dt 36.288000 rms 0.501 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0080 tsec 6.2900 #GCMRL# 499 dt 36.288000 rms 0.501 0.141% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.9940 tsec 6.2730 iter 0, gcam->neg = 1 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 500 dt 36.288000 rms 0.500 0.128% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0190 tsec 8.9580 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 501 dt 36.288000 rms 0.499 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0160 tsec 11.8360 iter 0, gcam->neg = 1 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 502 dt 36.288000 rms 0.499 0.110% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.0060 tsec 8.9050 #FOTS# QuadFit found better minimum quadopt=(dt=248.832,rms=0.498476) vs oldopt=(dt=414.72,rms=0.49858) iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 503 dt 248.832000 rms 0.498 0.000% neg 0 invalid 762 tFOTS 19.4060 tGradient 5.0280 tsec 27.3150 setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.500397 iter 0, gcam->neg = 11 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 505 dt 32.000000 rms 0.497 0.665% neg 0 invalid 762 tFOTS 19.5830 tGradient 4.3300 tsec 32.9950 #FOTS# QuadFit found better minimum quadopt=(dt=82.6861,rms=0.491043) vs oldopt=(dt=32,rms=0.492836) iter 0, gcam->neg = 47 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 506 dt 82.686131 rms 0.491 1.184% neg 0 invalid 762 tFOTS 19.5480 tGradient 4.3490 tsec 33.4530 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.489357) vs oldopt=(dt=8,rms=0.489583) iter 0, gcam->neg = 2 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 507 dt 11.200000 rms 0.489 0.371% neg 0 invalid 762 tFOTS 19.5320 tGradient 4.3670 tsec 28.4090 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.488898) vs oldopt=(dt=8,rms=0.488953) iter 0, gcam->neg = 2 after 13 iterations, nbhd size=1, neg = 0 #GCMRL# 508 dt 11.200000 rms 0.489 0.000% neg 0 invalid 762 tFOTS 18.4720 tGradient 4.2690 tsec 32.9080 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 509 dt 11.200000 rms 0.489 0.089% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3610 tsec 7.1350 iter 0, gcam->neg = 5 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 510 dt 11.200000 rms 0.488 0.150% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3630 tsec 9.4690 iter 0, gcam->neg = 10 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 511 dt 11.200000 rms 0.487 0.220% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3270 tsec 9.4100 iter 0, gcam->neg = 17 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 512 dt 11.200000 rms 0.485 0.287% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3510 tsec 12.8710 iter 0, gcam->neg = 6 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 513 dt 11.200000 rms 0.484 0.304% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3740 tsec 8.9000 iter 0, gcam->neg = 9 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 514 dt 11.200000 rms 0.483 0.273% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3730 tsec 8.2630 iter 0, gcam->neg = 20 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 515 dt 11.200000 rms 0.481 0.219% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3720 tsec 12.8500 iter 0, gcam->neg = 17 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 516 dt 11.200000 rms 0.481 0.159% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2830 tsec 12.8920 iter 0, gcam->neg = 20 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 517 dt 11.200000 rms 0.480 0.131% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3420 tsec 11.1630 iter 0, gcam->neg = 25 after 13 iterations, nbhd size=1, neg = 0 #GCMRL# 518 dt 11.200000 rms 0.479 0.120% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2880 tsec 14.7090 iter 0, gcam->neg = 29 after 14 iterations, nbhd size=1, neg = 0 #GCMRL# 519 dt 11.200000 rms 0.479 0.121% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.4690 tsec 18.5630 iter 0, gcam->neg = 24 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 520 dt 11.200000 rms 0.478 0.104% neg 0 invalid 762 tFOTS 0.0000 tGradient 5.6780 tsec 19.4500 #FOTS# QuadFit found better minimum quadopt=(dt=102.4,rms=0.477782) vs oldopt=(dt=128,rms=0.477839) iter 0, gcam->neg = 6 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 521 dt 102.400000 rms 0.478 0.114% neg 0 invalid 762 tFOTS 22.2360 tGradient 5.5160 tsec 37.7010 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.477321) vs oldopt=(dt=32,rms=0.477382) iter 0, gcam->neg = 1 after 8 iterations, nbhd size=1, neg = 0 #GCMRL# 522 dt 25.600000 rms 0.477 0.000% neg 0 invalid 762 tFOTS 20.3090 tGradient 4.3540 tsec 32.2740 #GCAMreg# pass 0 level1 3 level2 1 tsec 356.571 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.478235 #FOTS# QuadFit found better minimum quadopt=(dt=38.1277,rms=0.474481) vs oldopt=(dt=32,rms=0.474508) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 524 dt 38.127660 rms 0.474 0.785% neg 0 invalid 762 tFOTS 20.3900 tGradient 4.3650 tsec 27.5820 #FOTS# QuadFit found better minimum quadopt=(dt=25.2409,rms=0.473157) vs oldopt=(dt=32,rms=0.47331) iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 525 dt 25.240924 rms 0.473 0.279% neg 0 invalid 762 tFOTS 19.4200 tGradient 4.4270 tsec 27.2300 #FOTS# QuadFit found better minimum quadopt=(dt=19.2,rms=0.472583) vs oldopt=(dt=32,rms=0.472695) #GCMRL# 526 dt 19.200000 rms 0.473 0.000% neg 0 invalid 762 tFOTS 19.3110 tGradient 4.3200 tsec 24.9390 #GCMRL# 527 dt 19.200000 rms 0.472 0.096% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.3630 tsec 5.6360 #GCMRL# 528 dt 19.200000 rms 0.472 0.118% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2080 tsec 5.4900 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 529 dt 19.200000 rms 0.471 0.117% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2830 tsec 7.5620 iter 0, gcam->neg = 5 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 530 dt 19.200000 rms 0.471 0.093% neg 0 invalid 762 tFOTS 0.0000 tGradient 4.2470 tsec 8.7590 #FOTS# QuadFit found better minimum quadopt=(dt=25.6,rms=0.470362) vs oldopt=(dt=32,rms=0.470365) setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.480764 #FOTS# QuadFit found better minimum quadopt=(dt=1.008,rms=0.479803) vs oldopt=(dt=0.72,rms=0.479813) #GCMRL# 532 dt 1.008000 rms 0.480 0.200% neg 0 invalid 762 tFOTS 19.3140 tGradient 4.0550 tsec 24.6110 #FOTS# QuadFit found better minimum quadopt=(dt=1.008,rms=0.479778) vs oldopt=(dt=0.72,rms=0.479779) #GCMRL# 533 dt 1.008000 rms 0.480 0.000% neg 0 invalid 762 tFOTS 19.2110 tGradient 3.9750 tsec 24.4350 #GCMRL# 534 dt 1.008000 rms 0.480 0.000% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.9980 tsec 5.2440 #GCAMreg# pass 0 level1 2 level2 1 tsec 66.868 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.480708 #FOTS# QuadFit found better minimum quadopt=(dt=5.41176,rms=0.479331) vs oldopt=(dt=2.88,rms=0.479429) #GCMRL# 536 dt 5.411765 rms 0.479 0.286% neg 0 invalid 762 tFOTS 19.3890 tGradient 4.0280 tsec 24.6660 #FOTS# QuadFit found better minimum quadopt=(dt=4.8,rms=0.479131) vs oldopt=(dt=2.88,rms=0.479168) iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 537 dt 4.800000 rms 0.479 0.000% neg 0 invalid 762 tFOTS 19.0170 tGradient 3.9690 tsec 26.2780 #GCMRL# 538 dt 4.800000 rms 0.479 0.028% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.8560 tsec 5.1100 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.49252 #GCMRL# 540 dt 0.000000 rms 0.492 0.196% neg 0 invalid 762 tFOTS 18.3880 tGradient 3.7070 tsec 23.3610 #GCAMreg# pass 0 level1 1 level2 1 tsec 53.848 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.49252 #GCMRL# 542 dt 0.000000 rms 0.492 0.196% neg 0 invalid 762 tFOTS 18.0920 tGradient 3.7790 tsec 23.1460 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.471428 #FOTS# QuadFit found better minimum quadopt=(dt=1.93186,rms=0.44744) vs oldopt=(dt=1.28,rms=0.450283) iter 0, gcam->neg = 888 after 15 iterations, nbhd size=1, neg = 0 #GCMRL# 544 dt 1.931859 rms 0.448 4.875% neg 0 invalid 762 tFOTS 18.9400 tGradient 2.9520 tsec 33.2060 #FOTS# QuadFit found better minimum quadopt=(dt=0.028,rms=0.44836) vs oldopt=(dt=0.02,rms=0.448371) #GCMRL# 545 dt 0.028000 rms 0.448 0.000% neg 0 invalid 762 tFOTS 19.1070 tGradient 2.9550 tsec 23.3570 #GCAMreg# pass 0 level1 0 level2 1 tsec 68.053 sigma 0.5 l_jacobian=1.00 l_label=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.449448 #GCMRL# 547 dt 0.080000 rms 0.448 0.286% neg 0 invalid 762 tFOTS 19.1450 tGradient 2.9540 tsec 23.3480 #GCMRL# 548 dt 0.005000 rms 0.448 0.000% neg 0 invalid 762 tFOTS 19.1090 tGradient 2.9460 tsec 23.3340 label assignment complete, 0 changed (0.00%) GCAMregister done in 23.2639 min Starting GCAMcomputeMaxPriorLabels() Morphing with label term set to 0 ******************************* Starting GCAMregister() label assignment complete, 0 changed (0.00%) npasses = 1, nlevels = 6 #pass# 1 of 1 ************************ enabling zero nodes setting smoothness cost coefficient to 0.008 #GCAMreg# pass 0 level1 5 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.436177 #GCAMreg# pass 0 level1 5 level2 1 tsec 32.366 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.01 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=256, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.436177 #FOTS# QuadFit found better minimum quadopt=(dt=32.368,rms=0.436167) vs oldopt=(dt=23.12,rms=0.436169) #GCMRL# 551 dt 32.368000 rms 0.436 0.002% neg 0 invalid 762 tFOTS 18.5740 tGradient 6.2880 tsec 26.0980 #GCMRL# 552 dt 5.780000 rms 0.436 0.000% neg 0 invalid 762 tFOTS 18.3100 tGradient 6.2560 tsec 25.8360 setting smoothness cost coefficient to 0.031 #GCAMreg# pass 0 level1 4 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.43632 #GCAMreg# pass 0 level1 4 level2 1 tsec 29.915 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.03 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=64, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.43632 #FOTS# QuadFit found better minimum quadopt=(dt=62.208,rms=0.436116) vs oldopt=(dt=103.68,rms=0.436161) #GCMRL# 555 dt 62.208000 rms 0.436 0.047% neg 0 invalid 762 tFOTS 17.4900 tGradient 4.1530 tsec 22.8630 #FOTS# QuadFit found better minimum quadopt=(dt=124.416,rms=0.435924) vs oldopt=(dt=103.68,rms=0.435929) #GCMRL# 556 dt 124.416000 rms 0.436 0.000% neg 0 invalid 762 tFOTS 17.5350 tGradient 4.2450 tsec 23.0300 setting smoothness cost coefficient to 0.118 #GCAMreg# pass 0 level1 3 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.436509 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.43613) vs oldopt=(dt=8,rms=0.436158) #GCMRL# 558 dt 11.200000 rms 0.436 0.087% neg 0 invalid 762 tFOTS 18.4390 tGradient 3.5140 tsec 23.1600 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.435978) vs oldopt=(dt=8,rms=0.435991) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 559 dt 11.200000 rms 0.436 0.000% neg 0 invalid 762 tFOTS 18.5160 tGradient 3.5030 tsec 24.7060 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 560 dt 11.200000 rms 0.436 0.026% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5730 tsec 10.0600 iter 0, gcam->neg = 6 after 7 iterations, nbhd size=1, neg = 0 #GCAMreg# pass 0 level1 3 level2 1 tsec 75.179 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.12 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=16, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.435866 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 #GCMRL# 562 dt 32.000000 rms 0.433 0.549% neg 0 invalid 762 tFOTS 18.4590 tGradient 3.5600 tsec 27.9400 #FOTS# QuadFit found better minimum quadopt=(dt=21.5104,rms=0.432653) vs oldopt=(dt=32,rms=0.432911) iter 0, gcam->neg = 1 after 8 iterations, nbhd size=1, neg = 0 #GCMRL# 563 dt 21.510373 rms 0.433 0.000% neg 0 invalid 762 tFOTS 18.3750 tGradient 3.5510 tsec 29.0210 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 #GCMRL# 564 dt 21.510373 rms 0.432 0.130% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5580 tsec 10.0910 iter 0, gcam->neg = 5 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 565 dt 21.510373 rms 0.431 0.171% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5710 tsec 7.3460 iter 0, gcam->neg = 13 after 9 iterations, nbhd size=1, neg = 0 #GCMRL# 566 dt 21.510373 rms 0.430 0.217% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5230 tsec 11.0910 iter 0, gcam->neg = 18 after 3 iterations, nbhd size=0, neg = 0 #GCMRL# 567 dt 21.510373 rms 0.430 0.157% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5560 tsec 7.8380 iter 0, gcam->neg = 22 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 568 dt 21.510373 rms 0.429 0.184% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4980 tsec 7.2220 iter 0, gcam->neg = 18 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 569 dt 21.510373 rms 0.428 0.132% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4990 tsec 12.4110 iter 0, gcam->neg = 18 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 570 dt 21.510373 rms 0.428 0.129% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4910 tsec 12.5030 iter 0, gcam->neg = 16 after 11 iterations, nbhd size=1, neg = 0 #GCMRL# 571 dt 21.510373 rms 0.427 0.098% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4660 tsec 11.9510 iter 0, gcam->neg = 13 after 10 iterations, nbhd size=1, neg = 0 #GCMRL# 572 dt 21.510373 rms 0.427 0.120% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4880 tsec 11.3970 iter 0, gcam->neg = 14 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 573 dt 21.510373 rms 0.427 0.102% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4600 tsec 8.1150 #FOTS# QuadFit found better minimum quadopt=(dt=11.2,rms=0.426409) vs oldopt=(dt=8,rms=0.426433) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 574 dt 11.200000 rms 0.426 0.000% neg 0 invalid 762 tFOTS 17.7400 tGradient 3.4660 tsec 23.8300 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 575 dt 11.200000 rms 0.426 0.013% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4920 tsec 6.6530 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 576 dt 11.200000 rms 0.426 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.5000 tsec 6.1170 iter 0, gcam->neg = 3 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 577 dt 11.200000 rms 0.426 0.019% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4290 tsec 12.4390 iter 0, gcam->neg = 1 after 4 iterations, nbhd size=0, neg = 0 #GCMRL# 578 dt 11.200000 rms 0.426 0.021% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.4820 tsec 8.1820 iter 0, gcam->neg = 10 after 9 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 0.400 #GCAMreg# pass 0 level1 2 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.43078 #FOTS# QuadFit found better minimum quadopt=(dt=2.304,rms=0.430662) vs oldopt=(dt=2.88,rms=0.430663) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 580 dt 2.304000 rms 0.431 0.027% neg 0 invalid 762 tFOTS 18.3250 tGradient 3.2730 tsec 24.2370 #FOTS# QuadFit found better minimum quadopt=(dt=1.008,rms=0.430647) vs oldopt=(dt=0.72,rms=0.430649) iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 #GCMRL# 581 dt 1.008000 rms 0.431 0.000% neg 0 invalid 762 tFOTS 17.1550 tGradient 3.2960 tsec 23.5780 #GCAMreg# pass 0 level1 2 level2 1 tsec 59.34 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=0.40 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=4, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.43066 #FOTS# QuadFit found better minimum quadopt=(dt=9.2973,rms=0.430089) vs oldopt=(dt=11.52,rms=0.430119) iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 583 dt 9.297297 rms 0.430 0.133% neg 0 invalid 762 tFOTS 18.2780 tGradient 3.2310 tsec 24.0860 #FOTS# QuadFit found better minimum quadopt=(dt=19.2,rms=0.429469) vs oldopt=(dt=11.52,rms=0.429563) iter 0, gcam->neg = 9 after 6 iterations, nbhd size=0, neg = 0 #GCMRL# 584 dt 19.200000 rms 0.429 0.144% neg 0 invalid 762 tFOTS 18.1070 tGradient 3.2430 tsec 27.0100 #FOTS# QuadFit found better minimum quadopt=(dt=32.5664,rms=0.428586) vs oldopt=(dt=46.08,rms=0.428746) iter 0, gcam->neg = 43 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 585 dt 32.566372 rms 0.429 0.205% neg 0 invalid 762 tFOTS 18.0770 tGradient 3.2080 tsec 30.1770 #FOTS# QuadFit found better minimum quadopt=(dt=8.97842,rms=0.427939) vs oldopt=(dt=11.52,rms=0.427991) iter 0, gcam->neg = 5 after 8 iterations, nbhd size=1, neg = 0 #GCMRL# 586 dt 8.978417 rms 0.428 0.000% neg 0 invalid 762 tFOTS 17.8480 tGradient 3.2100 tsec 28.0040 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 #GCMRL# 587 dt 8.978417 rms 0.428 0.029% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2460 tsec 5.8690 iter 0, gcam->neg = 5 after 2 iterations, nbhd size=0, neg = 0 #GCMRL# 588 dt 8.978417 rms 0.428 0.050% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2150 tsec 6.8640 iter 0, gcam->neg = 4 after 7 iterations, nbhd size=0, neg = 0 #GCMRL# 589 dt 8.978417 rms 0.427 0.099% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.1710 tsec 9.4980 iter 0, gcam->neg = 22 after 12 iterations, nbhd size=1, neg = 0 #GCMRL# 590 dt 8.978417 rms 0.427 0.098% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2320 tsec 12.2850 iter 0, gcam->neg = 18 after 16 iterations, nbhd size=1, neg = 0 #GCMRL# 591 dt 8.978417 rms 0.426 0.104% neg 0 invalid 762 tFOTS 0.0000 tGradient 3.2350 tsec 14.4960 iter 0, gcam->neg = 50 after 5 iterations, nbhd size=0, neg = 0 setting smoothness cost coefficient to 1.000 #GCAMreg# pass 0 level1 1 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.432796 #FOTS# QuadFit found better minimum quadopt=(dt=-0.000189887,rms=0.432796) vs oldopt=(dt=7.8125e-05,rms=0.432796) #GCMRL# 593 dt -0.000190 rms 0.433 0.000% neg 0 invalid 762 tFOTS 23.0740 tGradient 3.0760 tsec 27.3460 #GCAMreg# pass 0 level1 1 level2 1 tsec 55.801 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=1.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=1, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.432796 resetting metric properties... setting smoothness cost coefficient to 2.000 #GCAMreg# pass 0 level1 0 level2 0 tsec 0 sigma 2 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=2.0,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=2.000... GCAMRegisterLevel(): init RMS 0.421573 #FOTS# QuadFit found better minimum quadopt=(dt=1.15286,rms=0.412508) vs oldopt=(dt=1.28,rms=0.412587) iter 0, gcam->neg = 651 after 17 iterations, nbhd size=1, neg = 0 #GCMRL# 596 dt 1.152860 rms 0.414 1.842% neg 0 invalid 762 tFOTS 17.9240 tGradient 2.2930 tsec 31.8190 #FOTS# QuadFit found better minimum quadopt=(dt=2.73438e-05,rms=0.413809) vs oldopt=(dt=1.95313e-05,rms=0.413809) #GCMRL# 597 dt 0.000027 rms 0.414 0.000% neg 0 invalid 762 tFOTS 22.5520 tGradient 2.2960 tsec 26.0890 #GCAMreg# pass 0 level1 0 level2 1 tsec 68.483 sigma 0.5 l_jacobian=1.00 l_log_likelihood=0.20 l_smoothness=2.00 tol=2.50e-01, dt=5.00e-02, exp_k=20.0, momentum=0.90, levels=6, niter=500, lbl_dist=10.00, avgs=0, sigma=0.5,type=2, relabel=0, neg=yes blurring input image with Gaussian with sigma=0.500... GCAMRegisterLevel(): init RMS 0.413809 #FOTS# QuadFit found better minimum quadopt=(dt=0.112,rms=0.413566) vs oldopt=(dt=0.08,rms=0.413592) #GCMRL# 599 dt 0.112000 rms 0.414 0.059% neg 0 invalid 762 tFOTS 17.5210 tGradient 2.2820 tsec 20.9560 #FOTS# QuadFit found better minimum quadopt=(dt=0.096,rms=0.413487) vs oldopt=(dt=0.08,rms=0.413487) #GCMRL# 600 dt 0.096000 rms 0.413 0.000% neg 0 invalid 762 tFOTS 17.8070 tGradient 2.3090 tsec 21.3350 #GCMRL# 601 dt 0.096000 rms 0.413 0.010% neg 0 invalid 762 tFOTS 0.0000 tGradient 2.3170 tsec 3.5210 GCAMregister done in 15.4009 min writing output transformation to transforms/talairach.m3z... GCAMwrite Calls to gcamLogLikelihoodEnergy 3943 tmin = 19.2329 Calls to gcamLabelEnergy 3385 tmin = 1.38697 Calls to gcamJacobianEnergy 3943 tmin = 12.9831 Calls to gcamSmoothnessEnergy 3943 tmin = 12.3853 Calls to gcamLogLikelihoodTerm 603 tmin = 5.96128 Calls to gcamLabelTerm 550 tmin = 8.51408 Calls to gcamJacobianTerm 603 tmin = 11.2756 Calls to gcamSmoothnessTerm 603 tmin = 3.40907 Calls to gcamComputeGradient 603 tmin = 51.9023 Calls to gcamComputeMetricProperties 5963 tmin = 20.7795 mri_ca_register took 2 hours, 16 minutes and 45 seconds. #VMPC# mri_ca_register VmPeak 2332568 FSRUNTIME@ mri_ca_register 2.2792 hours 1 threads @#@FSTIME 2022:04:18:01:36:18 mri_ca_register N 9 e 8205.35 S 36.84 U 8168.45 P 99% M 1566116 F 0 R 3698051 W 0 c 3597 w 484 I 0 O 62168 L 25.23 25.13 25.15 @#@FSLOADPOST 2022:04:18:03:53:04 mri_ca_register N 9 25.15 25.16 25.17 #-------------------------------------- #@# SubCort Seg Mon Apr 18 03:53:04 CDT 2022 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz sysname Linux hostname hopper machine x86_64 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca aseg.auto_noCCseg.mgz relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 == Number of threads available to for OpenMP = 1 == reading 1 input volumes reading classifier array from /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca reading input volume from norm.mgz average std[0] = 7.2 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 10.11 Atlas used for the 3D morph was /usr/local/pkg/freesurfer7.2/average/RB_all_2020-01-02.gca average std = 7.2 using min determinant for regularization = 5.2 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15521 (20) mri peak = 0.06433 ( 4) Left_Lateral_Ventricle (4): linear fit = 0.17 x + 0.0 (532 voxels, overlap=0.289) Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (532 voxels, peak = 3), gca=8.0 gca peak = 0.20380 (13) mri peak = 0.08897 ( 8) Right_Lateral_Ventricle (43): linear fit = 0.56 x + 0.0 (522 voxels, overlap=0.489) Right_Lateral_Ventricle (43): linear fit = 0.56 x + 0.0 (522 voxels, peak = 7), gca=7.2 gca peak = 0.26283 (96) mri peak = 0.11717 (96) Right_Pallidum (52): linear fit = 0.99 x + 0.0 (1490 voxels, overlap=1.006) Right_Pallidum (52): linear fit = 0.99 x + 0.0 (1490 voxels, peak = 95), gca=94.6 gca peak = 0.15814 (97) mri peak = 0.05811 (90) Left_Pallidum (13): linear fit = 0.96 x + 0.0 (1721 voxels, overlap=1.022) Left_Pallidum (13): linear fit = 0.96 x + 0.0 (1721 voxels, peak = 94), gca=93.6 gca peak = 0.27624 (56) mri peak = 0.14540 (63) Right_Hippocampus (53): linear fit = 1.09 x + 0.0 (2255 voxels, overlap=0.478) Right_Hippocampus (53): linear fit = 1.09 x + 0.0 (2255 voxels, peak = 61), gca=60.8 gca peak = 0.28723 (59) mri peak = 0.14030 (67) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (2137 voxels, overlap=0.016) Left_Hippocampus (17): linear fit = 1.13 x + 0.0 (2137 voxels, peak = 67), gca=67.0 gca peak = 0.07623 (103) mri peak = 0.08447 (110) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (49948 voxels, overlap=0.460) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (49948 voxels, peak = 109), gca=108.7 gca peak = 0.07837 (105) mri peak = 0.07925 (111) Left_Cerebral_White_Matter (2): linear fit = 1.07 x + 0.0 (49089 voxels, overlap=0.421) Left_Cerebral_White_Matter (2): linear fit = 1.07 x + 0.0 (49089 voxels, peak = 112), gca=111.8 gca peak = 0.10165 (58) mri peak = 0.05312 (63) Left_Cerebral_Cortex (3): linear fit = 1.08 x + 0.0 (107758 voxels, overlap=0.803) Left_Cerebral_Cortex (3): linear fit = 1.08 x + 0.0 (107758 voxels, peak = 62), gca=62.4 gca peak = 0.11113 (58) mri peak = 0.05262 (63) Right_Cerebral_Cortex (42): linear fit = 1.08 x + 0.0 (104342 voxels, overlap=0.870) Right_Cerebral_Cortex (42): linear fit = 1.08 x + 0.0 (104342 voxels, peak = 62), gca=62.4 gca peak = 0.27796 (67) mri peak = 0.11142 (81) Right_Caudate (50): linear fit = 1.17 x + 0.0 (2136 voxels, overlap=0.021) Right_Caudate (50): linear fit = 1.17 x + 0.0 (2136 voxels, peak = 79), gca=78.7 gca peak = 0.14473 (69) mri peak = 0.14360 (78) Left_Caudate (11): linear fit = 1.05 x + 0.0 (1734 voxels, overlap=0.505) Left_Caudate (11): linear fit = 1.05 x + 0.0 (1734 voxels, peak = 73), gca=72.8 gca peak = 0.14301 (56) mri peak = 0.06196 (58) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (68019 voxels, overlap=0.999) Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (68019 voxels, peak = 57), gca=57.4 gca peak = 0.14610 (55) mri peak = 0.06136 (56) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (66692 voxels, overlap=0.997) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (66692 voxels, peak = 54), gca=54.2 gca peak = 0.16309 (85) mri peak = 0.06161 (83) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (10646 voxels, overlap=0.966) Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (10646 voxels, peak = 84), gca=83.7 gca peak = 0.15172 (84) mri peak = 0.06118 (82) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (10007 voxels, overlap=0.988) Right_Cerebellum_White_Matter (46): linear fit = 1.03 x + 0.0 (10007 voxels, peak = 87), gca=86.9 gca peak = 0.30461 (58) mri peak = 0.14532 (68) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (1071 voxels, overlap=0.045) Left_Amygdala (18): linear fit = 1.16 x + 0.0 (1071 voxels, peak = 68), gca=67.6 gca peak = 0.32293 (57) mri peak = 0.17198 (63) Right_Amygdala (54): linear fit = 1.10 x + 0.0 (1095 voxels, overlap=0.295) Right_Amygdala (54): linear fit = 1.10 x + 0.0 (1095 voxels, peak = 62), gca=62.4 gca peak = 0.11083 (90) mri peak = 0.06680 (88) Left_Thalamus (10): linear fit = 0.99 x + 0.0 (7373 voxels, overlap=0.973) Left_Thalamus (10): linear fit = 0.99 x + 0.0 (7373 voxels, peak = 89), gca=88.7 gca peak = 0.11393 (83) mri peak = 0.07701 (83) Right_Thalamus (49): linear fit = 1.04 x + 0.0 (7141 voxels, overlap=0.923) Right_Thalamus (49): linear fit = 1.04 x + 0.0 (7141 voxels, peak = 87), gca=86.7 gca peak = 0.08575 (81) mri peak = 0.16115 (82) Left_Putamen (12): linear fit = 1.03 x + 0.0 (3186 voxels, overlap=0.577) Left_Putamen (12): linear fit = 1.03 x + 0.0 (3186 voxels, peak = 84), gca=83.8 gca peak = 0.08618 (78) mri peak = 0.15144 (80) Right_Putamen (51): linear fit = 1.01 x + 0.0 (3912 voxels, overlap=0.713) Right_Putamen (51): linear fit = 1.01 x + 0.0 (3912 voxels, peak = 79), gca=79.2 gca peak = 0.08005 (78) mri peak = 0.05786 (90) Brain_Stem (16): linear fit = 1.13 x + 0.0 (12770 voxels, overlap=0.492) Brain_Stem (16): linear fit = 1.13 x + 0.0 (12770 voxels, peak = 89), gca=88.5 gca peak = 0.12854 (88) mri peak = 0.05252 (100) Right_VentralDC (60): linear fit = 1.13 x + 0.0 (2258 voxels, overlap=0.720) Right_VentralDC (60): linear fit = 1.13 x + 0.0 (2258 voxels, peak = 100), gca=99.9 gca peak = 0.15703 (87) mri peak = 0.06291 (96) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (2196 voxels, overlap=0.930) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (2196 voxels, peak = 97), gca=97.0 gca peak = 0.17522 (25) mri peak = 0.12903 (11) Third_Ventricle (14): linear fit = 0.40 x + 0.0 (207 voxels, overlap=0.050) Third_Ventricle (14): linear fit = 0.40 x + 0.0 (207 voxels, peak = 10), gca=9.9 gca peak = 0.17113 (14) mri peak = 0.21981 ( 4) Fourth_Ventricle (15): linear fit = 0.19 x + 0.0 (511 voxels, overlap=0.023) Fourth_Ventricle (15): linear fit = 0.19 x + 0.0 (511 voxels, peak = 3), gca=2.6 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.16627 (28) gca peak Third_Ventricle = 0.17522 (25) gca peak Fourth_Ventricle = 0.17113 (14) gca peak CSF = 0.20346 (36) gca peak Left_Accumbens_area = 0.70646 (62) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89917 (53) gca peak Left_choroid_plexus = 0.11689 (35) gca peak Right_Inf_Lat_Vent = 0.25504 (23) gca peak Right_Accumbens_area = 0.31650 (65) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13275 (38) gca peak Fifth_Ventricle = 0.60973 (33) gca peak WM_hypointensities = 0.11013 (77) gca peak non_WM_hypointensities = 0.11354 (41) gca peak Optic_Chiasm = 0.51646 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.11 x + 0.0 estimating mean wm scale to be 1.06 x + 0.0 estimating mean csf scale to be 0.48 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.32569 ( 7) mri peak = 0.06433 ( 4) Left_Lateral_Ventricle (4): linear fit = 0.44 x + 0.0 (532 voxels, overlap=0.358) Left_Lateral_Ventricle (4): linear fit = 0.44 x + 0.0 (532 voxels, peak = 3), gca=3.0 gca peak = 0.24477 ( 7) mri peak = 0.08897 ( 8) Right_Lateral_Ventricle (43): linear fit = 0.85 x + 0.0 (522 voxels, overlap=0.966) Right_Lateral_Ventricle (43): linear fit = 0.85 x + 0.0 (522 voxels, peak = 6), gca=5.9 gca peak = 0.22534 (94) mri peak = 0.11717 (96) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (1490 voxels, overlap=1.002) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (1490 voxels, peak = 94), gca=93.5 gca peak = 0.18508 (93) mri peak = 0.05811 (90) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (1721 voxels, overlap=1.007) Left_Pallidum (13): linear fit = 1.10 x + 0.0 (1721 voxels, peak = 102), gca=101.8 gca peak = 0.26867 (60) mri peak = 0.14540 (63) Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (2255 voxels, overlap=1.000) Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (2255 voxels, peak = 62), gca=61.5 gca peak = 0.32807 (64) mri peak = 0.14030 (67) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (2137 voxels, overlap=1.001) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (2137 voxels, peak = 64), gca=64.0 gca peak = 0.07415 (109) mri peak = 0.08447 (110) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (49948 voxels, overlap=0.707) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (49948 voxels, peak = 109), gca=109.0 gca peak = 0.07459 (112) mri peak = 0.07925 (111) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (49089 voxels, overlap=0.719) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (49089 voxels, peak = 112), gca=112.0 gca peak = 0.09100 (62) mri peak = 0.05312 (63) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (107758 voxels, overlap=0.964) Left_Cerebral_Cortex (3): linear fit = 1.00 x + 0.0 (107758 voxels, peak = 62), gca=62.0 gca peak = 0.10676 (63) mri peak = 0.05262 (63) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (104342 voxels, overlap=0.967) Right_Cerebral_Cortex (42): linear fit = 1.00 x + 0.0 (104342 voxels, peak = 63), gca=63.0 gca peak = 0.21907 (78) mri peak = 0.11142 (81) Right_Caudate (50): linear fit = 0.99 x + 0.0 (2136 voxels, overlap=1.002) Right_Caudate (50): linear fit = 0.99 x + 0.0 (2136 voxels, peak = 77), gca=76.8 gca peak = 0.14936 (82) mri peak = 0.14360 (78) Left_Caudate (11): linear fit = 1.00 x + 0.0 (1734 voxels, overlap=0.766) Left_Caudate (11): linear fit = 1.00 x + 0.0 (1734 voxels, peak = 82), gca=82.0 gca peak = 0.13050 (57) mri peak = 0.06196 (58) Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (68019 voxels, overlap=1.000) Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (68019 voxels, peak = 56), gca=56.1 gca peak = 0.14143 (55) mri peak = 0.06136 (56) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (66692 voxels, overlap=0.998) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (66692 voxels, peak = 55), gca=55.0 gca peak = 0.15717 (83) mri peak = 0.06161 (83) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (10646 voxels, overlap=0.953) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (10646 voxels, peak = 88), gca=87.6 gca peak = 0.14393 (87) mri peak = 0.06118 (82) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (10007 voxels, overlap=0.993) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (10007 voxels, peak = 87), gca=86.6 gca peak = 0.22718 (66) mri peak = 0.14532 (68) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (1071 voxels, overlap=1.007) Left_Amygdala (18): linear fit = 1.00 x + 0.0 (1071 voxels, peak = 66), gca=66.0 gca peak = 0.29930 (62) mri peak = 0.17198 (63) Right_Amygdala (54): linear fit = 1.00 x + 0.0 (1095 voxels, overlap=1.010) Right_Amygdala (54): linear fit = 1.00 x + 0.0 (1095 voxels, peak = 62), gca=62.0 gca peak = 0.10620 (87) mri peak = 0.06680 (88) Left_Thalamus (10): linear fit = 1.01 x + 0.0 (7373 voxels, overlap=0.951) Left_Thalamus (10): linear fit = 1.01 x + 0.0 (7373 voxels, peak = 88), gca=88.3 gca peak = 0.09509 (87) mri peak = 0.07701 (83) Right_Thalamus (49): linear fit = 0.99 x + 0.0 (7141 voxels, overlap=0.984) Right_Thalamus (49): linear fit = 0.99 x + 0.0 (7141 voxels, peak = 86), gca=85.7 gca peak = 0.08071 (86) mri peak = 0.16115 (82) Left_Putamen (12): linear fit = 1.00 x + 0.0 (3186 voxels, overlap=0.676) Left_Putamen (12): linear fit = 1.00 x + 0.0 (3186 voxels, peak = 86), gca=86.0 gca peak = 0.08742 (77) mri peak = 0.15144 (80) Right_Putamen (51): linear fit = 1.00 x + 0.0 (3912 voxels, overlap=0.677) Right_Putamen (51): linear fit = 1.00 x + 0.0 (3912 voxels, peak = 77), gca=77.0 gca peak = 0.07404 (89) mri peak = 0.05786 (90) Brain_Stem (16): linear fit = 1.01 x + 0.0 (12770 voxels, overlap=0.913) Brain_Stem (16): linear fit = 1.01 x + 0.0 (12770 voxels, peak = 90), gca=90.3 gca peak = 0.11372 (100) mri peak = 0.05252 (100) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (2258 voxels, overlap=0.948) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (2258 voxels, peak = 100), gca=100.5 gca peak = 0.14938 (97) mri peak = 0.06291 (96) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (2196 voxels, overlap=0.987) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (2196 voxels, peak = 97), gca=97.5 gca peak = 0.30100 (13) mri peak = 0.12903 (11) Third_Ventricle (14): linear fit = 0.81 x + 0.0 (207 voxels, overlap=0.939) Third_Ventricle (14): linear fit = 0.81 x + 0.0 (207 voxels, peak = 11), gca=10.6 gca peak = 0.31628 ( 7) mri peak = 0.21981 ( 4) Fourth_Ventricle (15): linear fit = 0.44 x + 0.0 (511 voxels, overlap=0.785) Fourth_Ventricle (15): linear fit = 0.44 x + 0.0 (511 voxels, peak = 3), gca=3.0 gca peak Unknown = 0.94777 ( 0) gca peak Left_Inf_Lat_Vent = 0.19610 (32) gca peak Fourth_Ventricle = 0.31628 ( 7) gca peak CSF = 0.31856 (17) gca peak Left_Accumbens_area = 0.53034 (65) gca peak Left_undetermined = 1.00000 (28) gca peak Left_vessel = 0.89837 (53) gca peak Left_choroid_plexus = 0.11689 (35) gca peak Right_Inf_Lat_Vent = 0.25810 (25) gca peak Right_Accumbens_area = 0.29318 (76) gca peak Right_vessel = 0.77268 (52) gca peak Right_choroid_plexus = 0.13275 (38) gca peak Fifth_Ventricle = 0.60735 (16) gca peak WM_hypointensities = 0.10793 (81) gca peak non_WM_hypointensities = 0.14581 (43) gca peak Optic_Chiasm = 0.55058 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 0.70 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 72379 voxels changed in iteration 0 of unlikely voxel relabeling 180 voxels changed in iteration 1 of unlikely voxel relabeling 14 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 39309 gm and wm labels changed (%41 to gray, %59 to white out of all changed labels) 485 hippocampal voxels changed. 0 amygdala voxels changed. Reclassifying using Gibbs Priors pass 1: 81772 changed. image ll: -2.124, PF=0.500 pass 2: 23641 changed. image ll: -2.124, PF=0.500 pass 3: 8686 changed. pass 4: 3804 changed. 44724 voxels changed in iteration 0 of unlikely voxel relabeling 228 voxels changed in iteration 1 of unlikely voxel relabeling 15 voxels changed in iteration 2 of unlikely voxel relabeling 1 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling 7573 voxels changed in iteration 0 of unlikely voxel relabeling 149 voxels changed in iteration 1 of unlikely voxel relabeling 3 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 9361 voxels changed in iteration 0 of unlikely voxel relabeling 109 voxels changed in iteration 1 of unlikely voxel relabeling 6 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 7612 voxels changed in iteration 0 of unlikely voxel relabeling 77 voxels changed in iteration 1 of unlikely voxel relabeling 1 voxels changed in iteration 2 of unlikely voxel relabeling 7 voxels changed in iteration 3 of unlikely voxel relabeling 0 voxels changed in iteration 4 of unlikely voxel relabeling !!!!!!!!! ventricle segment 0 with volume 346 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 8 with volume 2185 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 0 with volume 110 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 4 with volume 2556 above threshold 100 - not erasing !!!!!!!!!! !!!!!!!!! ventricle segment 4 with volume 156 above threshold 100 - not erasing !!!!!!!!!! writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 3416.298178 mri_ca_label stimesec 36.272532 mri_ca_label ru_maxrss 3078220 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 4246720 mri_ca_label ru_majflt 0 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 62160 mri_ca_label ru_oublock 944 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 44 mri_ca_label ru_nivcsw 2056 auto-labeling took 57 minutes and 33 seconds. @#@FSTIME 2022:04:18:03:53:04 mri_ca_label N 10 e 3452.74 S 36.46 U 3416.29 P 100% M 3078220 F 0 R 4246732 W 0 c 2056 w 45 I 62160 O 944 L 25.15 25.16 25.17 @#@FSLOADPOST 2022:04:18:04:50:37 mri_ca_label N 10 25.32 25.28 25.24 #-------------------------------------- #@# CC Seg Mon Apr 18 04:50:37 CDT 2022 mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/cc_up.lta MOD1707_Y2_a_fs7p2 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/transforms/cc_up.lta reading aseg from /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/aseg.auto_noCCseg.mgz reading norm from /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/norm.mgz MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 34648 voxels in left wm, 61193 in right wm, xrange [156, 164] searching rotation angles z=[-7 7], y=[-9 5] searching scale 1 Z rot -7.0 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.5 searching scale 1 Z rot -6.2 searching scale 1 Z rot -6.0 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.5 searching scale 1 Z rot -5.2 searching scale 1 Z rot -5.0 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.5 searching scale 1 Z rot -4.2 searching scale 1 Z rot -4.0 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.5 searching scale 1 Z rot -3.2 searching scale 1 Z rot -3.0 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.5 searching scale 1 Z rot -2.2 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.2 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.0 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.5 searching scale 1 Z rot 6.8 global minimum found at slice 160.4, rotations (-1.51, 0.03) final transformation (x=160.4, yr=-1.512, zr=0.026): 0.99965 -0.00045 -0.02638 -27.97527; 0.00045 1.00000 -0.00001 -25.07065; 0.02638 0.00000 0.99965 -38.17504; 0.00000 0.00000 0.00000 1.00000; updating x range to be [126, 130] in xformed coordinates best xformed slice 128 min_x_fornix = 141 min_x_fornix = 146 min_x_fornix = 146 min_x_fornix = 146 min_x_fornix = 147 cc center is found at 128 153 162 eigenvectors: 0.00090 -0.01073 0.99994; 0.20611 -0.97847 -0.01068; 0.97853 0.20611 0.00133; MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab error in mid anterior detected - correcting... writing aseg with callosum to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/aseg.auto.mgz... corpus callosum segmentation took 1.1 minutes #VMPC# mri_cc VmPeak 854036 mri_cc done @#@FSTIME 2022:04:18:04:50:37 mri_cc N 7 e 64.33 S 0.91 U 63.41 P 99% M 659912 F 0 R 572499 W 0 c 46 w 52 I 0 O 928 L 25.32 25.28 25.24 @#@FSLOADPOST 2022:04:18:04:51:41 mri_cc N 7 25.19 25.25 25.23 #-------------------------------------- #@# Merge ASeg Mon Apr 18 04:51:41 CDT 2022 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Mon Apr 18 04:51:41 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_normalize -seed 1234 -mprage -noconform -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz setting seed for random number genererator to 1234 assuming input volume is MGH (Van der Kouwe) MP-RAGE not interpolating and embedding volume to be 256^3... using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading mri_src from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... NOT doing gentle normalization with control points/label processing with aseg MRIcopyHeader(): source has ctab removing outliers in the aseg WM... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 655 control points removed MRIcopyHeader(): source has ctab Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 109 gm peak at 67 (67), valley at 21 (21) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 68 (68), valley at 22 (22) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 5 minutes and 4 seconds. @#@FSTIME 2022:04:18:04:51:41 mri_normalize N 10 e 307.47 S 2.94 U 304.50 P 99% M 2352992 F 0 R 1241186 W 0 c 271 w 124 I 0 O 4248 L 25.19 25.25 25.23 @#@FSLOADPOST 2022:04:18:04:56:49 mri_normalize N 10 25.31 25.26 25.22 #-------------------------------------------- #@# Mask BFS Mon Apr 18 04:56:49 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 2572630 voxels in mask (pct= 7.85) Writing masked volume to brain.finalsurfs.mgz...done. @#@FSTIME 2022:04:18:04:56:49 mri_mask N 5 e 2.83 S 0.06 U 2.72 P 98% M 137876 F 0 R 33182 W 0 c 9 w 44 I 4240 O 4168 L 25.31 25.26 25.22 @#@FSLOADPOST 2022:04:18:04:56:52 mri_mask N 5 25.28 25.25 25.22 #-------------------------------------------- #@# WM Segmentation Mon Apr 18 04:56:52 CDT 2022 AntsDenoiseImageFs -i brain.mgz -o antsdn.brain.mgz @#@FSTIME 2022:04:18:04:56:52 AntsDenoiseImageFs N 4 e 66.51 S 0.61 U 65.87 P 99% M 679248 F 0 R 168569 W 0 c 42 w 67 I 0 O 4216 L 25.28 25.25 25.22 @#@FSLOADPOST 2022:04:18:04:57:58 AntsDenoiseImageFs N 4 25.13 25.22 25.21 mri_segment -wsizemm 13 -mprage antsdn.brain.mgz wm.seg.mgz wsizemm = 13, voxres = 0.799996, wsize = 16 Widening wm low from 89 to 79 assuming input volume is MGH (Van der Kouwe) MP-RAGE wm mean: 110 wsize: 16 wm low: 79 wm hi: 125 gray low: 30 gray hi: 99 Doing initial trinary intensity segmentation Using local statistics to label ambiguous voxels Autodetecting stats Computing class statistics for intensity windows... CCS WM (103.0): 102.9 +- 5.7 [79.0 --> 125.0] CCS GM (75.0) : 74.3 +- 9.6 [30.0 --> 95.0] white_mean 102.875 white_sigma 5.74853 gray_mean 74.3065 gray_sigma 9.61566 setting bottom of white matter range wm_low to 83.9 setting top of gray matter range gray_hi to 93.5 wm_low 83.9222 wm_hi 125 gray_low 30 gray_hi 93.5378 Redoing initial intensity segmentation... Recomputing local statistics to label ambiguous voxels... wm_low 83.9222 wm_hi 125 gray_low 30 gray_hi 93.5378 using local geometry to label remaining ambiguous voxels... polvwsize = 5, polvlen = 3, gray_hi = 93.5378, wm_low = 83.9222 MRIcpolvMedianCurveSegment(): wsize=5, len=3, gmhi=93.5378, wmlow=83.9222 191070 voxels processed (0.58%) 83671 voxels white (0.26%) 107399 voxels non-white (0.33%) Reclassifying voxels using Gaussian border classifier niter=1 MRIreclassify(): wm_low=78.9222, gray_hi=93.5378, wsize=16 361784 voxels tested (1.10%) 65489 voxels changed (0.20%) 87080 multi-scale searches (0.27%) Recovering bright white MRIrecoverBrightWhite() wm_low 83.9222 wm_hi 125 slack 5.74853 pct_thresh 0.33 intensity_thresh 130.749 nvox_thresh 8.58 323 voxels tested (0.00%) 265 voxels changed (0.00%) removing voxels with positive offset direction... MRIremoveWrongDirection() wsize=3, lowthr=78.9222, hithr=93.5378 smoothing input volume with sigma = 0.250 119483 voxels tested (0.36%) 17689 voxels changed (0.05%) thicken = 1 removing 1-dimensional structures... MRIremove1dStructures(): max_iter=10000, thresh=2, WM_MIN_VAL=5 4501 sparsely connected voxels removed in 1 iterations thickening thin strands.... thickness 4 nsegments 20 wm_hi 125 2265 diagonally connected voxels added... MRIthickenThinWMStrands(): thickness=4, nsegments=20 20 segments, 6014 filled MRIfindBrightNonWM(): 664 bright non-wm voxels segmented. MRIfilterMorphology() WM_MIN_VAL=5, DIAGONAL_FILL=230 white matter segmentation took 2.4 minutes writing output to wm.seg.mgz... @#@FSTIME 2022:04:18:04:57:58 mri_segment N 5 e 144.41 S 0.62 U 143.77 P 99% M 247436 F 0 R 587714 W 0 c 176 w 40 I 4216 O 1040 L 25.13 25.22 25.21 @#@FSLOADPOST 2022:04:18:05:00:23 mri_segment N 5 25.04 25.15 25.18 mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.86 minutes reading wm segmentation from wm.seg.mgz... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 0 voxels added to wm to prevent paths from MTL structures to cortex 7652 additional wm voxels added 0 additional wm voxels added SEG EDIT: 77986 voxels turned on, 48811 voxels turned off. propagating editing to output volume from wm.seg.mgz writing edited volume to wm.asegedit.mgz.... @#@FSTIME 2022:04:18:05:00:23 mri_edit_wm_with_aseg N 5 e 51.57 S 0.92 U 50.58 P 99% M 886532 F 0 R 614772 W 0 c 51 w 91 I 0 O 944 L 25.04 25.15 25.18 @#@FSLOADPOST 2022:04:18:05:01:14 mri_edit_wm_with_aseg N 5 25.27 25.19 25.19 mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 47 found - 47 modified | TOTAL: 47 pass 2 (xy+): 0 found - 47 modified | TOTAL: 47 pass 1 (xy-): 68 found - 68 modified | TOTAL: 115 pass 2 (xy-): 0 found - 68 modified | TOTAL: 115 pass 1 (yz+): 55 found - 55 modified | TOTAL: 170 pass 2 (yz+): 0 found - 55 modified | TOTAL: 170 pass 1 (yz-): 27 found - 27 modified | TOTAL: 197 pass 2 (yz-): 0 found - 27 modified | TOTAL: 197 pass 1 (xz+): 42 found - 42 modified | TOTAL: 239 pass 2 (xz+): 0 found - 42 modified | TOTAL: 239 pass 1 (xz-): 31 found - 31 modified | TOTAL: 270 pass 2 (xz-): 0 found - 31 modified | TOTAL: 270 Iteration Number : 1 pass 1 (+++): 21 found - 21 modified | TOTAL: 21 pass 2 (+++): 0 found - 21 modified | TOTAL: 21 pass 1 (+++): 13 found - 13 modified | TOTAL: 34 pass 2 (+++): 0 found - 13 modified | TOTAL: 34 pass 1 (+++): 23 found - 23 modified | TOTAL: 57 pass 2 (+++): 0 found - 23 modified | TOTAL: 57 pass 1 (+++): 16 found - 16 modified | TOTAL: 73 pass 2 (+++): 0 found - 16 modified | TOTAL: 73 Iteration Number : 1 pass 1 (++): 103 found - 103 modified | TOTAL: 103 pass 2 (++): 0 found - 103 modified | TOTAL: 103 pass 1 (+-): 194 found - 194 modified | TOTAL: 297 pass 2 (+-): 0 found - 194 modified | TOTAL: 297 pass 1 (--): 85 found - 85 modified | TOTAL: 382 pass 2 (--): 0 found - 85 modified | TOTAL: 382 pass 1 (-+): 152 found - 152 modified | TOTAL: 534 pass 2 (-+): 0 found - 152 modified | TOTAL: 534 Iteration Number : 2 pass 1 (xy+): 4 found - 4 modified | TOTAL: 4 pass 2 (xy+): 0 found - 4 modified | TOTAL: 4 pass 1 (xy-): 5 found - 5 modified | TOTAL: 9 pass 2 (xy-): 0 found - 5 modified | TOTAL: 9 pass 1 (yz+): 7 found - 7 modified | TOTAL: 16 pass 2 (yz+): 0 found - 7 modified | TOTAL: 16 pass 1 (yz-): 3 found - 3 modified | TOTAL: 19 pass 2 (yz-): 0 found - 3 modified | TOTAL: 19 pass 1 (xz+): 7 found - 7 modified | TOTAL: 26 pass 2 (xz+): 0 found - 7 modified | TOTAL: 26 pass 1 (xz-): 1 found - 1 modified | TOTAL: 27 pass 2 (xz-): 0 found - 1 modified | TOTAL: 27 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 4 found - 4 modified | TOTAL: 4 pass 2 (+-): 0 found - 4 modified | TOTAL: 4 pass 1 (--): 2 found - 2 modified | TOTAL: 6 pass 2 (--): 0 found - 2 modified | TOTAL: 6 pass 1 (-+): 4 found - 4 modified | TOTAL: 10 pass 2 (-+): 0 found - 4 modified | TOTAL: 10 Iteration Number : 3 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 1 found - 1 modified | TOTAL: 2 pass 2 (yz+): 0 found - 1 modified | TOTAL: 2 pass 1 (yz-): 0 found - 0 modified | TOTAL: 2 pass 1 (xz+): 0 found - 0 modified | TOTAL: 2 pass 1 (xz-): 1 found - 1 modified | TOTAL: 3 pass 2 (xz-): 0 found - 1 modified | TOTAL: 3 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 1 found - 1 modified | TOTAL: 2 pass 2 (+-): 0 found - 1 modified | TOTAL: 2 pass 1 (--): 0 found - 0 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 919 (out of 637610: 0.144132) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done @#@FSTIME 2022:04:18:05:01:14 mri_pretess N 4 e 5.35 S 0.06 U 5.26 P 99% M 104724 F 0 R 24918 W 0 c 5 w 40 I 0 O 952 L 25.27 25.19 25.19 @#@FSLOADPOST 2022:04:18:05:01:20 mri_pretess N 4 25.32 25.20 25.19 #-------------------------------------------- #@# Fill Mon Apr 18 05:01:20 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.presurf.mgz -ctab /usr/local/pkg/freesurfer7.2/SubCorticalMassLUT.txt wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.presurf.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.13098 0.01340 -0.00243 -26.72841; -0.01239 1.23740 -0.06420 -46.39951; -0.00019 0.02231 1.10359 -38.91833; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.13098 0.01340 -0.00243 -26.72841; -0.01239 1.23740 -0.06420 -46.39951; -0.00019 0.02231 1.10359 -38.91833; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.presurf.mgz removing CC from segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Looking for area (min, max) = (546, 2188) area[0] = 1395 (min = 546, max = 2188), aspect = 0.41 (min = 0.10, max = 0.75) no need to search using seed (157, 152, 188), TAL = (2.4, 22.4, 6.4) talairach voxel to voxel transform 0.88408 -0.00960 0.00139 23.23897; 0.00885 0.80720 0.04698 39.51891; -0.00002 -0.01632 0.90518 34.47026; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (157, 152, 188) --> (2.4, 22.4, 6.4) done. filling took 2.5 minutes talairach cc position changed to (2.40, 22.40, 6.40) Erasing brainstem...done. seed_search_size = 12, min_neighbors = 5 search rh wm seed point around talairach space:(20.40, 22.40, 6.40) SRC: (140.95, 172.24, 202.16) search lh wm seed point around talairach space (-15.60, 22.40, 6.40), SRC: (180.73, 172.64, 202.16) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram for separating WM into two hemispheres ... Find the largest connected component for each hemisphere ... Embedding colortable mri_fill done, writing output to filled.mgz... @#@FSTIME 2022:04:18:05:01:20 mri_fill N 10 e 151.41 S 2.52 U 148.79 P 99% M 1563880 F 0 R 845497 W 0 c 180 w 35 I 0 O 344 L 25.32 25.20 25.19 @#@FSLOADPOST 2022:04:18:05:03:51 mri_fill N 10 25.35 25.25 25.21 cp filled.mgz filled.auto.mgz #-------------------------------------------- #@# Tessellate lh Mon Apr 18 05:03:51 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 9 found - 9 modified | TOTAL: 10 pass 2 (yz+): 0 found - 9 modified | TOTAL: 10 pass 1 (yz-): 7 found - 7 modified | TOTAL: 17 pass 2 (yz-): 0 found - 7 modified | TOTAL: 17 pass 1 (xz+): 1 found - 1 modified | TOTAL: 18 pass 2 (xz+): 0 found - 1 modified | TOTAL: 18 pass 1 (xz-): 2 found - 2 modified | TOTAL: 20 pass 2 (xz-): 0 found - 2 modified | TOTAL: 20 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 1 found - 1 modified | TOTAL: 1 pass 2 (+++): 0 found - 1 modified | TOTAL: 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 1 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 1 found - 1 modified | TOTAL: 1 pass 2 (--): 0 found - 1 modified | TOTAL: 1 pass 1 (-+): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 22 (out of 310166: 0.007093) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2022:04:18:05:03:51 mri_pretess N 4 e 3.08 S 0.03 U 3.03 P 99% M 72332 F 0 R 16797 W 0 c 6 w 44 I 0 O 336 L 25.35 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:03:54 mri_pretess N 4 25.32 25.25 25.21 mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix.predec 7.2.0 7.2.0 slice 70: 154 vertices, 179 faces slice 80: 3684 vertices, 3859 faces slice 90: 9948 vertices, 10198 faces slice 100: 18324 vertices, 18642 faces slice 110: 27881 vertices, 28256 faces slice 120: 40465 vertices, 40928 faces slice 130: 52259 vertices, 52672 faces slice 140: 66433 vertices, 66940 faces slice 150: 81549 vertices, 82057 faces slice 160: 94400 vertices, 94899 faces slice 170: 106890 vertices, 107330 faces slice 180: 117729 vertices, 118188 faces slice 190: 127115 vertices, 127501 faces slice 200: 135028 vertices, 135356 faces slice 210: 142682 vertices, 143079 faces slice 220: 150117 vertices, 150422 faces slice 230: 155974 vertices, 156251 faces slice 240: 160901 vertices, 161130 faces slice 250: 163372 vertices, 163477 faces slice 260: 163456 vertices, 163534 faces slice 270: 163456 vertices, 163534 faces slice 280: 163456 vertices, 163534 faces slice 290: 163456 vertices, 163534 faces slice 300: 163456 vertices, 163534 faces slice 310: 163456 vertices, 163534 faces slice 320: 163456 vertices, 163534 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix.predec using vox2ras matrix: -0.80000 0.00000 0.00000 127.99936; 0.00000 0.00000 0.80000 -127.99936; 0.00000 -0.80000 0.00000 127.99936; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2022:04:18:05:03:55 mri_tessellate N 3 e 2.42 S 0.03 U 2.35 P 98% M 57316 F 0 R 13501 W 0 c 4 w 199 I 0 O 7672 L 25.32 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:03:57 mri_tessellate N 3 25.32 25.25 25.21 rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix.predec ../surf/lh.orig.nofix.predec counting number of connected components... 163456 voxel in cpt #1: X=-78 [v=163456,e=490602,f=327068] located at (-26.608366, -5.793466, -0.597428) For the whole surface: X=-78 [v=163456,e=490602,f=327068] One single component has been found nothing to do done @#@FSTIME 2022:04:18:05:03:57 mris_extract_main_component N 2 e 1.18 S 0.19 U 0.93 P 94% M 323856 F 0 R 85830 W 0 c 4 w 206 I 0 O 11504 L 25.32 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:03:58 mris_extract_main_component N 2 25.32 25.25 25.21 mris_remesh --desired-face-area 0.5 --input ../surf/lh.orig.nofix.predec --output ../surf/lh.orig.nofix iters = 5 target face area = 0.5 average source face area = 0.319997 decimation level = 0.639994 target vertices = 104611 Remesher::remeshBKV( 5 , 104611 ) vcount = 163456 vnum: 104611 area = 104661 avel: 0.910452 s0 = 0.859857 st: 1.07483 Targetn: 151687 points: 163456 Targetl: 0.943327 avg l: 0.910452 points: 163456 Maxndown:12945 Points: 163456 avg edge: 0.862371 Targetn: 139918 points: 163456 Targetl: 0.976202 avg l: 0.862371 points: 163461 Maxndown:25897 Points: 137564 avg edge: 0.910108 Targetn: 128149 points: 137564 Targetl: 1.00908 avg l: 0.910108 points: 137644 Maxndown:10444 Points: 127200 avg edge: 0.931744 Targetn: 116380 points: 127200 Targetl: 1.04195 avg l: 0.931744 points: 127212 Maxndown:11915 Points: 115297 avg edge: 0.964156 Targetn: 104611 points: 115297 Targetl: 1.07483 avg l: 0.964156 points: 115320 Maxndown:10709 Points: 104611 avg edge: 0.999467 Final Points: 104611 final avg edge: 0.999467 avg qual before : 0.866025 after: 0.964538 Removing intersections removing intersecting faces 000: 6 intersecting terminating search with 0 intersecting Remeshed surface quality stats nv0 = 163456 nv = 104611 0.639995 Area 209378 0.42472 0.05309 0.034927 0.9596 Corner 628134 60.00000 8.60662 11.734192 151.7770 Edge 314067 0.99942 0.10456 0.220190 1.6642 Hinge 314067 34.82295 30.41085 0.000001 171.6818 mris_remesh done @#@FSTIME 2022:04:18:05:03:58 mris_remesh N 6 e 12.93 S 0.48 U 12.40 P 99% M 641212 F 0 R 239934 W 0 c 17 w 120 I 0 O 7368 L 25.32 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:04:11 mris_remesh N 6 25.25 25.24 25.20 #-------------------------------------------- #@# Tessellate rh Mon Apr 18 05:04:11 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 2 found - 2 modified | TOTAL: 2 pass 2 (xy+): 0 found - 2 modified | TOTAL: 2 pass 1 (xy-): 0 found - 0 modified | TOTAL: 2 pass 1 (yz+): 14 found - 14 modified | TOTAL: 16 pass 2 (yz+): 0 found - 14 modified | TOTAL: 16 pass 1 (yz-): 6 found - 6 modified | TOTAL: 22 pass 2 (yz-): 0 found - 6 modified | TOTAL: 22 pass 1 (xz+): 1 found - 1 modified | TOTAL: 23 pass 2 (xz+): 0 found - 1 modified | TOTAL: 23 pass 1 (xz-): 1 found - 1 modified | TOTAL: 24 pass 2 (xz-): 0 found - 1 modified | TOTAL: 24 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 1 found - 1 modified | TOTAL: 1 pass 2 (--): 0 found - 1 modified | TOTAL: 1 pass 1 (-+): 1 found - 1 modified | TOTAL: 2 pass 2 (-+): 0 found - 1 modified | TOTAL: 2 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 27 (out of 308836: 0.008743) Ambiguous edge configurations... mri_pretess done @#@FSTIME 2022:04:18:05:04:11 mri_pretess N 4 e 3.59 S 0.07 U 3.51 P 99% M 72200 F 0 R 25114 W 0 c 6 w 24 I 0 O 336 L 25.25 25.24 25.20 @#@FSLOADPOST 2022:04:18:05:04:15 mri_pretess N 4 25.31 25.25 25.21 mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix.predec 7.2.0 7.2.0 slice 70: 603 vertices, 681 faces slice 80: 4766 vertices, 4944 faces slice 90: 11011 vertices, 11263 faces slice 100: 19013 vertices, 19360 faces slice 110: 28197 vertices, 28601 faces slice 120: 38678 vertices, 39065 faces slice 130: 50941 vertices, 51297 faces slice 140: 63135 vertices, 63646 faces slice 150: 76897 vertices, 77406 faces slice 160: 90425 vertices, 90914 faces slice 170: 103973 vertices, 104401 faces slice 180: 115418 vertices, 115834 faces slice 190: 124974 vertices, 125329 faces slice 200: 132637 vertices, 132997 faces slice 210: 140770 vertices, 141124 faces slice 220: 148325 vertices, 148604 faces slice 230: 153992 vertices, 154273 faces slice 240: 159063 vertices, 159295 faces slice 250: 161716 vertices, 161821 faces slice 260: 161806 vertices, 161882 faces slice 270: 161806 vertices, 161882 faces slice 280: 161806 vertices, 161882 faces slice 290: 161806 vertices, 161882 faces slice 300: 161806 vertices, 161882 faces slice 310: 161806 vertices, 161882 faces slice 320: 161806 vertices, 161882 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix.predec using vox2ras matrix: -0.80000 0.00000 0.00000 127.99936; 0.00000 0.00000 0.80000 -127.99936; 0.00000 -0.80000 0.00000 127.99936; 0.00000 0.00000 0.00000 1.00000; @#@FSTIME 2022:04:18:05:04:15 mri_tessellate N 3 e 2.59 S 0.03 U 2.51 P 98% M 57076 F 0 R 13451 W 0 c 3 w 235 I 0 O 7592 L 25.31 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:04:18 mri_tessellate N 3 25.31 25.25 25.21 rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix.predec ../surf/rh.orig.nofix.predec counting number of connected components... 161806 voxel in cpt #1: X=-76 [v=161806,e=485646,f=323764] located at (25.496027, -5.120473, 0.424398) For the whole surface: X=-76 [v=161806,e=485646,f=323764] One single component has been found nothing to do done @#@FSTIME 2022:04:18:05:04:18 mris_extract_main_component N 2 e 1.22 S 0.16 U 1.00 P 95% M 320980 F 0 R 84928 W 0 c 3 w 302 I 0 O 11384 L 25.31 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:04:19 mris_extract_main_component N 2 25.31 25.25 25.21 mris_remesh --desired-face-area 0.5 --input ../surf/rh.orig.nofix.predec --output ../surf/rh.orig.nofix iters = 5 target face area = 0.5 average source face area = 0.319997 decimation level = 0.639994 target vertices = 103555 Remesher::remeshBKV( 5 , 103555 ) vcount = 161806 vnum: 103555 area = 103603 avel: 0.910452 s0 = 0.859854 st: 1.07482 Targetn: 150155 points: 161806 Targetl: 0.943326 avg l: 0.910452 points: 161806 Maxndown:12816 Points: 161806 avg edge: 0.863048 Targetn: 138505 points: 161806 Targetl: 0.9762 avg l: 0.863048 points: 161826 Maxndown:25653 Points: 136173 avg edge: 0.910879 Targetn: 126855 points: 136173 Targetl: 1.00907 avg l: 0.910879 points: 136233 Maxndown:10315 Points: 125918 avg edge: 0.932743 Targetn: 115205 points: 125918 Targetl: 1.04195 avg l: 0.932743 points: 125929 Maxndown:11796 Points: 114133 avg edge: 0.965348 Targetn: 103555 points: 114133 Targetl: 1.07482 avg l: 0.965348 points: 114153 Maxndown:10598 Points: 103555 avg edge: 1.00064 Final Points: 103555 final avg edge: 1.00064 avg qual before : 0.866025 after: 0.964616 Removing intersections removing intersecting faces 000: 6 intersecting terminating search with 0 intersecting Remeshed surface quality stats nv0 = 161806 nv = 103555 0.639995 Area 207262 0.42565 0.05359 0.066132 0.9542 Corner 621786 60.00000 8.63762 15.110400 144.6723 Edge 310893 1.00058 0.10526 0.320217 1.6414 Hinge 310893 34.76171 30.46098 0.000000 177.7182 mris_remesh done @#@FSTIME 2022:04:18:05:04:19 mris_remesh N 6 e 12.91 S 0.53 U 12.35 P 99% M 637212 F 0 R 242828 W 0 c 17 w 147 I 0 O 7288 L 25.31 25.25 25.21 @#@FSLOADPOST 2022:04:18:05:04:32 mris_remesh N 6 25.24 25.24 25.20 #-------------------------------------------- #@# Smooth1 lh Mon Apr 18 05:04:32 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2022:04:18:05:04:32 mris_smooth N 5 e 2.41 S 0.21 U 2.16 P 98% M 165516 F 0 R 75364 W 0 c 7 w 120 I 0 O 7368 L 25.24 25.24 25.20 @#@FSLOADPOST 2022:04:18:05:04:34 mris_smooth N 5 25.24 25.24 25.20 #-------------------------------------------- #@# Smooth1 rh Mon Apr 18 05:04:34 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2022:04:18:05:04:34 mris_smooth N 5 e 2.21 S 0.12 U 1.99 P 95% M 164104 F 0 R 48759 W 0 c 2 w 188 I 0 O 7288 L 25.14 25.21 25.20 @#@FSLOADPOST 2022:04:18:05:04:37 mris_smooth N 5 25.14 25.21 25.20 #-------------------------------------------- #@# Inflation1 lh Mon Apr 18 05:04:37 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 41.3 mm, total surface area = 54976 mm^2 resetting # of iterations to 13 for highres volume step 000: RMS=0.158 (target=0.015) step 005: RMS=0.122 (target=0.015) step 010: RMS=0.092 (target=0.015) step 015: RMS=0.080 (target=0.015) step 020: RMS=0.071 (target=0.015) step 025: RMS=0.063 (target=0.015) step 030: RMS=0.056 (target=0.015) step 035: RMS=0.051 (target=0.015) step 040: RMS=0.049 (target=0.015) step 045: RMS=0.048 (target=0.015) step 050: RMS=0.047 (target=0.015) step 055: RMS=0.045 (target=0.015) step 060: RMS=0.044 (target=0.015) step 065: RMS=0.044 (target=0.015) step 070: RMS=0.044 (target=0.015) step 075: RMS=0.044 (target=0.015) writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes inflation complete. Not saving sulc mris_inflate utimesec 19.942235 mris_inflate stimesec 1.119676 mris_inflate ru_maxrss 165528 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 559508 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 7368 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 184 mris_inflate ru_nivcsw 28 @#@FSTIME 2022:04:18:05:04:37 mris_inflate N 3 e 21.11 S 1.12 U 19.94 P 99% M 165528 F 0 R 559509 W 0 c 28 w 185 I 0 O 7368 L 25.14 25.21 25.20 @#@FSLOADPOST 2022:04:18:05:04:58 mris_inflate N 3 25.10 25.20 25.19 #-------------------------------------------- #@# Inflation1 rh Mon Apr 18 05:04:58 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 40.9 mm, total surface area = 54378 mm^2 resetting # of iterations to 13 for highres volume step 000: RMS=0.158 (target=0.015) step 005: RMS=0.122 (target=0.015) step 010: RMS=0.094 (target=0.015) step 015: RMS=0.083 (target=0.015) step 020: RMS=0.073 (target=0.015) step 025: RMS=0.067 (target=0.015) step 030: RMS=0.061 (target=0.015) step 035: RMS=0.057 (target=0.015) step 040: RMS=0.054 (target=0.015) step 045: RMS=0.052 (target=0.015) step 050: RMS=0.051 (target=0.015) step 055: RMS=0.051 (target=0.015) step 060: RMS=0.050 (target=0.015) step 065: RMS=0.050 (target=0.015) step 070: RMS=0.050 (target=0.015) step 075: RMS=0.050 (target=0.015) writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.3 minutes inflation complete. Not saving sulc mris_inflate utimesec 19.744291 mris_inflate stimesec 0.944013 mris_inflate ru_maxrss 164140 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 545739 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 7288 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 254 mris_inflate ru_nivcsw 34 @#@FSTIME 2022:04:18:05:04:58 mris_inflate N 3 e 20.75 S 0.95 U 19.74 P 99% M 164140 F 0 R 545740 W 0 c 34 w 255 I 0 O 7288 L 25.10 25.20 25.19 @#@FSLOADPOST 2022:04:18:05:05:19 mris_inflate N 3 25.20 25.22 25.19 #-------------------------------------------- #@# QSphere lh Mon Apr 18 05:05:19 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 scaling brain by 0.352... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.11 +- 0.63 (0.00-->8.70) (max @ vno 40579 --> 41499) face area 0.03 +- 0.04 (-0.38-->0.72) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.492, avgs=0 005/300: dt: 0.9000, rms radial error=176.235, avgs=0 010/300: dt: 0.9000, rms radial error=175.683, avgs=0 015/300: dt: 0.9000, rms radial error=174.958, avgs=0 020/300: dt: 0.9000, rms radial error=174.132, avgs=0 025/300: dt: 0.9000, rms radial error=173.247, avgs=0 030/300: dt: 0.9000, rms radial error=172.330, avgs=0 035/300: dt: 0.9000, rms radial error=171.395, avgs=0 040/300: dt: 0.9000, rms radial error=170.451, avgs=0 045/300: dt: 0.9000, rms radial error=169.504, avgs=0 050/300: dt: 0.9000, rms radial error=168.557, avgs=0 055/300: dt: 0.9000, rms radial error=167.611, avgs=0 060/300: dt: 0.9000, rms radial error=166.668, avgs=0 065/300: dt: 0.9000, rms radial error=165.734, avgs=0 070/300: dt: 0.9000, rms radial error=164.806, avgs=0 075/300: dt: 0.9000, rms radial error=163.883, avgs=0 080/300: dt: 0.9000, rms radial error=162.964, avgs=0 085/300: dt: 0.9000, rms radial error=162.050, avgs=0 090/300: dt: 0.9000, rms radial error=161.141, avgs=0 095/300: dt: 0.9000, rms radial error=160.237, avgs=0 100/300: dt: 0.9000, rms radial error=159.338, avgs=0 105/300: dt: 0.9000, rms radial error=158.443, avgs=0 110/300: dt: 0.9000, rms radial error=157.554, avgs=0 115/300: dt: 0.9000, rms radial error=156.669, avgs=0 120/300: dt: 0.9000, rms radial error=155.788, avgs=0 125/300: dt: 0.9000, rms radial error=154.913, avgs=0 130/300: dt: 0.9000, rms radial error=154.042, avgs=0 135/300: dt: 0.9000, rms radial error=153.176, avgs=0 140/300: dt: 0.9000, rms radial error=152.315, avgs=0 145/300: dt: 0.9000, rms radial error=151.459, avgs=0 150/300: dt: 0.9000, rms radial error=150.607, avgs=0 155/300: dt: 0.9000, rms radial error=149.759, avgs=0 160/300: dt: 0.9000, rms radial error=148.917, avgs=0 165/300: dt: 0.9000, rms radial error=148.079, avgs=0 170/300: dt: 0.9000, rms radial error=147.245, avgs=0 175/300: dt: 0.9000, rms radial error=146.417, avgs=0 180/300: dt: 0.9000, rms radial error=145.592, avgs=0 185/300: dt: 0.9000, rms radial error=144.774, avgs=0 190/300: dt: 0.9000, rms radial error=143.960, avgs=0 195/300: dt: 0.9000, rms radial error=143.151, avgs=0 200/300: dt: 0.9000, rms radial error=142.347, avgs=0 205/300: dt: 0.9000, rms radial error=141.546, avgs=0 210/300: dt: 0.9000, rms radial error=140.751, avgs=0 215/300: dt: 0.9000, rms radial error=139.959, avgs=0 220/300: dt: 0.9000, rms radial error=139.172, avgs=0 225/300: dt: 0.9000, rms radial error=138.389, avgs=0 230/300: dt: 0.9000, rms radial error=137.611, avgs=0 235/300: dt: 0.9000, rms radial error=136.837, avgs=0 240/300: dt: 0.9000, rms radial error=136.067, avgs=0 245/300: dt: 0.9000, rms radial error=135.302, avgs=0 250/300: dt: 0.9000, rms radial error=134.540, avgs=0 255/300: dt: 0.9000, rms radial error=133.783, avgs=0 260/300: dt: 0.9000, rms radial error=133.030, avgs=0 265/300: dt: 0.9000, rms radial error=132.281, avgs=0 270/300: dt: 0.9000, rms radial error=131.536, avgs=0 275/300: dt: 0.9000, rms radial error=130.796, avgs=0 280/300: dt: 0.9000, rms radial error=130.060, avgs=0 285/300: dt: 0.9000, rms radial error=129.327, avgs=0 290/300: dt: 0.9000, rms radial error=128.599, avgs=0 295/300: dt: 0.9000, rms radial error=127.875, avgs=0 300/300: dt: 0.9000, rms radial error=127.155, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 11698.54 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00056 epoch 2 (K=40.0), pass 1, starting sse = 1723.77 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00049 epoch 3 (K=160.0), pass 1, starting sse = 146.91 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.18/18 = 0.01001 epoch 4 (K=640.0), pass 1, starting sse = 10.15 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.07/16 = 0.00431 final distance error %100000.00 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.0309 hours FSRUNTIME@ mris_sphere 0.0309 hours 1 threads #VMPC# mris_sphere VmPeak 457752 mris_sphere done @#@FSTIME 2022:04:18:05:05:19 mris_sphere N 9 e 111.18 S 4.91 U 106.20 P 99% M 169956 F 0 R 2570465 W 0 c 149 w 129 I 0 O 7368 L 25.20 25.22 25.19 @#@FSLOADPOST 2022:04:18:05:07:10 mris_sphere N 9 25.41 25.27 25.21 #-------------------------------------------- #@# QSphere rh Mon Apr 18 05:07:10 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_sphere -q -p 6 -a 128 -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. limitting unfolding to 6 passes using n_averages = 128 setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 scaling brain by 0.346... inflating... projecting onto sphere... surface projected - minimizing metric distortion... vertex spacing 1.12 +- 0.62 (0.00-->10.37) (max @ vno 33592 --> 34831) face area 0.03 +- 0.04 (-0.28-->1.12) Entering MRISinflateToSphere() inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=177.231, avgs=0 005/300: dt: 0.9000, rms radial error=176.973, avgs=0 010/300: dt: 0.9000, rms radial error=176.416, avgs=0 015/300: dt: 0.9000, rms radial error=175.684, avgs=0 020/300: dt: 0.9000, rms radial error=174.851, avgs=0 025/300: dt: 0.9000, rms radial error=173.959, avgs=0 030/300: dt: 0.9000, rms radial error=173.036, avgs=0 035/300: dt: 0.9000, rms radial error=172.096, avgs=0 040/300: dt: 0.9000, rms radial error=171.149, avgs=0 045/300: dt: 0.9000, rms radial error=170.198, avgs=0 050/300: dt: 0.9000, rms radial error=169.249, avgs=0 055/300: dt: 0.9000, rms radial error=168.302, avgs=0 060/300: dt: 0.9000, rms radial error=167.358, avgs=0 065/300: dt: 0.9000, rms radial error=166.419, avgs=0 070/300: dt: 0.9000, rms radial error=165.483, avgs=0 075/300: dt: 0.9000, rms radial error=164.553, avgs=0 080/300: dt: 0.9000, rms radial error=163.627, avgs=0 085/300: dt: 0.9000, rms radial error=162.705, avgs=0 090/300: dt: 0.9000, rms radial error=161.790, avgs=0 095/300: dt: 0.9000, rms radial error=160.879, avgs=0 100/300: dt: 0.9000, rms radial error=159.973, avgs=0 105/300: dt: 0.9000, rms radial error=159.072, avgs=0 110/300: dt: 0.9000, rms radial error=158.176, avgs=0 115/300: dt: 0.9000, rms radial error=157.284, avgs=0 120/300: dt: 0.9000, rms radial error=156.398, avgs=0 125/300: dt: 0.9000, rms radial error=155.516, avgs=0 130/300: dt: 0.9000, rms radial error=154.639, avgs=0 135/300: dt: 0.9000, rms radial error=153.767, avgs=0 140/300: dt: 0.9000, rms radial error=152.901, avgs=0 145/300: dt: 0.9000, rms radial error=152.040, avgs=0 150/300: dt: 0.9000, rms radial error=151.185, avgs=0 155/300: dt: 0.9000, rms radial error=150.334, avgs=0 160/300: dt: 0.9000, rms radial error=149.487, avgs=0 165/300: dt: 0.9000, rms radial error=148.646, avgs=0 170/300: dt: 0.9000, rms radial error=147.809, avgs=0 175/300: dt: 0.9000, rms radial error=146.977, avgs=0 180/300: dt: 0.9000, rms radial error=146.149, avgs=0 185/300: dt: 0.9000, rms radial error=145.326, avgs=0 190/300: dt: 0.9000, rms radial error=144.508, avgs=0 195/300: dt: 0.9000, rms radial error=143.694, avgs=0 200/300: dt: 0.9000, rms radial error=142.884, avgs=0 205/300: dt: 0.9000, rms radial error=142.079, avgs=0 210/300: dt: 0.9000, rms radial error=141.278, avgs=0 215/300: dt: 0.9000, rms radial error=140.482, avgs=0 220/300: dt: 0.9000, rms radial error=139.691, avgs=0 225/300: dt: 0.9000, rms radial error=138.903, avgs=0 230/300: dt: 0.9000, rms radial error=138.121, avgs=0 235/300: dt: 0.9000, rms radial error=137.342, avgs=0 240/300: dt: 0.9000, rms radial error=136.568, avgs=0 245/300: dt: 0.9000, rms radial error=135.799, avgs=0 250/300: dt: 0.9000, rms radial error=135.033, avgs=0 255/300: dt: 0.9000, rms radial error=134.272, avgs=0 260/300: dt: 0.9000, rms radial error=133.516, avgs=0 265/300: dt: 0.9000, rms radial error=132.763, avgs=0 270/300: dt: 0.9000, rms radial error=132.015, avgs=0 275/300: dt: 0.9000, rms radial error=131.271, avgs=0 280/300: dt: 0.9000, rms radial error=130.531, avgs=0 285/300: dt: 0.9000, rms radial error=129.795, avgs=0 290/300: dt: 0.9000, rms radial error=129.063, avgs=0 295/300: dt: 0.9000, rms radial error=128.335, avgs=0 300/300: dt: 0.9000, rms radial error=127.612, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 11649.09 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00049 epoch 2 (K=40.0), pass 1, starting sse = 1707.68 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.01/13 = 0.00057 epoch 3 (K=160.0), pass 1, starting sse = 147.97 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.16/15 = 0.01098 epoch 4 (K=640.0), pass 1, starting sse = 11.35 taking momentum steps... taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.10/17 = 0.00590 final distance error %100000.00 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.0297 hours FSRUNTIME@ mris_sphere 0.0297 hours 1 threads #VMPC# mris_sphere VmPeak 456112 mris_sphere done @#@FSTIME 2022:04:18:05:07:10 mris_sphere N 9 e 107.02 S 4.67 U 102.30 P 99% M 168108 F 0 R 2477960 W 0 c 135 w 131 I 0 O 7296 L 25.41 25.27 25.21 @#@FSLOADPOST 2022:04:18:05:08:57 mris_sphere N 9 25.39 25.29 25.22 #@# Fix Topology lh Mon Apr 18 05:08:57 CDT 2022 mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 MOD1707_Y2_a_fs7p2 lh reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 7.2.0 7.2.0 before topology correction, eno=-78 (nv=104611, nf=209378, ne=314067, g=40) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 10 iterations marking ambiguous vertices... 5735 ambiguous faces found in tessellation segmenting defects... 36 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 16 into 15 35 defects to be corrected 0 vertices coincident reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.4735 (-4.7368) -vertex loglikelihood: -6.5771 (-3.2886) -normal dot loglikelihood: -3.5248 (-3.5248) -quad curv loglikelihood: -5.8763 (-2.9382) Total Loglikelihood : -25.4517 CORRECTING DEFECT 0 (vertices=53, convex hull=91, v0=55) After retessellation of defect 0 (v0=55), euler #=-33 (101202,302332,201097) : difference with theory (-32) = 1 CORRECTING DEFECT 1 (vertices=155, convex hull=131, v0=725) After retessellation of defect 1 (v0=725), euler #=-32 (101238,302494,201224) : difference with theory (-31) = 1 CORRECTING DEFECT 2 (vertices=15, convex hull=46, v0=1527) After retessellation of defect 2 (v0=1527), euler #=-31 (101245,302531,201255) : difference with theory (-30) = 1 CORRECTING DEFECT 3 (vertices=30, convex hull=71, v0=3565) After retessellation of defect 3 (v0=3565), euler #=-30 (101256,302592,201306) : difference with theory (-29) = 1 CORRECTING DEFECT 4 (vertices=61, convex hull=97, v0=3738) After retessellation of defect 4 (v0=3738), euler #=-29 (101271,302680,201380) : difference with theory (-28) = 1 CORRECTING DEFECT 5 (vertices=197, convex hull=164, v0=5849) After retessellation of defect 5 (v0=5849), euler #=-28 (101331,302942,201583) : difference with theory (-27) = 1 CORRECTING DEFECT 6 (vertices=5, convex hull=17, v0=8540) After retessellation of defect 6 (v0=8540), euler #=-27 (101331,302947,201589) : difference with theory (-26) = 1 CORRECTING DEFECT 7 (vertices=26, convex hull=66, v0=9006) After retessellation of defect 7 (v0=9006), euler #=-26 (101342,303004,201636) : difference with theory (-25) = 1 CORRECTING DEFECT 8 (vertices=34, convex hull=56, v0=15326) After retessellation of defect 8 (v0=15326), euler #=-25 (101350,303053,201678) : difference with theory (-24) = 1 CORRECTING DEFECT 9 (vertices=19, convex hull=60, v0=16200) After retessellation of defect 9 (v0=16200), euler #=-24 (101359,303103,201720) : difference with theory (-23) = 1 CORRECTING DEFECT 10 (vertices=1098, convex hull=387, v0=25241) After retessellation of defect 10 (v0=25241), euler #=-23 (101554,303881,202304) : difference with theory (-22) = 1 CORRECTING DEFECT 11 (vertices=29, convex hull=68, v0=25323) After retessellation of defect 11 (v0=25323), euler #=-22 (101569,303951,202360) : difference with theory (-21) = 1 CORRECTING DEFECT 12 (vertices=38, convex hull=58, v0=31356) After retessellation of defect 12 (v0=31356), euler #=-21 (101578,304004,202405) : difference with theory (-20) = 1 CORRECTING DEFECT 13 (vertices=26, convex hull=56, v0=32961) After retessellation of defect 13 (v0=32961), euler #=-20 (101586,304047,202441) : difference with theory (-19) = 1 CORRECTING DEFECT 14 (vertices=7, convex hull=24, v0=33312) After retessellation of defect 14 (v0=33312), euler #=-19 (101589,304063,202455) : difference with theory (-18) = 1 CORRECTING DEFECT 15 (vertices=446, convex hull=395, v0=34215) After retessellation of defect 15 (v0=34215), euler #=-17 (101664,304485,202804) : difference with theory (-17) = 0 CORRECTING DEFECT 16 (vertices=16, convex hull=70, v0=34315) After retessellation of defect 16 (v0=34315), euler #=-16 (101667,304518,202835) : difference with theory (-16) = 0 CORRECTING DEFECT 17 (vertices=42, convex hull=73, v0=36212) After retessellation of defect 17 (v0=36212), euler #=-15 (101677,304580,202888) : difference with theory (-15) = 0 CORRECTING DEFECT 18 (vertices=22, convex hull=32, v0=52152) After retessellation of defect 18 (v0=52152), euler #=-14 (101683,304608,202911) : difference with theory (-14) = 0 CORRECTING DEFECT 19 (vertices=25, convex hull=58, v0=53759) After retessellation of defect 19 (v0=53759), euler #=-13 (101691,304656,202952) : difference with theory (-13) = 0 CORRECTING DEFECT 20 (vertices=27, convex hull=49, v0=56086) After retessellation of defect 20 (v0=56086), euler #=-12 (101700,304703,202991) : difference with theory (-12) = 0 CORRECTING DEFECT 21 (vertices=123, convex hull=70, v0=58568) After retessellation of defect 21 (v0=58568), euler #=-11 (101721,304801,203069) : difference with theory (-11) = 0 CORRECTING DEFECT 22 (vertices=60, convex hull=101, v0=71283) After retessellation of defect 22 (v0=71283), euler #=-10 (101752,304938,203176) : difference with theory (-10) = 0 CORRECTING DEFECT 23 (vertices=20, convex hull=59, v0=71394) After retessellation of defect 23 (v0=71394), euler #=-9 (101760,304985,203216) : difference with theory (-9) = 0 CORRECTING DEFECT 24 (vertices=242, convex hull=54, v0=71794) After retessellation of defect 24 (v0=71794), euler #=-8 (101769,305033,203256) : difference with theory (-8) = 0 CORRECTING DEFECT 25 (vertices=53, convex hull=97, v0=73921) After retessellation of defect 25 (v0=73921), euler #=-7 (101800,305168,203361) : difference with theory (-7) = 0 CORRECTING DEFECT 26 (vertices=213, convex hull=81, v0=74075) After retessellation of defect 26 (v0=74075), euler #=-6 (101828,305283,203449) : difference with theory (-6) = 0 CORRECTING DEFECT 27 (vertices=41, convex hull=60, v0=75553) After retessellation of defect 27 (v0=75553), euler #=-5 (101840,305341,203496) : difference with theory (-5) = 0 CORRECTING DEFECT 28 (vertices=113, convex hull=50, v0=76285) After retessellation of defect 28 (v0=76285), euler #=-4 (101853,305400,203543) : difference with theory (-4) = 0 CORRECTING DEFECT 29 (vertices=21, convex hull=51, v0=79725) After retessellation of defect 29 (v0=79725), euler #=-3 (101860,305440,203577) : difference with theory (-3) = 0 CORRECTING DEFECT 30 (vertices=58, convex hull=78, v0=84741) After retessellation of defect 30 (v0=84741), euler #=-2 (101871,305505,203632) : difference with theory (-2) = 0 CORRECTING DEFECT 31 (vertices=19, convex hull=47, v0=90930) After retessellation of defect 31 (v0=90930), euler #=-1 (101877,305540,203662) : difference with theory (-1) = 0 CORRECTING DEFECT 32 (vertices=43, convex hull=67, v0=92547) After retessellation of defect 32 (v0=92547), euler #=0 (101887,305602,203715) : difference with theory (0) = 0 CORRECTING DEFECT 33 (vertices=36, convex hull=76, v0=94816) After retessellation of defect 33 (v0=94816), euler #=1 (101897,305663,203767) : difference with theory (1) = 0 CORRECTING DEFECT 34 (vertices=23, convex hull=59, v0=96059) After retessellation of defect 34 (v0=96059), euler #=2 (101905,305709,203806) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.87 +- 0.20 (0.09-->9.52) (max @ vno 675 --> 4787) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.87 +- 0.20 (0.09-->9.52) (max @ vno 675 --> 4787) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 125 mutations (33.1%), 253 crossovers (66.9%), 158 vertices were eliminated building final representation... 2706 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=101905, nf=203806, ne=305709, g=0) writing corrected surface to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 86 intersecting 001: 15 intersecting terminating search with 0 intersecting topology fixing took 2.2 minutes FSRUNTIME@ mris_fix_topology lh 0.0367 hours 1 threads #VMPC# mris_fix_topology VmPeak 834364 @#@FSTIME 2022:04:18:05:08:57 mris_fix_topology N 14 e 132.14 S 1.24 U 130.84 P 99% M 781176 F 0 R 335973 W 0 c 96 w 267 I 0 O 9640 L 25.39 25.29 25.22 @#@FSLOADPOST 2022:04:18:05:11:09 mris_fix_topology N 14 25.15 25.26 25.22 #@# Fix Topology rh Mon Apr 18 05:11:09 CDT 2022 mris_fix_topology -mgz -sphere qsphere.nofix -inflated inflated.nofix -orig orig.nofix -out orig.premesh -ga -seed 1234 MOD1707_Y2_a_fs7p2 rh reading spherical homeomorphism from 'qsphere.nofix' reading inflated coordinates from 'inflated.nofix' reading original coordinates from 'orig.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format writing corrected surface to 'orig.premesh' 7.2.0 7.2.0 before topology correction, eno=-76 (nv=103555, nf=207262, ne=310893, g=39) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 10 iterations marking ambiguous vertices... 5372 ambiguous faces found in tessellation segmenting defects... 48 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 2 into 0 -merging segment 14 into 13 -merging segment 17 into 15 -merging segment 18 into 15 44 defects to be corrected 0 vertices coincident reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Reading original properties of orig.nofix Reading vertex positions of inflated.nofix Computing Initial Surface Statistics -face loglikelihood: -9.4702 (-4.7351) -vertex loglikelihood: -6.6230 (-3.3115) -normal dot loglikelihood: -3.4158 (-3.4158) -quad curv loglikelihood: -5.8312 (-2.9156) Total Loglikelihood : -25.3402 CORRECTING DEFECT 0 (vertices=430, convex hull=313, v0=0) After retessellation of defect 0 (v0=0), euler #=-44 (100365,299892,199483) : difference with theory (-41) = 3 CORRECTING DEFECT 1 (vertices=47, convex hull=35, v0=50) After retessellation of defect 1 (v0=50), euler #=-43 (100374,299932,199515) : difference with theory (-40) = 3 CORRECTING DEFECT 2 (vertices=42, convex hull=69, v0=3041) After retessellation of defect 2 (v0=3041), euler #=-42 (100386,299997,199569) : difference with theory (-39) = 3 CORRECTING DEFECT 3 (vertices=282, convex hull=53, v0=4775) After retessellation of defect 3 (v0=4775), euler #=-41 (100404,300071,199626) : difference with theory (-38) = 3 CORRECTING DEFECT 4 (vertices=75, convex hull=107, v0=5892) After retessellation of defect 4 (v0=5892), euler #=-40 (100427,300188,199721) : difference with theory (-37) = 3 CORRECTING DEFECT 5 (vertices=228, convex hull=87, v0=6884) After retessellation of defect 5 (v0=6884), euler #=-39 (100454,300307,199814) : difference with theory (-36) = 3 CORRECTING DEFECT 6 (vertices=114, convex hull=129, v0=10223) After retessellation of defect 6 (v0=10223), euler #=-38 (100501,300505,199966) : difference with theory (-35) = 3 CORRECTING DEFECT 7 (vertices=83, convex hull=65, v0=13988) After retessellation of defect 7 (v0=13988), euler #=-37 (100519,300585,200029) : difference with theory (-34) = 3 CORRECTING DEFECT 8 (vertices=40, convex hull=83, v0=14099) After retessellation of defect 8 (v0=14099), euler #=-36 (100536,300669,200097) : difference with theory (-33) = 3 CORRECTING DEFECT 9 (vertices=60, convex hull=117, v0=15747) After retessellation of defect 9 (v0=15747), euler #=-35 (100564,300807,200208) : difference with theory (-32) = 3 CORRECTING DEFECT 10 (vertices=19, convex hull=61, v0=24162) After retessellation of defect 10 (v0=24162), euler #=-34 (100571,300851,200246) : difference with theory (-31) = 3 CORRECTING DEFECT 11 (vertices=61, convex hull=57, v0=24298) After retessellation of defect 11 (v0=24298), euler #=-33 (100583,300910,200294) : difference with theory (-30) = 3 CORRECTING DEFECT 12 (vertices=44, convex hull=79, v0=26714) After retessellation of defect 12 (v0=26714), euler #=-31 (100593,300972,200348) : difference with theory (-29) = 2 CORRECTING DEFECT 13 (vertices=258, convex hull=229, v0=32367) After retessellation of defect 13 (v0=32367), euler #=-28 (100616,301157,200513) : difference with theory (-28) = 0 CORRECTING DEFECT 14 (vertices=288, convex hull=168, v0=34204) After retessellation of defect 14 (v0=34204), euler #=-27 (100625,301264,200612) : difference with theory (-27) = 0 CORRECTING DEFECT 15 (vertices=13, convex hull=31, v0=44695) After retessellation of defect 15 (v0=44695), euler #=-26 (100625,301274,200623) : difference with theory (-26) = 0 CORRECTING DEFECT 16 (vertices=8, convex hull=16, v0=45469) After retessellation of defect 16 (v0=45469), euler #=-25 (100627,301284,200632) : difference with theory (-25) = 0 CORRECTING DEFECT 17 (vertices=79, convex hull=35, v0=46297) After retessellation of defect 17 (v0=46297), euler #=-24 (100637,301329,200668) : difference with theory (-24) = 0 CORRECTING DEFECT 18 (vertices=23, convex hull=93, v0=54001) After retessellation of defect 18 (v0=54001), euler #=-23 (100646,301394,200725) : difference with theory (-23) = 0 CORRECTING DEFECT 19 (vertices=40, convex hull=41, v0=54423) After retessellation of defect 19 (v0=54423), euler #=-22 (100651,301427,200754) : difference with theory (-22) = 0 CORRECTING DEFECT 20 (vertices=17, convex hull=43, v0=58115) After retessellation of defect 20 (v0=58115), euler #=-21 (100656,301456,200779) : difference with theory (-21) = 0 CORRECTING DEFECT 21 (vertices=34, convex hull=34, v0=60780) After retessellation of defect 21 (v0=60780), euler #=-20 (100664,301494,200810) : difference with theory (-20) = 0 CORRECTING DEFECT 22 (vertices=13, convex hull=23, v0=61165) After retessellation of defect 22 (v0=61165), euler #=-19 (100667,301507,200821) : difference with theory (-19) = 0 CORRECTING DEFECT 23 (vertices=25, convex hull=16, v0=62163) After retessellation of defect 23 (v0=62163), euler #=-18 (100668,301513,200827) : difference with theory (-18) = 0 CORRECTING DEFECT 24 (vertices=51, convex hull=85, v0=66068) After retessellation of defect 24 (v0=66068), euler #=-17 (100691,301614,200906) : difference with theory (-17) = 0 CORRECTING DEFECT 25 (vertices=30, convex hull=59, v0=66696) After retessellation of defect 25 (v0=66696), euler #=-16 (100705,301678,200957) : difference with theory (-16) = 0 CORRECTING DEFECT 26 (vertices=220, convex hull=71, v0=69593) After retessellation of defect 26 (v0=69593), euler #=-15 (100714,301730,201001) : difference with theory (-15) = 0 CORRECTING DEFECT 27 (vertices=19, convex hull=21, v0=72273) After retessellation of defect 27 (v0=72273), euler #=-14 (100720,301754,201020) : difference with theory (-14) = 0 CORRECTING DEFECT 28 (vertices=68, convex hull=69, v0=73762) After retessellation of defect 28 (v0=73762), euler #=-13 (100757,301899,201129) : difference with theory (-13) = 0 CORRECTING DEFECT 29 (vertices=26, convex hull=49, v0=74615) After retessellation of defect 29 (v0=74615), euler #=-12 (100766,301949,201171) : difference with theory (-12) = 0 CORRECTING DEFECT 30 (vertices=39, convex hull=68, v0=75562) After retessellation of defect 30 (v0=75562), euler #=-11 (100785,302034,201238) : difference with theory (-11) = 0 CORRECTING DEFECT 31 (vertices=95, convex hull=100, v0=75670) After retessellation of defect 31 (v0=75670), euler #=-10 (100826,302203,201367) : difference with theory (-10) = 0 CORRECTING DEFECT 32 (vertices=45, convex hull=50, v0=76887) After retessellation of defect 32 (v0=76887), euler #=-9 (100837,302257,201411) : difference with theory (-9) = 0 CORRECTING DEFECT 33 (vertices=95, convex hull=72, v0=77479) After retessellation of defect 33 (v0=77479), euler #=-8 (100857,302350,201485) : difference with theory (-8) = 0 CORRECTING DEFECT 34 (vertices=22, convex hull=47, v0=79655) After retessellation of defect 34 (v0=79655), euler #=-7 (100867,302398,201524) : difference with theory (-7) = 0 CORRECTING DEFECT 35 (vertices=38, convex hull=67, v0=83926) After retessellation of defect 35 (v0=83926), euler #=-6 (100876,302450,201568) : difference with theory (-6) = 0 CORRECTING DEFECT 36 (vertices=77, convex hull=84, v0=94118) After retessellation of defect 36 (v0=94118), euler #=-5 (100889,302523,201629) : difference with theory (-5) = 0 CORRECTING DEFECT 37 (vertices=18, convex hull=43, v0=94672) After retessellation of defect 37 (v0=94672), euler #=-4 (100897,302561,201660) : difference with theory (-4) = 0 CORRECTING DEFECT 38 (vertices=16, convex hull=57, v0=96452) After retessellation of defect 38 (v0=96452), euler #=-3 (100905,302607,201699) : difference with theory (-3) = 0 CORRECTING DEFECT 39 (vertices=24, convex hull=49, v0=97806) After retessellation of defect 39 (v0=97806), euler #=-2 (100914,302652,201736) : difference with theory (-2) = 0 CORRECTING DEFECT 40 (vertices=23, convex hull=60, v0=98073) After retessellation of defect 40 (v0=98073), euler #=-1 (100923,302703,201779) : difference with theory (-1) = 0 CORRECTING DEFECT 41 (vertices=18, convex hull=53, v0=98906) After retessellation of defect 41 (v0=98906), euler #=0 (100931,302747,201816) : difference with theory (0) = 0 CORRECTING DEFECT 42 (vertices=33, convex hull=59, v0=99123) After retessellation of defect 42 (v0=99123), euler #=1 (100944,302810,201867) : difference with theory (1) = 0 CORRECTING DEFECT 43 (vertices=21, convex hull=52, v0=102026) After retessellation of defect 43 (v0=102026), euler #=2 (100953,302853,201902) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.87 +- 0.21 (0.11-->9.15) (max @ vno 32037 --> 35815) face area -nan +- -nan (1000.00-->-1.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.87 +- 0.21 (0.11-->9.15) (max @ vno 32037 --> 35815) face area -nan +- -nan (1000.00-->-1.00) tessellation finished, orienting corrected surface... 174 mutations (34.4%), 332 crossovers (65.6%), 208 vertices were eliminated building final representation... 2602 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=100953, nf=201902, ne=302853, g=0) writing corrected surface to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig.premesh... 0.000 % of the vertices (0 vertices) exhibit an orientation change removing intersecting faces 000: 86 intersecting 001: 10 intersecting 002: 5 intersecting 003: 3 intersecting terminating search with 0 intersecting topology fixing took 3.8 minutes FSRUNTIME@ mris_fix_topology rh 0.0631 hours 1 threads #VMPC# mris_fix_topology VmPeak 917240 @#@FSTIME 2022:04:18:05:11:09 mris_fix_topology N 14 e 227.22 S 1.74 U 225.43 P 99% M 848488 F 0 R 242022 W 0 c 163 w 355 I 0 O 9560 L 25.15 25.26 25.22 @#@FSLOADPOST 2022:04:18:05:14:57 mris_fix_topology N 14 25.04 25.15 25.18 mris_euler_number ../surf/lh.orig.premesh euler # = v-e+f = 2g-2: 101905 - 305709 + 203806 = 2 --> 0 holes F =2V-4: 203806 = 203810-4 (0) 2E=3F: 611418 = 611418 (0) total defect index = 0 mris_euler_number ../surf/rh.orig.premesh euler # = v-e+f = 2g-2: 100953 - 302853 + 201902 = 2 --> 0 holes F =2V-4: 201902 = 201906-4 (0) 2E=3F: 605706 = 605706 (0) total defect index = 0 Mon Apr 18 05:14:58 CDT 2022 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts /usr/local/pkg/freesurfer7.2/bin/defect2seg --s MOD1707_Y2_a_fs7p2 freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b defect2seg 7.2.0 Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux pid 29725 mri_label2vol --defects /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig.nofix /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.defect_labels /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz 1000 0 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/surface.defects.mgz mri_label2vol supposed to be reproducible but seed not set Changing input type 0 to MRI_INT Converting defects to volume: offset=1000, merge=0 Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/surface.defects.mgz mris_defects_pointset -s /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig.nofix -d /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.defect_labels -o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.defects.pointset Reading in surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig.nofix Reading in defect segmentation /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.defect_labels #VMPC# mris_defects_pointset 155508 mris_defects_pointset done mri_label2vol --defects /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig.nofix /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.defect_labels /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/surface.defects.mgz 2000 1 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/surface.defects.mgz mri_label2vol supposed to be reproducible but seed not set Converting defects to volume: offset=2000, merge=1 MRIcopyHeader(): source has ctab Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/surface.defects.mgz mris_defects_pointset -s /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig.nofix -d /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.defect_labels -o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.defects.pointset Reading in surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig.nofix Reading in defect segmentation /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.defect_labels #VMPC# mris_defects_pointset 154324 mris_defects_pointset done Started at Mon Apr 18 05:14:58 CDT 2022 Ended at Mon Apr 18 05:15:05 CDT 2022 Defect2seg-Run-Time-Sec 7 Defect2seg-Run-Time-Min 0.14 Defect2seg-Run-Time-Hours 0.00 tkmeditfv MOD1707_Y2_a_fs7p2 brain.finalsurfs.mgz -defect defect2seg Done @#@FSTIME 2022:04:18:05:14:58 defect2seg N 2 e 7.06 S 0.54 U 6.38 P 98% M 286608 F 0 R 216208 W 0 c 14 w 447 I 0 O 888 L 25.04 25.15 25.18 @#@FSLOADPOST 2022:04:18:05:15:05 defect2seg N 2 25.04 25.15 25.18 mris_remesh --remesh --iters 3 --input /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig.premesh --output /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig iters = 3 standard remeshing without target adjusted l: 0.694411 remeshing to edge length 0.694411 with 3 iterations avg qual before : 0.933465 after: 0.970466 Removing intersections Remeshed surface quality stats nv0 = 101905 nv = 109079 1.0704 Area 218154 0.28960 0.03295 0.011883 0.4548 Corner 654462 60.00000 8.90657 14.914085 149.8335 Edge 327231 0.82576 0.08184 0.131396 1.2400 Hinge 327231 9.39600 11.24505 0.000013 173.3441 mris_remesh done @#@FSTIME 2022:04:18:05:15:05 mris_remesh N 7 e 29.19 S 0.57 U 28.58 P 99% M 568132 F 0 R 209631 W 0 c 30 w 123 I 0 O 7672 L 25.04 25.15 25.18 @#@FSLOADPOST 2022:04:18:05:15:34 mris_remesh N 7 25.02 25.14 25.17 mris_remesh --remesh --iters 3 --input /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig.premesh --output /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig iters = 3 standard remeshing without target adjusted l: 0.695398 remeshing to edge length 0.695398 with 3 iterations avg qual before : 0.933565 after: 0.970736 Removing intersections Remeshed surface quality stats nv0 = 100953 nv = 108160 1.07139 Area 216316 0.29028 0.03278 0.084752 0.4297 Corner 648948 60.00000 8.86501 18.189125 141.9286 Edge 324474 0.82667 0.08144 0.441521 1.2113 Hinge 324474 9.49392 11.16702 0.000050 147.1504 mris_remesh done @#@FSTIME 2022:04:18:05:15:34 mris_remesh N 7 e 27.53 S 0.52 U 26.97 P 99% M 563208 F 0 R 207556 W 0 c 20 w 137 I 0 O 7608 L 25.02 25.14 25.17 @#@FSLOADPOST 2022:04:18:05:16:02 mris_remesh N 7 25.08 25.14 25.17 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.00 hours writing corrected surface to ../surf/lh.orig @#@FSTIME 2022:04:18:05:16:02 mris_remove_intersection N 2 e 2.40 S 0.15 U 2.18 P 97% M 273216 F 0 R 71933 W 0 c 4 w 218 I 0 O 7672 L 25.08 25.14 25.17 @#@FSLOADPOST 2022:04:18:05:16:04 mris_remove_intersection N 2 25.08 25.14 25.17 rm -f ../surf/lh.inflated /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours writing corrected surface to ../surf/rh.orig @#@FSTIME 2022:04:18:05:16:04 mris_remove_intersection N 2 e 2.30 S 0.16 U 2.09 P 98% M 273292 F 0 R 71881 W 0 c 5 w 138 I 0 O 7608 L 25.08 25.14 25.17 @#@FSLOADPOST 2022:04:18:05:16:07 mris_remove_intersection N 2 25.07 25.14 25.17 rm -f ../surf/rh.inflated #-------------------------------------------- #@# AutoDetGWStats lh Mon Apr 18 05:16:07 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_autodet_gwstats --o ../surf/autodet.gw.stats.lh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/lh.orig.premesh border white: 292715 voxels (0.89%) border gray 344690 voxels (1.05%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/lh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (99.0): 99.1 +- 7.9 [70.0 --> 110.0] CCS GM (77.0) : 76.4 +- 9.0 [30.0 --> 110.0] white_mean = 99.1336 +/- 7.8754, gray_mean = 76.4192 +/- 9.02407 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=212 nbins=213 intensity peaks found at WM=108+-6.1, GM=70+-7.0 white_mode = 108, gray_mode = 70 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 61.0 (was 70.000000) setting MAX_BORDER_WHITE to 115.9 (was 105.000000) setting MIN_BORDER_WHITE to 70.0 (was 85.000000) setting MAX_CSF to 52.0 (was 40.000000) setting MAX_GRAY to 100.1 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 61.0 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 42.9 (was 40.000000) When placing the white surface white_border_hi = 115.875; white_border_low = 70; white_outside_low = 60.9759; white_inside_hi = 120; white_outside_hi = 115.875; When placing the pial surface pial_border_hi = 60.9759; pial_border_low = 42.9278; pial_outside_low = 10; pial_inside_hi = 100.125; pial_outside_hi = 56.4639; #VMPC# mris_autodet_gwstats VmPeak 292636 mris_autodet_gwstats done @#@FSTIME 2022:04:18:05:16:07 mris_autodet_gwstats N 8 e 7.57 S 0.16 U 7.40 P 99% M 251488 F 0 R 70974 W 0 c 12 w 30 I 4168 O 8 L 25.07 25.14 25.17 @#@FSLOADPOST 2022:04:18:05:16:14 mris_autodet_gwstats N 8 25.07 25.13 25.17 #-------------------------------------------- #@# AutoDetGWStats rh Mon Apr 18 05:16:14 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_autodet_gwstats --o ../surf/autodet.gw.stats.rh.dat --i brain.finalsurfs.mgz --wm wm.mgz --surf ../surf/rh.orig.premesh border white: 292715 voxels (0.89%) border gray 344690 voxels (1.05%) Reading in intensity volume brain.finalsurfs.mgz Reading in wm volume wm.mgz Reading in surf ../surf/rh.orig.premesh Auto detecting stats MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 Binarizing thresholding at 5 computing class statistics... low=30, hi=110.000000 CCS WM (99.0): 99.1 +- 7.9 [70.0 --> 110.0] CCS GM (77.0) : 76.4 +- 9.0 [30.0 --> 110.0] white_mean = 99.1336 +/- 7.8754, gray_mean = 76.4192 +/- 9.02407 using class modes intead of means, discounting robust sigmas.... MRIScomputeClassModes(): min=0 max=212 nbins=213 intensity peaks found at WM=108+-6.1, GM=70+-7.0 white_mode = 108, gray_mode = 70 std_scale = 1 Applying sanity checks, max_scale_down = 0.2 setting MIN_GRAY_AT_WHITE_BORDER to 61.0 (was 70.000000) setting MAX_BORDER_WHITE to 115.9 (was 105.000000) setting MIN_BORDER_WHITE to 70.0 (was 85.000000) setting MAX_CSF to 52.0 (was 40.000000) setting MAX_GRAY to 100.1 (was 95.000000) setting MAX_GRAY_AT_CSF_BORDER to 61.0 (was 75.000000) setting MIN_GRAY_AT_CSF_BORDER to 42.9 (was 40.000000) When placing the white surface white_border_hi = 115.875; white_border_low = 70; white_outside_low = 60.9759; white_inside_hi = 120; white_outside_hi = 115.875; When placing the pial surface pial_border_hi = 60.9759; pial_border_low = 42.9278; pial_outside_low = 10; pial_inside_hi = 100.125; pial_outside_hi = 56.4639; #VMPC# mris_autodet_gwstats VmPeak 291604 mris_autodet_gwstats done @#@FSTIME 2022:04:18:05:16:14 mris_autodet_gwstats N 8 e 7.72 S 0.14 U 7.57 P 99% M 250240 F 0 R 70624 W 0 c 18 w 25 I 0 O 8 L 25.07 25.13 25.17 @#@FSLOADPOST 2022:04:18:05:16:22 mris_autodet_gwstats N 8 25.06 25.13 25.17 #-------------------------------------------- #@# WhitePreAparc lh Mon Apr 18 05:16:22 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --lh --i ../surf/lh.orig --o ../surf/lh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/lh.orig Smoothing surface with 5 iterations removing intersecting faces 000: 2 intersecting step 1 with no progress (num=5, old_num=2) 001: 5 intersecting 002: 4 intersecting step 1 with no progress (num=10, old_num=4) 003: 10 intersecting 004: 9 intersecting 005: 8 intersecting step 1 with no progress (num=15, old_num=8) 006: 15 intersecting 007: 13 intersecting step 1 with no progress (num=21, old_num=13) 008: 21 intersecting 009: 17 intersecting step 1 with no progress (num=19, old_num=17) 010: 19 intersecting 011: 17 intersecting step 1 with no progress (num=23, old_num=17) 012: 23 intersecting 013: 17 intersecting step 1 with no progress (num=24, old_num=17) 014: 24 intersecting step 2 with no progress (num=24, old_num=24) 015: 24 intersecting 016: 23 intersecting step 1 with no progress (num=27, old_num=23) 017: 27 intersecting 018: 16 intersecting step 1 with no progress (num=19, old_num=16) 019: 19 intersecting step 2 with no progress (num=26, old_num=19) 020: 26 intersecting 021: 25 intersecting step 1 with no progress (num=25, old_num=25) 022: 25 intersecting step 2 with no progress (num=25, old_num=25) 023: 25 intersecting step 3 with no progress (num=25, old_num=25) 024: 25 intersecting step 4 with no progress (num=25, old_num=25) 025: 25 intersecting step 5 with no progress (num=25, old_num=25) 026: 25 intersecting step 6 with no progress (num=25, old_num=25) 027: 25 intersecting step 7 with no progress (num=25, old_num=25) 028: 25 intersecting step 8 with no progress (num=25, old_num=25) 029: 25 intersecting step 9 with no progress (num=25, old_num=25) 030: 25 intersecting step 10 with no progress (num=25, old_num=25) 031: 25 intersecting step 11 with no progress (num=25, old_num=25) 032: 25 intersecting step 12 with no progress (num=25, old_num=25) 033: 25 intersecting step 13 with no progress (num=25, old_num=25) 034: 25 intersecting step 14 with no progress (num=25, old_num=25) 035: 25 intersecting step 15 with no progress (num=25, old_num=25) 036: 25 intersecting step 16 with no progress (num=25, old_num=25) terminating search with 2 intersecting Area 218154 0.25394 0.06522 0.000009 0.5252 Corner 654462 60.00000 10.39766 0.082431 179.7148 Edge 327231 0.76952 0.12104 0.020957 1.3446 Hinge 327231 6.55792 7.50287 0.000002 179.1458 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 MRIcopyHeader(): source has ctab removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5820, nmarked2=95, nripped=5820 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 54540: xyz = (-50.6984,1.08945,-36.0889) oxyz = (-50.6984,1.08945,-36.0889) wxzy = (-50.6984,1.08945,-36.0889) pxyz = (0,0,0) CBVO Creating mask 109079 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5820 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5820, nmarked2=95, nripped=5820 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=2 had to be increased for 332 vertices, nripped=5820 mean border=82.9, 119 (119) missing vertices, mean dist 0.3 [0.4 (%31.7)->0.6 (%68.3))] %83 local maxima, %12 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1644 min Finding expansion regions mean absolute distance = 0.56 +- 0.69 2993 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=2023345.6, rms=9.606 001: dt: 0.5000, sse=1056285.4, rms=6.769 (29.535%) 002: dt: 0.5000, sse=732439.1, rms=5.489 (18.908%) 003: dt: 0.5000, sse=589016.9, rms=4.804 (12.484%) 004: dt: 0.5000, sse=516319.3, rms=4.428 (7.831%) 005: dt: 0.5000, sse=486895.7, rms=4.257 (3.851%) 006: dt: 0.5000, sse=475870.2, rms=4.176 (1.899%) rms = 4.1553/4.1762, sse=471425.1/475870.2, time step reduction 1 of 3 to 0.250 0 0 1 007: dt: 0.5000, sse=471425.1, rms=4.155 (0.502%) 008: dt: 0.2500, sse=297898.8, rms=2.948 (29.047%) 009: dt: 0.2500, sse=267216.5, rms=2.676 (9.239%) 010: dt: 0.2500, sse=254492.3, rms=2.558 (4.397%) 011: dt: 0.2500, sse=242717.5, rms=2.445 (4.421%) 012: dt: 0.2500, sse=233014.1, rms=2.344 (4.143%) 013: dt: 0.2500, sse=229215.6, rms=2.251 (3.940%) 014: dt: 0.2500, sse=221704.3, rms=2.173 (3.502%) 015: dt: 0.2500, sse=220949.1, rms=2.102 (3.258%) rms = 2.0428/2.1019, sse=222575.4/220949.1, time step reduction 2 of 3 to 0.125 0 1 0 016: dt: 0.2500, sse=222575.4, rms=2.043 (2.811%) 017: dt: 0.1250, sse=201897.5, rms=1.973 (3.435%) rms = 1.9462/1.9726, sse=199739.0/201897.6, time step reduction 3 of 3 to 0.062 0 0 1 018: dt: 0.1250, sse=199739.0, rms=1.946 (1.340%) maximum number of reductions reached, breaking from loop positioning took 1.5 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5820 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6166, nmarked2=110, nripped=6166 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=1 had to be increased for 243 vertices, nripped=6166 mean border=85.8, 182 (13) missing vertices, mean dist -0.1 [0.3 (%66.6)->0.2 (%33.4))] %89 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1138 min Finding expansion regions mean absolute distance = 0.27 +- 0.42 2179 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=548241.1, rms=4.354 019: dt: 0.5000, sse=360740.4, rms=3.125 (28.213%) rms = 3.4325/3.1253, sse=398827.9/360740.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 020: dt: 0.2500, sse=252231.3, rms=2.136 (31.664%) 021: dt: 0.2500, sse=213788.8, rms=1.644 (23.010%) 022: dt: 0.2500, sse=201170.0, rms=1.443 (12.261%) 023: dt: 0.2500, sse=198208.4, rms=1.383 (4.108%) rms = 1.3404/1.3834, sse=196210.7/198208.4, time step reduction 2 of 3 to 0.125 0 0 1 024: dt: 0.2500, sse=196210.7, rms=1.340 (3.105%) 025: dt: 0.1250, sse=192142.4, rms=1.264 (5.692%) rms = 1.2511/1.2641, sse=191972.4/192142.4, time step reduction 3 of 3 to 0.062 0 0 1 026: dt: 0.1250, sse=191972.4, rms=1.251 (1.030%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6166 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6258, nmarked2=111, nripped=6258 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 192 vertices, nripped=6258 mean border=87.1, 194 (9) missing vertices, mean dist -0.0 [0.2 (%50.0)->0.2 (%50.0))] %91 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0628 min Finding expansion regions mean absolute distance = 0.19 +- 0.33 2512 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=254491.7, rms=2.144 rms = 2.5571/2.1437, sse=297702.0/254491.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 027: dt: 0.2500, sse=206100.2, rms=1.500 (30.025%) 028: dt: 0.2500, sse=189933.4, rms=1.181 (21.246%) rms = 1.1526/1.1813, sse=187954.5/189933.4, time step reduction 2 of 3 to 0.125 0 0 1 029: dt: 0.2500, sse=187954.5, rms=1.153 (2.431%) 030: dt: 0.1250, sse=183974.4, rms=1.094 (5.122%) rms = 1.0868/1.0936, sse=183748.3/183974.4, time step reduction 3 of 3 to 0.062 0 0 1 031: dt: 0.1250, sse=183748.3, rms=1.087 (0.625%) maximum number of reductions reached, breaking from loop positioning took 0.5 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6258 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6290, nmarked2=111, nripped=6290 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 193 vertices, nripped=6290 mean border=87.5, 243 (5) missing vertices, mean dist -0.0 [0.2 (%39.2)->0.1 (%60.8))] %91 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0392 min Finding expansion regions mean absolute distance = 0.18 +- 0.31 2092 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=191378.0, rms=1.251 rms = 1.5021/1.2505, sse=208355.2/191378.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 032: dt: 0.2500, sse=177737.9, rms=0.950 (24.004%) 033: dt: 0.2500, sse=173822.7, rms=0.840 (11.572%) rms = 0.8434/0.8404, sse=173682.2/173822.7, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.8347/0.8404, sse=173541.8/173822.7, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=173541.8, rms=0.835 (0.680%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/lh.white.preaparc #ET# mris_place_surface 3.39 minutes #VMPC# mris_place_surfaces VmPeak 2074252 mris_place_surface done @#@FSTIME 2022:04:18:05:16:22 mris_place_surface N 18 e 265.16 S 2.49 U 262.62 P 99% M 1794552 F 0 R 728165 W 0 c 292 w 149 I 0 O 7672 L 25.06 25.13 25.17 @#@FSLOADPOST 2022:04:18:05:20:47 mris_place_surface N 18 25.30 25.18 25.18 #-------------------------------------------- #@# WhitePreAparc rh Mon Apr 18 05:20:47 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --wm wm.mgz --threads 1 --invol brain.finalsurfs.mgz --rh --i ../surf/rh.orig --o ../surf/rh.white.preaparc --white --seg aseg.presurf.mgz --nsmooth 5 Reading in input surface ../surf/rh.orig Smoothing surface with 5 iterations Area 216316 0.25436 0.06510 0.002207 0.5792 Corner 648948 60.00000 10.22225 9.887549 142.4481 Edge 324474 0.77003 0.12060 0.061622 1.3545 Hinge 324474 6.58952 7.33605 0.000035 138.4316 Not reading in aparc Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=0 MRIcopyHeader(): source has ctab removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5857, nmarked2=54, nripped=5857 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 54080: xyz = (47.2812,3.38405,5.0035) oxyz = (47.2812,3.38405,5.0035) wxzy = (47.2812,3.38405,5.0035) pxyz = (0,0,0) CBVO Creating mask 108160 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5857 removing 4 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=5857, nmarked2=54, nripped=5857 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=2 had to be increased for 237 vertices, nripped=5857 mean border=83.0, 63 (63) missing vertices, mean dist 0.3 [0.4 (%32.3)->0.6 (%67.7))] %82 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1611 min Finding expansion regions mean absolute distance = 0.54 +- 0.64 3308 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=2005150.2, rms=9.607 001: dt: 0.5000, sse=1048796.9, rms=6.773 (29.497%) 002: dt: 0.5000, sse=736940.2, rms=5.540 (18.207%) 003: dt: 0.5000, sse=582339.0, rms=4.809 (13.197%) 004: dt: 0.5000, sse=503387.1, rms=4.385 (8.809%) 005: dt: 0.5000, sse=454226.9, rms=4.096 (6.588%) 006: dt: 0.5000, sse=431573.1, rms=3.949 (3.592%) 007: dt: 0.5000, sse=415950.2, rms=3.843 (2.700%) 008: dt: 0.5000, sse=409693.6, rms=3.780 (1.634%) 009: dt: 0.5000, sse=402178.8, rms=3.725 (1.452%) rms = 3.6865/3.7249, sse=399684.1/402178.8, time step reduction 1 of 3 to 0.250 0 0 1 010: dt: 0.5000, sse=399684.1, rms=3.687 (1.030%) 011: dt: 0.2500, sse=220325.4, rms=2.226 (39.616%) 012: dt: 0.2500, sse=190926.0, rms=1.875 (15.788%) 013: dt: 0.2500, sse=183098.3, rms=1.769 (5.628%) 014: dt: 0.2500, sse=178110.3, rms=1.696 (4.113%) rms = 1.6529/1.6963, sse=175353.5/178110.3, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=175353.5, rms=1.653 (2.564%) 016: dt: 0.1250, sse=168629.2, rms=1.547 (6.421%) rms = 1.5263/1.5467, sse=167534.9/168629.2, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=167534.9, rms=1.526 (1.320%) maximum number of reductions reached, breaking from loop positioning took 1.3 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=5857 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 4 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6082, nmarked2=60, nripped=6082 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=1 had to be increased for 266 vertices, nripped=6082 mean border=86.0, 120 (2) missing vertices, mean dist -0.1 [0.3 (%66.6)->0.2 (%33.4))] %88 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1116 min Finding expansion regions mean absolute distance = 0.27 +- 0.44 2069 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=550269.2, rms=4.391 018: dt: 0.5000, sse=350261.8, rms=3.065 (30.195%) rms = 3.4673/3.0654, sse=404983.0/350261.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 019: dt: 0.2500, sse=243910.1, rms=2.059 (32.825%) 020: dt: 0.2500, sse=208711.6, rms=1.586 (22.992%) 021: dt: 0.2500, sse=197629.8, rms=1.400 (11.715%) rms = 1.3533/1.3999, sse=195003.9/197629.8, time step reduction 2 of 3 to 0.125 0 0 1 022: dt: 0.2500, sse=195003.9, rms=1.353 (3.335%) 023: dt: 0.1250, sse=189679.8, rms=1.254 (7.306%) rms = 1.2358/1.2544, sse=188269.9/189679.8, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=188269.9, rms=1.236 (1.479%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6082 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 1 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6112, nmarked2=61, nripped=6112 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 177 vertices, nripped=6112 mean border=87.2, 170 (1) missing vertices, mean dist -0.0 [0.2 (%49.4)->0.1 (%50.6))] %90 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0621 min Finding expansion regions mean absolute distance = 0.19 +- 0.35 2440 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=249165.5, rms=2.123 rms = 2.6294/2.1231, sse=304790.0/249165.5, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 025: dt: 0.2500, sse=202666.4, rms=1.474 (30.556%) 026: dt: 0.2500, sse=186932.6, rms=1.173 (20.457%) rms = 1.1400/1.1728, sse=186140.7/186932.6, time step reduction 2 of 3 to 0.125 0 0 1 027: dt: 0.2500, sse=186140.7, rms=1.140 (2.789%) 028: dt: 0.1250, sse=183500.6, rms=1.085 (4.816%) rms = 1.0779/1.0851, sse=183245.2/183500.6, time step reduction 3 of 3 to 0.062 0 0 1 029: dt: 0.1250, sse=183245.2, rms=1.078 (0.671%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Freezing midline and others Ripping frozen voxels INFO: rip surface needed but not specified, so using input surface Freezing midline and others Entering: MRISripMidline(): inhibiting deformation at non-cortical midline structures... which=1, fix_mtl=0, using annot = 0 #FML0# MRISripMidline(): nripped=6112 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 3 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 removing 2 vertices from ripped group in thread:0 #FML# MRISripMidline(): nmarked=6131, nmarked2=61, nripped=6131 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 247 247 247 247 MRISripSegs(): -2 2 0.5 ripped 0 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 194 vertices, nripped=6131 mean border=87.7, 226 (0) missing vertices, mean dist -0.0 [0.2 (%38.8)->0.1 (%61.2))] %91 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0391 min Finding expansion regions mean absolute distance = 0.18 +- 0.32 2188 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=191955.7, rms=1.264 rms = 1.5270/1.2642, sse=211154.7/191955.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 030: dt: 0.2500, sse=178379.0, rms=0.958 (24.184%) 031: dt: 0.2500, sse=175124.8, rms=0.849 (11.414%) rms = 0.8536/0.8491, sse=173427.1/175124.8, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 0.8439/0.8491, sse=173484.6/175124.8, time step reduction 3 of 3 to 0.062 0 0 1 032: dt: 0.1250, sse=173484.6, rms=0.844 (0.607%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes removing intersecting faces 000: 3 intersecting terminating search with 0 intersecting Writing output to ../surf/rh.white.preaparc #ET# mris_place_surface 3.14 minutes #VMPC# mris_place_surfaces VmPeak 1970800 mris_place_surface done @#@FSTIME 2022:04:18:05:20:47 mris_place_surface N 18 e 198.12 S 2.46 U 195.61 P 99% M 1690888 F 0 R 491307 W 0 c 173 w 278 I 0 O 7608 L 25.30 25.18 25.18 @#@FSLOADPOST 2022:04:18:05:24:05 mris_place_surface N 18 25.35 25.26 25.20 #-------------------------------------------- #@# CortexLabel lh Mon Apr 18 05:24:05 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 0 ../label/lh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 5 non-cortical segments detected only using segment with 6362 vertices erasing segment 0 (vno[0] = 16311) erasing segment 1 (vno[0] = 20629) erasing segment 3 (vno[0] = 56647) erasing segment 4 (vno[0] = 63641) @#@FSTIME 2022:04:18:05:24:06 mri_label2label N 5 e 14.07 S 0.42 U 13.59 P 99% M 409944 F 0 R 144042 W 0 c 20 w 142 I 0 O 8888 L 25.35 25.26 25.20 @#@FSLOADPOST 2022:04:18:05:24:20 mri_label2label N 5 25.37 25.26 25.21 #-------------------------------------------- #@# CortexLabel+HipAmyg lh Mon Apr 18 05:24:20 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_label2label --label-cortex ../surf/lh.white.preaparc aseg.presurf.mgz 1 ../label/lh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 7 non-cortical segments detected only using segment with 4667 vertices erasing segment 0 (vno[0] = 16311) erasing segment 1 (vno[0] = 20629) erasing segment 3 (vno[0] = 33048) erasing segment 4 (vno[0] = 33825) erasing segment 5 (vno[0] = 59678) erasing segment 6 (vno[0] = 63641) @#@FSTIME 2022:04:18:05:24:20 mri_label2label N 5 e 13.65 S 0.21 U 13.39 P 99% M 417512 F 0 R 116603 W 0 c 18 w 232 I 0 O 9032 L 25.37 25.26 25.21 @#@FSLOADPOST 2022:04:18:05:24:33 mri_label2label N 5 25.29 25.25 25.20 #-------------------------------------------- #@# CortexLabel rh Mon Apr 18 05:24:33 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 0 ../label/rh.cortex.label Generating cortex label... RemoveHipAmgy=0 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 5 non-cortical segments detected only using segment with 6258 vertices erasing segment 0 (vno[0] = 21594) erasing segment 2 (vno[0] = 51243) erasing segment 3 (vno[0] = 60927) erasing segment 4 (vno[0] = 107028) @#@FSTIME 2022:04:18:05:24:33 mri_label2label N 5 e 13.09 S 0.17 U 12.87 P 99% M 408676 F 0 R 114250 W 0 c 23 w 133 I 0 O 8608 L 25.29 25.25 25.20 @#@FSLOADPOST 2022:04:18:05:24:46 mri_label2label N 5 25.38 25.27 25.21 #-------------------------------------------- #@# CortexLabel+HipAmyg rh Mon Apr 18 05:24:47 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_label2label --label-cortex ../surf/rh.white.preaparc aseg.presurf.mgz 1 ../label/rh.cortex+hipamyg.label Generating cortex label... RemoveHipAmgy=1 NucAccIsMedialWall=0 mris->useRealRAS=0 MRIcopyHeader(): source has ctab 8 non-cortical segments detected only using segment with 4357 vertices erasing segment 0 (vno[0] = 21594) erasing segment 1 (vno[0] = 28850) erasing segment 3 (vno[0] = 32435) erasing segment 4 (vno[0] = 47399) erasing segment 5 (vno[0] = 53501) erasing segment 6 (vno[0] = 60927) erasing segment 7 (vno[0] = 107028) @#@FSTIME 2022:04:18:05:24:47 mri_label2label N 5 e 13.37 S 0.26 U 13.07 P 99% M 420156 F 0 R 117123 W 0 c 25 w 221 I 0 O 8768 L 25.38 25.27 25.21 @#@FSLOADPOST 2022:04:18:05:25:00 mri_label2label N 5 25.32 25.26 25.21 #-------------------------------------------- #@# Smooth2 lh Mon Apr 18 05:25:00 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2022:04:18:05:25:00 mris_smooth N 7 e 2.63 S 0.10 U 2.48 P 98% M 169632 F 0 R 50638 W 0 c 4 w 232 I 0 O 7680 L 25.32 25.26 25.21 @#@FSLOADPOST 2022:04:18:05:25:03 mris_smooth N 7 25.29 25.26 25.20 #-------------------------------------------- #@# Smooth2 rh Mon Apr 18 05:25:03 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... @#@FSTIME 2022:04:18:05:25:03 mris_smooth N 7 e 2.65 S 0.13 U 2.44 P 97% M 168256 F 0 R 50209 W 0 c 3 w 269 I 0 O 7608 L 25.29 25.26 25.20 @#@FSLOADPOST 2022:04:18:05:25:05 mris_smooth N 7 25.27 25.25 25.20 #-------------------------------------------- #@# Inflation2 lh Mon Apr 18 05:25:05 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated Reading ../surf/lh.smoothwm avg radius = 41.1 mm, total surface area = 65785 mm^2 resetting # of iterations to 13 for highres volume step 000: RMS=0.177 (target=0.015) step 005: RMS=0.120 (target=0.015) step 010: RMS=0.093 (target=0.015) step 015: RMS=0.079 (target=0.015) step 020: RMS=0.066 (target=0.015) step 025: RMS=0.055 (target=0.015) step 030: RMS=0.046 (target=0.015) step 035: RMS=0.040 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.031 (target=0.015) step 050: RMS=0.028 (target=0.015) step 055: RMS=0.026 (target=0.015) step 060: RMS=0.024 (target=0.015) step 065: RMS=0.023 (target=0.015) step 070: RMS=0.022 (target=0.015) step 075: RMS=0.022 (target=0.015) writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc inflation complete. inflation took 0.5 minutes mris_inflate utimesec 26.555016 mris_inflate stimesec 1.011962 mris_inflate ru_maxrss 169628 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 546387 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8536 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 291 mris_inflate ru_nivcsw 36 @#@FSTIME 2022:04:18:05:25:06 mris_inflate N 2 e 27.71 S 1.01 U 26.55 P 99% M 169628 F 0 R 546388 W 0 c 36 w 293 I 0 O 8536 L 25.27 25.25 25.20 @#@FSLOADPOST 2022:04:18:05:25:33 mris_inflate N 2 25.32 25.26 25.21 #-------------------------------------------- #@# Inflation2 rh Mon Apr 18 05:25:33 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated Reading ../surf/rh.smoothwm avg radius = 40.9 mm, total surface area = 65257 mm^2 resetting # of iterations to 13 for highres volume step 000: RMS=0.178 (target=0.015) step 005: RMS=0.119 (target=0.015) step 010: RMS=0.094 (target=0.015) step 015: RMS=0.080 (target=0.015) step 020: RMS=0.067 (target=0.015) step 025: RMS=0.056 (target=0.015) step 030: RMS=0.046 (target=0.015) step 035: RMS=0.039 (target=0.015) step 040: RMS=0.034 (target=0.015) step 045: RMS=0.030 (target=0.015) step 050: RMS=0.027 (target=0.015) step 055: RMS=0.026 (target=0.015) step 060: RMS=0.024 (target=0.015) step 065: RMS=0.023 (target=0.015) step 070: RMS=0.022 (target=0.015) step 075: RMS=0.021 (target=0.015) writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc inflation complete. inflation took 0.4 minutes mris_inflate utimesec 25.728239 mris_inflate stimesec 0.087987 mris_inflate ru_maxrss 168848 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 44847 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 8464 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 264 mris_inflate ru_nivcsw 18 @#@FSTIME 2022:04:18:05:25:33 mris_inflate N 2 e 25.86 S 0.09 U 25.72 P 99% M 169252 F 0 R 44849 W 0 c 18 w 265 I 0 O 8464 L 25.32 25.26 25.21 @#@FSLOADPOST 2022:04:18:05:25:59 mris_inflate N 2 25.42 25.29 25.22 #-------------------------------------------- #@# Curv .H and .K lh Mon Apr 18 05:25:59 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_curvature -w -seed 1234 lh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 19.817*4pi (249.028) --> -19 handles ICI = 133.0, FI = 1454.5, variation=22410.729 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. @#@FSTIME 2022:04:18:05:25:59 mris_curvature N 4 e 1.33 S 0.04 U 1.27 P 98% M 126512 F 0 R 34225 W 0 c 3 w 129 I 0 O 1712 L 25.42 25.29 25.22 @#@FSLOADPOST 2022:04:18:05:26:01 mris_curvature N 4 25.38 25.29 25.22 rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H rm -f lh.white.K ln -s lh.white.preaparc.K lh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 126 vertices thresholded to be in k1 ~ [-0.45 1.40], k2 ~ [-0.22 0.13] total integrated curvature = 0.530*4pi (6.660) --> 0 handles ICI = 1.2, FI = 6.0, variation=109.009 102 vertices thresholded to be in [-0.06 0.04] writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 88 vertices thresholded to be in [-0.23 0.33] done. writing mean curvature to ./lh.inflated.H...curvature mean = -0.018, std = 0.021 done. @#@FSTIME 2022:04:18:05:26:01 mris_curvature N 12 e 36.35 S 0.19 U 36.14 P 99% M 296808 F 0 R 76940 W 0 c 64 w 119 I 0 O 1712 L 25.38 25.29 25.22 @#@FSLOADPOST 2022:04:18:05:26:37 mris_curvature N 12 24.88 25.17 25.18 #-------------------------------------------- #@# Curv .H and .K rh Mon Apr 18 05:26:37 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 17.460*4pi (219.410) --> -16 handles ICI = 130.5, FI = 1390.6, variation=21572.049 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. @#@FSTIME 2022:04:18:05:26:37 mris_curvature N 4 e 1.29 S 0.08 U 1.20 P 98% M 125268 F 0 R 33915 W 0 c 4 w 115 I 0 O 1696 L 24.88 25.17 25.18 @#@FSLOADPOST 2022:04:18:05:26:39 mris_curvature N 4 24.88 25.17 25.18 rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -seed 1234 -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated setting seed for random number generator to 1234 normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 97 vertices thresholded to be in k1 ~ [-0.88 0.17], k2 ~ [-0.17 0.20] total integrated curvature = 0.414*4pi (5.199) --> 1 handles ICI = 1.1, FI = 6.4, variation=113.101 91 vertices thresholded to be in [-0.07 0.04] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.002 81 vertices thresholded to be in [-0.27 0.09] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.019, std = 0.022 done. @#@FSTIME 2022:04:18:05:26:39 mris_curvature N 12 e 35.89 S 0.16 U 35.72 P 99% M 294500 F 0 R 76294 W 0 c 48 w 119 I 0 O 1696 L 24.88 25.17 25.18 @#@FSLOADPOST 2022:04:18:05:27:15 mris_curvature N 12 24.49 25.04 25.13 #-------------------------------------------- #@# Sphere lh Mon Apr 18 05:27:15 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.319... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %42.42 pass 1: epoch 2 of 3 starting distance error %21.62 unfolding complete - removing small folds... starting distance error %21.40 removing remaining folds... final distance error %21.45 MRISunfold() return, current seed 1234 -01: dt=0.0000, 46 negative triangles VmPeak 514564 167: dt=0.9900, 46 negative triangles 168: dt=0.9900, 31 negative triangles 169: dt=0.9900, 28 negative triangles 170: dt=0.9900, 26 negative triangles 171: dt=0.9900, 23 negative triangles 172: dt=0.9900, 25 negative triangles 173: dt=0.9900, 23 negative triangles 174: dt=0.9900, 25 negative triangles 175: dt=0.9900, 22 negative triangles 176: dt=0.9900, 23 negative triangles 177: dt=0.9900, 23 negative triangles 178: dt=0.9900, 24 negative triangles 179: dt=0.9900, 21 negative triangles 180: dt=0.9900, 21 negative triangles 181: dt=0.9900, 22 negative triangles 182: dt=0.9900, 21 negative triangles 183: dt=0.9900, 20 negative triangles 184: dt=0.9900, 20 negative triangles 185: dt=0.9900, 20 negative triangles 186: dt=0.9900, 21 negative triangles 187: dt=0.9900, 19 negative triangles 188: dt=0.9900, 19 negative triangles 189: dt=0.9900, 19 negative triangles 190: dt=0.9900, 19 negative triangles 191: dt=0.9900, 18 negative triangles 192: dt=0.9900, 17 negative triangles 193: dt=0.9900, 17 negative triangles 194: dt=0.9900, 17 negative triangles 195: dt=0.9900, 18 negative triangles 196: dt=0.9900, 17 negative triangles 197: dt=0.9900, 16 negative triangles 198: dt=0.9900, 16 negative triangles 199: dt=0.9900, 17 negative triangles 200: dt=0.9900, 17 negative triangles 201: dt=0.9900, 18 negative triangles 202: dt=0.9900, 17 negative triangles 203: dt=0.9900, 18 negative triangles 204: dt=0.9900, 16 negative triangles 205: dt=0.9900, 16 negative triangles 206: dt=0.9900, 17 negative triangles 207: dt=0.9405, 17 negative triangles 208: dt=0.9405, 17 negative triangles 209: dt=0.9405, 15 negative triangles 210: dt=0.9405, 14 negative triangles 211: dt=0.9405, 15 negative triangles 212: dt=0.9405, 16 negative triangles 213: dt=0.9405, 17 negative triangles 214: dt=0.9405, 17 negative triangles 215: dt=0.9405, 16 negative triangles 216: dt=0.9405, 16 negative triangles 217: dt=0.9405, 16 negative triangles 218: dt=0.9405, 15 negative triangles 219: dt=0.9405, 17 negative triangles 220: dt=0.8935, 16 negative triangles 221: dt=0.8935, 16 negative triangles 222: dt=0.8935, 16 negative triangles 223: dt=0.8935, 15 negative triangles 224: dt=0.8935, 20 negative triangles 225: dt=0.8935, 16 negative triangles 226: dt=0.8935, 15 negative triangles 227: dt=0.8935, 16 negative triangles 228: dt=0.8935, 17 negative triangles 229: dt=0.8935, 20 negative triangles 230: dt=0.8488, 18 negative triangles 231: dt=0.8488, 18 negative triangles 232: dt=0.8488, 18 negative triangles 233: dt=0.8488, 20 negative triangles 234: dt=0.8488, 17 negative triangles 235: dt=0.8488, 18 negative triangles 236: dt=0.8488, 20 negative triangles 237: dt=0.8488, 18 negative triangles 238: dt=0.8488, 19 negative triangles 239: dt=0.8488, 20 negative triangles 240: dt=0.8064, 20 negative triangles 241: dt=0.8064, 18 negative triangles 242: dt=0.8064, 19 negative triangles 243: dt=0.8064, 21 negative triangles 244: dt=0.8064, 19 negative triangles 245: dt=0.8064, 18 negative triangles 246: dt=0.8064, 20 negative triangles 247: dt=0.8064, 19 negative triangles 248: dt=0.8064, 20 negative triangles 249: dt=0.8064, 21 negative triangles 250: dt=0.7660, 20 negative triangles 251: dt=0.7660, 20 negative triangles 252: dt=0.7660, 21 negative triangles 253: dt=0.7660, 20 negative triangles 254: dt=0.7660, 17 negative triangles 255: dt=0.7660, 21 negative triangles 256: dt=0.7660, 18 negative triangles 257: dt=0.7660, 19 negative triangles 258: dt=0.7660, 19 negative triangles 259: dt=0.7660, 18 negative triangles 260: dt=0.7277, 21 negative triangles expanding nbhd size to 1 261: dt=0.9900, 18 negative triangles 262: dt=0.9900, 18 negative triangles 263: dt=0.9900, 19 negative triangles 264: dt=0.9900, 19 negative triangles 265: dt=0.9900, 18 negative triangles 266: dt=0.9900, 19 negative triangles 267: dt=0.9900, 18 negative triangles 268: dt=0.9900, 19 negative triangles 269: dt=0.9900, 19 negative triangles 270: dt=0.9405, 20 negative triangles 271: dt=0.9405, 19 negative triangles 272: dt=0.9405, 19 negative triangles 273: dt=0.9405, 18 negative triangles 274: dt=0.9405, 16 negative triangles 275: dt=0.9405, 17 negative triangles 276: dt=0.9405, 16 negative triangles 277: dt=0.9405, 17 negative triangles 278: dt=0.9405, 18 negative triangles 279: dt=0.9405, 19 negative triangles 280: dt=0.8935, 21 negative triangles 281: dt=0.8935, 19 negative triangles 282: dt=0.8935, 21 negative triangles 283: dt=0.8935, 19 negative triangles 284: dt=0.8935, 19 negative triangles 285: dt=0.8935, 19 negative triangles 286: dt=0.8935, 19 negative triangles 287: dt=0.8935, 20 negative triangles 288: dt=0.8935, 21 negative triangles 289: dt=0.8935, 21 negative triangles 290: dt=0.8488, 18 negative triangles 291: dt=0.8488, 19 negative triangles 292: dt=0.8488, 19 negative triangles 293: dt=0.8488, 20 negative triangles 294: dt=0.8488, 18 negative triangles 295: dt=0.8488, 19 negative triangles 296: dt=0.8488, 20 negative triangles 297: dt=0.8488, 18 negative triangles 298: dt=0.8488, 18 negative triangles 299: dt=0.8488, 20 negative triangles 300: dt=0.8064, 19 negative triangles 301: dt=0.8064, 19 negative triangles 302: dt=0.8064, 20 negative triangles 303: dt=0.8064, 20 negative triangles 304: dt=0.8064, 20 negative triangles 305: dt=0.8064, 19 negative triangles 306: dt=0.8064, 18 negative triangles 307: dt=0.8064, 19 negative triangles 308: dt=0.8064, 19 negative triangles 309: dt=0.8064, 19 negative triangles 310: dt=0.7660, 19 negative triangles 311: dt=0.7660, 18 negative triangles 312: dt=0.7660, 17 negative triangles 313: dt=0.7660, 19 negative triangles 314: dt=0.7660, 18 negative triangles 315: dt=0.7660, 20 negative triangles 316: dt=0.7660, 19 negative triangles 317: dt=0.7660, 19 negative triangles 318: dt=0.7660, 18 negative triangles 319: dt=0.7660, 18 negative triangles 320: dt=0.7277, 19 negative triangles 321: dt=0.7277, 18 negative triangles 322: dt=0.7277, 19 negative triangles 323: dt=0.7277, 18 negative triangles 324: dt=0.7277, 19 negative triangles 325: dt=0.7277, 19 negative triangles 326: dt=0.7277, 18 negative triangles 327: dt=0.7277, 18 negative triangles 328: dt=0.7277, 17 negative triangles 329: dt=0.7277, 19 negative triangles 330: dt=0.6914, 19 negative triangles 331: dt=0.6914, 20 negative triangles 332: dt=0.6914, 19 negative triangles 333: dt=0.6914, 20 negative triangles 334: dt=0.6914, 20 negative triangles 335: dt=0.6914, 20 negative triangles 336: dt=0.6914, 19 negative triangles 337: dt=0.6914, 19 negative triangles 338: dt=0.6914, 18 negative triangles 339: dt=0.6914, 19 negative triangles 340: dt=0.6568, 18 negative triangles 341: dt=0.6568, 18 negative triangles 342: dt=0.6568, 20 negative triangles 343: dt=0.6568, 19 negative triangles 344: dt=0.6568, 20 negative triangles 345: dt=0.6568, 19 negative triangles 346: dt=0.6568, 18 negative triangles 347: dt=0.6568, 20 negative triangles 348: dt=0.6568, 21 negative triangles 349: dt=0.6568, 19 negative triangles 350: dt=0.6239, 20 negative triangles 351: dt=0.6239, 20 negative triangles 352: dt=0.6239, 19 negative triangles 353: dt=0.6239, 20 negative triangles 354: dt=0.6239, 19 negative triangles 355: dt=0.6239, 19 negative triangles 356: dt=0.6239, 18 negative triangles 357: dt=0.6239, 16 negative triangles 358: dt=0.6239, 16 negative triangles 359: dt=0.6239, 20 negative triangles 360: dt=0.5927, 20 negative triangles 361: dt=0.5927, 16 negative triangles 362: dt=0.5927, 20 negative triangles 363: dt=0.5927, 18 negative triangles 364: dt=0.5927, 19 negative triangles 365: dt=0.5927, 17 negative triangles 366: dt=0.5927, 19 negative triangles 367: dt=0.5927, 17 negative triangles 368: dt=0.5927, 17 negative triangles 369: dt=0.5927, 17 negative triangles 370: dt=0.5631, 19 negative triangles 371: dt=0.5631, 17 negative triangles 372: dt=0.5631, 16 negative triangles 373: dt=0.5631, 19 negative triangles 374: dt=0.5631, 19 negative triangles 375: dt=0.5631, 18 negative triangles 376: dt=0.5631, 19 negative triangles 377: dt=0.5631, 17 negative triangles 378: dt=0.5631, 17 negative triangles 379: dt=0.5631, 19 negative triangles 380: dt=0.5350, 17 negative triangles 381: dt=0.5350, 19 negative triangles 382: dt=0.5350, 18 negative triangles 383: dt=0.5350, 18 negative triangles 384: dt=0.5350, 18 negative triangles 385: dt=0.5350, 17 negative triangles 386: dt=0.5350, 19 negative triangles 387: dt=0.5350, 18 negative triangles 388: dt=0.5350, 19 negative triangles 389: dt=0.5350, 16 negative triangles 390: dt=0.5082, 19 negative triangles 391: dt=0.5082, 18 negative triangles 392: dt=0.5082, 17 negative triangles 393: dt=0.5082, 19 negative triangles 394: dt=0.5082, 19 negative triangles 395: dt=0.5082, 18 negative triangles 396: dt=0.5082, 19 negative triangles 397: dt=0.5082, 18 negative triangles 398: dt=0.5082, 18 negative triangles 399: dt=0.5082, 19 negative triangles 400: dt=0.4828, 17 negative triangles 401: dt=0.4828, 17 negative triangles 402: dt=0.4828, 17 negative triangles 403: dt=0.4828, 17 negative triangles 404: dt=0.4828, 18 negative triangles 405: dt=0.4828, 19 negative triangles 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14 negative triangles 984: dt=0.0246, 15 negative triangles 985: dt=0.0246, 16 negative triangles 986: dt=0.0246, 16 negative triangles 987: dt=0.0246, 16 negative triangles 988: dt=0.0246, 15 negative triangles 989: dt=0.0246, 15 negative triangles 990: dt=0.0234, 15 negative triangles 991: dt=0.0234, 14 negative triangles 992: dt=0.0234, 14 negative triangles 993: dt=0.0234, 14 negative triangles 994: dt=0.0234, 14 negative triangles 995: dt=0.0234, 14 negative triangles 996: dt=0.0234, 14 negative triangles 997: dt=0.0234, 14 negative triangles 998: dt=0.0234, 15 negative triangles 999: dt=0.0234, 15 negative triangles 1000: dt=0.0222, 15 negative triangles 1001: dt=0.0222, 15 negative triangles 1002: dt=0.0222, 15 negative triangles 1003: dt=0.0222, 15 negative triangles 1004: dt=0.0222, 15 negative triangles 1005: dt=0.0222, 15 negative triangles 1006: dt=0.0222, 16 negative triangles 1007: dt=0.0222, 16 negative triangles 1008: dt=0.0222, 15 negative triangles 1009: dt=0.0222, 15 negative triangles 1010: dt=0.0211, 16 negative triangles 1011: dt=0.0211, 16 negative triangles 1012: dt=0.0211, 17 negative triangles 1013: dt=0.0211, 17 negative triangles 1014: dt=0.0211, 18 negative triangles 1015: dt=0.0211, 18 negative triangles 1016: dt=0.0211, 18 negative triangles 1017: dt=0.0211, 18 negative triangles 1018: dt=0.0211, 17 negative triangles 1019: dt=0.0211, 17 negative triangles 1020: dt=0.0201, 17 negative triangles 1021: dt=0.0201, 17 negative triangles 1022: dt=0.0201, 16 negative triangles 1023: dt=0.0201, 16 negative triangles 1024: dt=0.0201, 16 negative triangles 1025: dt=0.0201, 17 negative triangles 1026: dt=0.0201, 17 negative triangles 1027: dt=0.0201, 17 negative triangles 1028: dt=0.0201, 16 negative triangles 1029: dt=0.0201, 14 negative triangles 1030: dt=0.0191, 15 negative triangles 1031: dt=0.0191, 15 negative triangles 1032: dt=0.0191, 15 negative triangles 1033: dt=0.0191, 16 negative triangles 1034: dt=0.0191, 16 negative triangles 1035: dt=0.0191, 16 negative triangles 1036: dt=0.0191, 16 negative triangles 1037: dt=0.0191, 16 negative triangles 1038: dt=0.0191, 16 negative triangles 1039: dt=0.0191, 17 negative triangles 1040: dt=0.0181, 17 negative triangles 1041: dt=0.0181, 17 negative triangles 1042: dt=0.0181, 16 negative triangles 1043: dt=0.0181, 17 negative triangles 1044: dt=0.0181, 15 negative triangles 1045: dt=0.0181, 15 negative triangles 1046: dt=0.0181, 15 negative triangles 1047: dt=0.0181, 16 negative triangles 1048: dt=0.0181, 15 negative triangles 1049: dt=0.0181, 16 negative triangles 1050: dt=0.0172, 16 negative triangles 1051: dt=0.0172, 16 negative triangles 1052: dt=0.0172, 16 negative triangles 1053: dt=0.0172, 15 negative triangles 1054: dt=0.0172, 15 negative triangles 1055: dt=0.0172, 16 negative triangles 1056: dt=0.0172, 16 negative triangles 1057: dt=0.0172, 15 negative triangles 1058: dt=0.0172, 15 negative triangles 1059: dt=0.0172, 15 negative triangles 1060: dt=0.0164, 15 negative triangles 1061: dt=0.0164, 16 negative triangles 1062: dt=0.0164, 16 negative triangles 1063: dt=0.0164, 16 negative triangles 1064: dt=0.0164, 15 negative triangles 1065: dt=0.0164, 15 negative triangles 1066: dt=0.0164, 15 negative triangles 1067: dt=0.0164, 15 negative triangles 1068: dt=0.0164, 13 negative triangles 1069: dt=0.0164, 15 negative triangles 1070: dt=0.0164, 14 negative triangles 1071: dt=0.0164, 14 negative triangles 1072: dt=0.0164, 14 negative triangles 1073: dt=0.0164, 15 negative triangles 1074: dt=0.0164, 14 negative triangles 1075: dt=0.0164, 14 negative triangles 1076: dt=0.0164, 15 negative triangles 1077: dt=0.0164, 14 negative triangles 1078: dt=0.0155, 14 negative triangles 1079: dt=0.0155, 14 negative triangles 1080: dt=0.0155, 14 negative triangles 1081: dt=0.0155, 14 negative triangles 1082: dt=0.0155, 13 negative triangles 1083: dt=0.0155, 13 negative triangles 1084: dt=0.0155, 14 negative triangles 1085: dt=0.0155, 13 negative triangles 1086: dt=0.0155, 13 negative triangles 1087: dt=0.0155, 14 negative triangles 1088: dt=0.0148, 13 negative triangles 1089: dt=0.0148, 13 negative triangles 1090: dt=0.0148, 13 negative triangles 1091: dt=0.0148, 13 negative triangles 1092: dt=0.0148, 13 negative triangles 1093: dt=0.0148, 13 negative triangles 1094: dt=0.0148, 14 negative triangles 1095: dt=0.0148, 13 negative triangles 1096: dt=0.0148, 13 negative triangles 1097: dt=0.0148, 13 negative triangles 1098: dt=0.0140, 13 negative triangles 1099: dt=0.0140, 13 negative triangles 1100: dt=0.0140, 13 negative triangles 1101: dt=0.0140, 13 negative triangles 1102: dt=0.0140, 13 negative triangles 1103: dt=0.0140, 13 negative triangles 1104: dt=0.0140, 13 negative triangles 1105: dt=0.0140, 14 negative triangles 1106: dt=0.0140, 13 negative triangles 1107: dt=0.0140, 13 negative triangles 1108: dt=0.0133, 13 negative triangles 1109: dt=0.0133, 13 negative triangles 1110: dt=0.0133, 13 negative triangles 1111: dt=0.0133, 13 negative triangles 1112: dt=0.0133, 13 negative triangles 1113: dt=0.0133, 13 negative triangles 1114: dt=0.0133, 13 negative triangles 1115: dt=0.0133, 13 negative triangles 1116: dt=0.0133, 13 negative triangles 1117: dt=0.0133, 13 negative triangles 1118: dt=0.0127, 13 negative triangles 1119: dt=0.0127, 13 negative triangles 1120: dt=0.0127, 13 negative triangles 1121: dt=0.0127, 13 negative triangles 1122: dt=0.0127, 13 negative triangles 1123: dt=0.0127, 13 negative triangles 1124: dt=0.0127, 13 negative triangles 1125: dt=0.0127, 13 negative triangles 1126: dt=0.0127, 13 negative triangles 1127: dt=0.0127, 13 negative triangles 1128: dt=0.0120, 13 negative triangles 1129: dt=0.0120, 13 negative triangles 1130: dt=0.0120, 13 negative triangles 1131: dt=0.0120, 13 negative triangles 1132: dt=0.0120, 13 negative triangles 1133: dt=0.0120, 13 negative triangles 1134: dt=0.0120, 13 negative triangles 1135: dt=0.0120, 13 negative triangles 1136: dt=0.0120, 13 negative triangles 1137: dt=0.0120, 13 negative triangles 1138: dt=0.0114, 13 negative triangles 1139: dt=0.0114, 13 negative triangles 1140: dt=0.0114, 14 negative triangles 1141: dt=0.0114, 14 negative triangles 1142: dt=0.0114, 14 negative triangles 1143: dt=0.0114, 14 negative triangles 1144: dt=0.0114, 14 negative triangles 1145: dt=0.0114, 14 negative triangles 1146: dt=0.0114, 14 negative triangles 1147: dt=0.0114, 14 negative triangles 1148: dt=0.0108, 14 negative triangles 1149: dt=0.0108, 14 negative triangles 1150: dt=0.0108, 14 negative triangles 1151: dt=0.0108, 14 negative triangles 1152: dt=0.0108, 14 negative triangles 1153: dt=0.0108, 14 negative triangles 1154: dt=0.0108, 14 negative triangles 1155: dt=0.0108, 14 negative triangles 1156: dt=0.0108, 14 negative triangles 1157: dt=0.0108, 14 negative triangles 1158: dt=0.0103, 14 negative triangles 1159: dt=0.0103, 14 negative triangles 1160: dt=0.0103, 14 negative triangles 1161: dt=0.0103, 14 negative triangles 1162: dt=0.0103, 14 negative triangles 1163: dt=0.0103, 14 negative triangles 1164: dt=0.0103, 14 negative triangles 1165: dt=0.0103, 14 negative triangles 1166: dt=0.0103, 14 negative triangles 1167: dt=0.0103, 14 negative triangles 1168: 14 negative triangles writing spherical brain to ../surf/lh.sphere spherical transformation took 0.2852 hours FSRUNTIME@ mris_sphere 0.2852 hours 1 threads #VMPC# mris_sphere VmPeak 514564 mris_sphere done @#@FSTIME 2022:04:18:05:27:15 mris_sphere N 4 e 1026.58 S 45.29 U 981.24 P 99% M 226324 F 0 R 23204438 W 0 c 1344 w 125 I 0 O 7680 L 24.49 25.04 25.13 @#@FSLOADPOST 2022:04:18:05:44:21 mris_sphere N 4 23.12 23.29 23.99 #-------------------------------------------- #@# Sphere rh Mon Apr 18 05:44:21 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 version: 7.2.0 available threads: 1 reading original vertex positions... projecting onto sphere... surface projected - minimizing metric distortion... scaling brain by 0.319... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %41.12 pass 1: epoch 2 of 3 starting distance error %21.09 unfolding complete - removing small folds... starting distance error %20.77 removing remaining folds... final distance error %20.82 MRISunfold() return, current seed 1234 -01: dt=0.0000, 20 negative triangles VmPeak 512696 212: dt=0.9900, 20 negative triangles 213: dt=0.9900, 9 negative triangles 214: dt=0.9900, 2 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.1556 hours FSRUNTIME@ mris_sphere 0.1556 hours 1 threads #VMPC# mris_sphere VmPeak 512696 mris_sphere done @#@FSTIME 2022:04:18:05:44:21 mris_sphere N 4 e 560.37 S 24.14 U 536.14 P 99% M 224548 F 0 R 12482246 W 0 c 751 w 219 I 0 O 7616 L 23.03 23.27 23.98 @#@FSLOADPOST 2022:04:18:05:53:42 mris_sphere N 4 22.31 22.59 23.33 #-------------------------------------------- #@# Surf Reg lh Mon Apr 18 05:53:42 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_register -curv ../surf/lh.sphere /usr/local/pkg/freesurfer7.2/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts cmdline mris_register -curv ../surf/lh.sphere /usr/local/pkg/freesurfer7.2/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.2.0 7.2.0 reading surface from ../surf/lh.sphere... reading template parameterization from /usr/local/pkg/freesurfer7.2/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc tol=1.0e+00, sigma=0.5, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.917 curvature mean = 0.057, std = 0.810 curvature mean = 0.006, std = 0.895 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (4.50, -6.00, 19.50) sse = 155243.9, elapsed since starting=0.3038 min MRISrigidBodyAlignGlobal() done 0.30 min curvature mean = 0.040, std = 0.853 curvature mean = 0.003, std = 0.960 curvature mean = 0.038, std = 0.865 curvature mean = 0.001, std = 0.984 curvature mean = 0.038, std = 0.869 curvature mean = 0.000, std = 0.994 2 Reading smoothwm curvature mean = -0.027, std = 0.323 curvature mean = 0.050, std = 0.248 curvature mean = 0.053, std = 0.342 curvature mean = 0.040, std = 0.311 curvature mean = 0.037, std = 0.506 curvature mean = 0.039, std = 0.340 curvature mean = 0.020, std = 0.640 curvature mean = 0.039, std = 0.352 curvature mean = 0.006, std = 0.755 MRISregister() return, current seed 0 -01: dt=0.0000, 21 negative triangles VmPeak 511196 104: dt=0.9900, 21 negative triangles expanding nbhd size to 1 105: dt=0.9900, 22 negative triangles 106: dt=0.9900, 20 negative triangles 107: dt=0.9900, 23 negative triangles 108: dt=0.9900, 21 negative triangles 109: dt=0.9900, 21 negative triangles 110: dt=0.9900, 20 negative triangles 111: dt=0.9900, 18 negative triangles 112: dt=0.9900, 18 negative triangles 113: dt=0.9900, 18 negative triangles 114: dt=0.9900, 18 negative triangles 115: dt=0.9900, 17 negative triangles 116: dt=0.9900, 17 negative triangles 117: dt=0.9900, 17 negative triangles 118: dt=0.9900, 17 negative triangles 119: dt=0.9900, 17 negative triangles 120: dt=0.9900, 18 negative triangles 121: dt=0.9900, 17 negative triangles 122: dt=0.9900, 17 negative triangles 123: dt=0.9900, 17 negative triangles 124: dt=0.9900, 17 negative triangles 125: dt=0.9405, 17 negative triangles 126: dt=0.9405, 17 negative triangles 127: dt=0.9405, 18 negative triangles 128: dt=0.9405, 17 negative triangles 129: dt=0.9405, 17 negative triangles 130: dt=0.9405, 17 negative triangles 131: dt=0.9405, 17 negative triangles 132: dt=0.9405, 19 negative triangles 133: dt=0.9405, 17 negative triangles 134: dt=0.9405, 16 negative triangles 135: dt=0.9405, 16 negative triangles 136: dt=0.9405, 18 negative triangles 137: dt=0.9405, 18 negative triangles 138: dt=0.9405, 20 negative triangles 139: dt=0.9405, 17 negative triangles 140: dt=0.9405, 17 negative triangles 141: dt=0.9405, 16 negative triangles 142: dt=0.9405, 17 negative triangles 143: dt=0.9405, 17 negative triangles 144: dt=0.8935, 16 negative triangles 145: dt=0.8935, 20 negative triangles 146: dt=0.8935, 20 negative triangles 147: dt=0.8935, 18 negative triangles 148: dt=0.8935, 17 negative triangles 149: dt=0.8935, 17 negative triangles 150: dt=0.8935, 19 negative triangles 151: dt=0.8935, 18 negative triangles 152: dt=0.8935, 17 negative triangles 153: dt=0.8935, 17 negative triangles 154: dt=0.8935, 15 negative triangles 155: dt=0.8935, 17 negative triangles 156: dt=0.8935, 18 negative triangles 157: dt=0.8935, 19 negative triangles 158: dt=0.8935, 18 negative triangles 159: dt=0.8935, 18 negative triangles 160: dt=0.8935, 16 negative triangles 161: dt=0.8935, 14 negative triangles 162: dt=0.8935, 17 negative triangles 163: dt=0.8935, 18 negative triangles 164: dt=0.8935, 15 negative triangles 165: dt=0.8935, 19 negative triangles 166: dt=0.8935, 17 negative triangles 167: dt=0.8935, 18 negative triangles 168: dt=0.8935, 18 negative triangles 169: dt=0.8935, 17 negative triangles 170: dt=0.8935, 19 negative triangles 171: dt=0.8488, 16 negative triangles 172: dt=0.8488, 16 negative triangles 173: dt=0.8488, 17 negative triangles 174: dt=0.8488, 18 negative triangles 175: dt=0.8488, 18 negative triangles 176: dt=0.8488, 16 negative triangles 177: dt=0.8488, 17 negative triangles 178: dt=0.8488, 19 negative triangles 179: dt=0.8488, 18 negative triangles 180: dt=0.8488, 19 negative triangles 181: dt=0.8064, 15 negative triangles 182: dt=0.8064, 17 negative triangles 183: dt=0.8064, 17 negative triangles 184: dt=0.8064, 15 negative triangles 185: dt=0.8064, 17 negative triangles 186: dt=0.8064, 17 negative triangles 187: dt=0.8064, 16 negative triangles 188: dt=0.8064, 15 negative triangles 189: dt=0.8064, 18 negative triangles 190: dt=0.8064, 17 negative triangles 191: dt=0.7660, 16 negative triangles 192: dt=0.7660, 16 negative triangles 193: dt=0.7660, 16 negative triangles 194: dt=0.7660, 17 negative triangles 195: dt=0.7660, 18 negative triangles 196: dt=0.7660, 17 negative triangles 197: dt=0.7660, 17 negative triangles 198: dt=0.7660, 16 negative triangles 199: dt=0.7660, 20 negative triangles 200: dt=0.7660, 18 negative triangles 201: dt=0.7277, 18 negative triangles 202: dt=0.7277, 17 negative triangles 203: dt=0.7277, 16 negative triangles 204: dt=0.7277, 17 negative triangles 205: dt=0.7277, 16 negative triangles 206: dt=0.7277, 14 negative triangles 207: dt=0.7277, 16 negative triangles 208: dt=0.7277, 16 negative triangles 209: dt=0.7277, 16 negative triangles 210: dt=0.7277, 15 negative triangles 211: dt=0.6914, 19 negative triangles 212: dt=0.6914, 17 negative triangles 213: dt=0.6914, 17 negative triangles 214: dt=0.6914, 17 negative triangles 215: dt=0.6914, 15 negative triangles 216: dt=0.6914, 16 negative triangles 217: dt=0.6914, 19 negative triangles 218: dt=0.6914, 15 negative triangles 219: dt=0.6914, 18 negative triangles 220: dt=0.6914, 17 negative triangles 221: dt=0.6568, 16 negative triangles 222: dt=0.6568, 16 negative triangles 223: dt=0.6568, 19 negative triangles 224: dt=0.6568, 18 negative triangles 225: dt=0.6568, 18 negative triangles 226: dt=0.6568, 18 negative triangles 227: dt=0.6568, 19 negative triangles 228: dt=0.6568, 16 negative triangles 229: dt=0.6568, 19 negative triangles 230: dt=0.6568, 18 negative triangles 231: dt=0.6239, 17 negative triangles 232: dt=0.6239, 17 negative triangles 233: dt=0.6239, 19 negative triangles 234: dt=0.6239, 19 negative triangles 235: dt=0.6239, 18 negative triangles 236: dt=0.6239, 17 negative triangles 237: dt=0.6239, 18 negative triangles 238: dt=0.6239, 18 negative triangles 239: dt=0.6239, 18 negative triangles 240: dt=0.6239, 15 negative triangles 241: dt=0.5927, 16 negative triangles 242: dt=0.5927, 15 negative triangles 243: dt=0.5927, 17 negative triangles 244: dt=0.5927, 17 negative triangles 245: dt=0.5927, 19 negative triangles 246: dt=0.5927, 17 negative triangles 247: dt=0.5927, 16 negative triangles 248: dt=0.5927, 20 negative triangles 249: dt=0.5927, 17 negative triangles 250: dt=0.5927, 15 negative triangles 251: dt=0.5631, 17 negative triangles 252: dt=0.5631, 16 negative triangles 253: dt=0.5631, 18 negative triangles 254: dt=0.5631, 15 negative triangles 255: dt=0.5631, 18 negative triangles 256: dt=0.5631, 18 negative triangles 257: dt=0.5631, 18 negative triangles 258: dt=0.5631, 19 negative triangles 259: dt=0.5631, 16 negative triangles 260: dt=0.5631, 19 negative triangles 261: dt=0.5350, 16 negative triangles 262: dt=0.5350, 16 negative triangles 263: dt=0.5350, 15 negative triangles 264: dt=0.5350, 16 negative triangles 265: dt=0.5350, 16 negative triangles 266: dt=0.5350, 19 negative triangles 267: dt=0.5350, 20 negative triangles 268: dt=0.5350, 14 negative triangles 269: dt=0.5350, 18 negative triangles 270: dt=0.5350, 16 negative triangles 271: dt=0.5082, 15 negative triangles 272: dt=0.5082, 16 negative triangles 273: dt=0.5082, 15 negative triangles 274: dt=0.5082, 19 negative triangles 275: dt=0.5082, 15 negative triangles 276: dt=0.5082, 17 negative triangles 277: dt=0.5082, 19 negative triangles 278: dt=0.5082, 18 negative triangles 279: dt=0.5082, 17 negative triangles 280: dt=0.5082, 18 negative triangles 281: dt=0.4828, 19 negative triangles 282: dt=0.4828, 18 negative triangles 283: dt=0.4828, 18 negative triangles 284: dt=0.4828, 18 negative triangles 285: dt=0.4828, 18 negative triangles 286: dt=0.4828, 17 negative triangles 287: dt=0.4828, 16 negative triangles 288: dt=0.4828, 17 negative triangles 289: dt=0.4828, 16 negative triangles 290: dt=0.4828, 16 negative triangles 291: dt=0.4587, 15 negative triangles 292: dt=0.4587, 14 negative triangles 293: dt=0.4587, 12 negative triangles 294: dt=0.4587, 13 negative triangles 295: dt=0.4587, 14 negative triangles 296: dt=0.4587, 16 negative triangles 297: dt=0.4587, 14 negative triangles 298: dt=0.4587, 12 negative triangles 299: dt=0.4587, 13 negative triangles 300: dt=0.4587, 12 negative triangles 301: dt=0.4587, 13 negative triangles 302: dt=0.4587, 12 negative triangles 303: dt=0.4357, 15 negative triangles 304: dt=0.4357, 13 negative triangles 305: dt=0.4357, 13 negative triangles 306: dt=0.4357, 13 negative triangles 307: dt=0.4357, 13 negative triangles 308: dt=0.4357, 14 negative triangles 309: dt=0.4357, 14 negative triangles 310: dt=0.4357, 15 negative triangles 311: dt=0.4357, 12 negative triangles 312: dt=0.4357, 13 negative triangles 313: dt=0.4139, 16 negative triangles 314: dt=0.4139, 15 negative triangles 315: dt=0.4139, 14 negative triangles 316: dt=0.4139, 17 negative triangles 317: dt=0.4139, 18 negative triangles 318: dt=0.4139, 15 negative triangles 319: dt=0.4139, 13 negative triangles 320: dt=0.4139, 12 negative triangles 321: dt=0.4139, 13 negative triangles 322: dt=0.4139, 13 negative triangles 323: dt=0.3932, 15 negative triangles 324: dt=0.3932, 13 negative triangles 325: dt=0.3932, 13 negative triangles 326: dt=0.3932, 15 negative triangles 327: dt=0.3932, 15 negative triangles 328: dt=0.3932, 14 negative triangles 329: dt=0.3932, 12 negative triangles 330: dt=0.3932, 12 negative triangles 331: dt=0.3932, 13 negative triangles 332: dt=0.3932, 14 negative triangles 333: dt=0.3736, 13 negative triangles 334: dt=0.3736, 13 negative triangles 335: dt=0.3736, 14 negative triangles 336: dt=0.3736, 15 negative triangles 337: dt=0.3736, 14 negative triangles 338: dt=0.3736, 15 negative triangles 339: dt=0.3736, 18 negative triangles 340: dt=0.3736, 16 negative triangles 341: dt=0.3736, 16 negative triangles 342: dt=0.3736, 16 negative triangles 343: dt=0.3549, 16 negative triangles 344: dt=0.3549, 16 negative triangles 345: dt=0.3549, 15 negative triangles 346: dt=0.3549, 16 negative triangles 347: dt=0.3549, 16 negative triangles 348: dt=0.3549, 15 negative triangles 349: dt=0.3549, 11 negative triangles 350: dt=0.3549, 12 negative triangles 351: dt=0.3549, 12 negative triangles 352: dt=0.3549, 14 negative triangles 353: dt=0.3549, 15 negative triangles 354: dt=0.3549, 15 negative triangles 355: dt=0.3549, 12 negative triangles 356: dt=0.3549, 12 negative triangles 357: dt=0.3549, 13 negative triangles 358: dt=0.3549, 14 negative triangles 359: dt=0.3372, 12 negative triangles 360: dt=0.3372, 13 negative triangles 361: dt=0.3372, 15 negative triangles 362: dt=0.3372, 13 negative triangles 363: dt=0.3372, 12 negative triangles 364: dt=0.3372, 13 negative triangles 365: 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dt=0.0234, 13 negative triangles 891: dt=0.0234, 13 negative triangles 892: dt=0.0234, 13 negative triangles 893: dt=0.0234, 13 negative triangles 894: dt=0.0234, 13 negative triangles 895: dt=0.0234, 13 negative triangles 896: dt=0.0234, 13 negative triangles 897: dt=0.0222, 13 negative triangles 898: dt=0.0222, 12 negative triangles 899: dt=0.0222, 12 negative triangles 900: dt=0.0222, 12 negative triangles 901: dt=0.0222, 12 negative triangles 902: dt=0.0222, 12 negative triangles 903: dt=0.0222, 12 negative triangles 904: dt=0.0222, 12 negative triangles 905: dt=0.0222, 12 negative triangles 906: dt=0.0222, 12 negative triangles 907: dt=0.0211, 12 negative triangles 908: dt=0.0211, 12 negative triangles 909: dt=0.0211, 12 negative triangles 910: dt=0.0211, 12 negative triangles 911: dt=0.0211, 12 negative triangles 912: dt=0.0211, 12 negative triangles 913: dt=0.0211, 12 negative triangles 914: dt=0.0211, 12 negative triangles 915: dt=0.0211, 12 negative triangles 916: dt=0.0211, 12 negative triangles 917: dt=0.0201, 12 negative triangles 918: dt=0.0201, 12 negative triangles 919: dt=0.0201, 12 negative triangles 920: dt=0.0201, 12 negative triangles 921: dt=0.0201, 12 negative triangles 922: dt=0.0201, 12 negative triangles 923: dt=0.0201, 12 negative triangles 924: dt=0.0201, 12 negative triangles 925: dt=0.0201, 12 negative triangles 926: dt=0.0201, 12 negative triangles 927: dt=0.0191, 12 negative triangles 928: dt=0.0191, 12 negative triangles 929: dt=0.0191, 12 negative triangles 930: dt=0.0191, 12 negative triangles 931: dt=0.0191, 12 negative triangles 932: dt=0.0191, 12 negative triangles 933: dt=0.0191, 12 negative triangles 934: dt=0.0191, 12 negative triangles 935: dt=0.0191, 12 negative triangles 936: dt=0.0191, 12 negative triangles 937: dt=0.0181, 12 negative triangles 938: dt=0.0181, 12 negative triangles 939: dt=0.0181, 12 negative triangles 940: dt=0.0181, 12 negative triangles 941: dt=0.0181, 12 negative triangles 942: dt=0.0181, 12 negative triangles 943: dt=0.0181, 12 negative triangles 944: dt=0.0181, 12 negative triangles 945: dt=0.0181, 12 negative triangles 946: dt=0.0181, 13 negative triangles 947: dt=0.0172, 13 negative triangles 948: dt=0.0172, 13 negative triangles 949: dt=0.0172, 13 negative triangles 950: dt=0.0172, 12 negative triangles 951: dt=0.0172, 12 negative triangles 952: dt=0.0172, 12 negative triangles 953: dt=0.0172, 12 negative triangles 954: dt=0.0172, 12 negative triangles 955: dt=0.0172, 12 negative triangles 956: dt=0.0172, 12 negative triangles 957: dt=0.0164, 12 negative triangles 958: dt=0.0164, 12 negative triangles 959: dt=0.0164, 12 negative triangles 960: dt=0.0164, 12 negative triangles 961: dt=0.0164, 12 negative triangles 962: dt=0.0164, 12 negative triangles 963: dt=0.0164, 12 negative triangles 964: dt=0.0164, 12 negative triangles 965: dt=0.0164, 12 negative triangles 966: dt=0.0164, 12 negative triangles 967: dt=0.0155, 12 negative triangles 968: dt=0.0155, 12 negative triangles 969: dt=0.0155, 12 negative triangles 970: dt=0.0155, 12 negative triangles 971: dt=0.0155, 12 negative triangles 972: dt=0.0155, 12 negative triangles 973: dt=0.0155, 12 negative triangles 974: dt=0.0155, 12 negative triangles 975: dt=0.0155, 12 negative triangles 976: dt=0.0155, 12 negative triangles 977: dt=0.0148, 12 negative triangles 978: dt=0.0148, 12 negative triangles 979: dt=0.0148, 12 negative triangles 980: dt=0.0148, 12 negative triangles 981: dt=0.0148, 12 negative triangles 982: dt=0.0148, 12 negative triangles 983: dt=0.0148, 12 negative triangles 984: dt=0.0148, 12 negative triangles 985: dt=0.0148, 12 negative triangles 986: dt=0.0148, 12 negative triangles 987: dt=0.0140, 12 negative triangles 988: dt=0.0140, 12 negative triangles 989: dt=0.0140, 12 negative triangles 990: dt=0.0140, 12 negative triangles 991: dt=0.0140, 12 negative triangles 992: dt=0.0140, 12 negative triangles 993: dt=0.0140, 12 negative triangles 994: dt=0.0140, 12 negative triangles 995: dt=0.0140, 12 negative triangles 996: dt=0.0140, 12 negative triangles 997: dt=0.0133, 12 negative triangles 998: dt=0.0133, 12 negative triangles 999: dt=0.0133, 12 negative triangles 1000: dt=0.0133, 12 negative triangles 1001: dt=0.0133, 12 negative triangles 1002: dt=0.0133, 12 negative triangles 1003: dt=0.0133, 12 negative triangles 1004: dt=0.0133, 12 negative triangles 1005: dt=0.0133, 12 negative triangles 1006: dt=0.0133, 12 negative triangles 1007: dt=0.0127, 12 negative triangles 1008: dt=0.0127, 12 negative triangles 1009: dt=0.0127, 12 negative triangles 1010: dt=0.0127, 12 negative triangles 1011: dt=0.0127, 12 negative triangles 1012: dt=0.0127, 12 negative triangles 1013: dt=0.0127, 12 negative triangles 1014: dt=0.0127, 12 negative triangles 1015: dt=0.0127, 12 negative triangles 1016: dt=0.0127, 12 negative triangles 1017: dt=0.0120, 12 negative triangles 1018: dt=0.0120, 12 negative triangles 1019: dt=0.0120, 12 negative triangles 1020: dt=0.0120, 12 negative triangles 1021: dt=0.0120, 12 negative triangles 1022: dt=0.0120, 12 negative triangles 1023: dt=0.0120, 12 negative triangles 1024: dt=0.0120, 12 negative triangles 1025: dt=0.0120, 12 negative triangles 1026: dt=0.0120, 12 negative triangles 1027: dt=0.0114, 12 negative triangles 1028: dt=0.0114, 12 negative triangles 1029: dt=0.0114, 12 negative triangles 1030: dt=0.0114, 12 negative triangles 1031: dt=0.0114, 12 negative triangles 1032: dt=0.0114, 12 negative triangles 1033: dt=0.0114, 12 negative triangles 1034: dt=0.0114, 12 negative triangles 1035: dt=0.0114, 12 negative triangles 1036: dt=0.0114, 12 negative triangles 1037: dt=0.0108, 12 negative triangles 1038: dt=0.0108, 12 negative triangles 1039: dt=0.0108, 12 negative triangles 1040: dt=0.0108, 12 negative triangles 1041: dt=0.0108, 12 negative triangles 1042: dt=0.0108, 12 negative triangles 1043: dt=0.0108, 12 negative triangles 1044: dt=0.0108, 12 negative triangles 1045: dt=0.0108, 12 negative triangles 1046: dt=0.0108, 12 negative triangles 1047: dt=0.0103, 12 negative triangles 1048: dt=0.0103, 12 negative triangles 1049: dt=0.0103, 12 negative triangles 1050: dt=0.0103, 12 negative triangles 1051: dt=0.0103, 12 negative triangles 1052: dt=0.0103, 12 negative triangles 1053: dt=0.0103, 12 negative triangles 1054: dt=0.0103, 12 negative triangles 1055: dt=0.0103, 12 negative triangles 1056: dt=0.0103, 12 negative triangles 1057: dt=0.0098, 12 negative triangles 1058: dt=0.0098, 12 negative triangles 1059: dt=0.0098, 12 negative triangles 1060: dt=0.0098, 12 negative triangles 1061: dt=0.0098, 12 negative triangles 1062: dt=0.0098, 12 negative triangles 1063: dt=0.0098, 12 negative triangles 1064: dt=0.0098, 12 negative triangles 1065: dt=0.0098, 12 negative triangles 1066: dt=0.0098, 12 negative triangles 1067: dt=0.0098, 12 negative triangles 1068: dt=0.0098, 12 negative triangles 1069: dt=0.0098, 12 negative triangles 1070: dt=0.0098, 12 negative triangles 1071: dt=0.0098, 12 negative triangles 1072: dt=0.0098, 12 negative triangles 1073: dt=0.0098, 12 negative triangles 1074: dt=0.0098, 12 negative triangles 1075: dt=0.0098, 12 negative triangles 1076: dt=0.0098, 12 negative triangles 1077: dt=0.0098, 12 negative triangles 1078: dt=0.0098, 12 negative triangles 1079: dt=0.0098, 12 negative triangles 1080: dt=0.0098, 12 negative triangles 1081: dt=0.0098, 12 negative triangles 1082: dt=0.0098, 12 negative triangles 1083: dt=0.0098, 12 negative triangles 1084: dt=0.0098, 12 negative triangles 1085: dt=0.0098, 12 negative triangles 1086: dt=0.0098, 12 negative triangles 1087: dt=0.0098, 12 negative triangles 1088: dt=0.0098, 12 negative triangles 1089: dt=0.0098, 12 negative triangles 1090: dt=0.0098, 12 negative triangles 1091: dt=0.0098, 12 negative triangles 1092: dt=0.0098, 12 negative triangles 1093: dt=0.0098, 12 negative triangles 1094: dt=0.0098, 12 negative triangles 1095: dt=0.0098, 12 negative triangles 1096: dt=0.0098, 12 negative triangles 1097: dt=0.0098, 12 negative triangles 1098: dt=0.0098, 12 negative triangles 1099: dt=0.0098, 12 negative triangles 1100: dt=0.0098, 12 negative triangles 1101: dt=0.0098, 12 negative triangles 1102: dt=0.0098, 12 negative triangles 1103: dt=0.0098, 12 negative triangles writing registered surface to ../surf/lh.sphere.reg... 1104: dt=0.0098, 12 negative triangles 1105: 12 negative triangles registration took 0.20 hours #VMPC# mris_register VmPeak 511196 FSRUNTIME@ mris_register 0.2013 hours 1 threads @#@FSTIME 2022:04:18:05:53:42 mris_register N 4 e 724.85 S 34.14 U 690.61 P 99% M 223620 F 0 R 17377199 W 0 c 921 w 161 I 0 O 7680 L 22.31 22.59 23.33 @#@FSLOADPOST 2022:04:18:06:05:47 mris_register N 4 22.16 22.18 22.68 ln -sf lh.sphere.reg lh.fsaverage.sphere.reg #-------------------------------------------- #@# Surf Reg rh Mon Apr 18 06:05:47 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_register -curv ../surf/rh.sphere /usr/local/pkg/freesurfer7.2/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts cmdline mris_register -curv ../surf/rh.sphere /usr/local/pkg/freesurfer7.2/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) 7.2.0 7.2.0 reading surface from ../surf/rh.sphere... reading template parameterization from /usr/local/pkg/freesurfer7.2/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc tol=1.0e+00, sigma=0.5, host=hoppe, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization curvature mean = -0.000, std = 5.942 curvature mean = 0.052, std = 0.809 curvature mean = 0.006, std = 0.901 Starting MRISrigidBodyAlignGlobal() Starting new MRISrigidBodyAlignGlobal_findMinSSE() new MRISrigidBodyAlignGlobal_findMinSSE min @ (7.00, -7.00, 23.50) sse = 179873.8, elapsed since starting=0.3009 min MRISrigidBodyAlignGlobal() done 0.30 min curvature mean = 0.033, std = 0.850 curvature mean = 0.002, std = 0.961 curvature mean = 0.031, std = 0.862 curvature mean = 0.001, std = 0.984 curvature mean = 0.031, std = 0.866 curvature mean = 0.000, std = 0.994 2 Reading smoothwm curvature mean = -0.029, std = 0.323 curvature mean = 0.044, std = 0.243 curvature mean = 0.054, std = 0.344 curvature mean = 0.034, std = 0.306 curvature mean = 0.038, std = 0.510 curvature mean = 0.033, std = 0.334 curvature mean = 0.020, std = 0.645 curvature mean = 0.032, std = 0.346 curvature mean = 0.006, std = 0.761 MRISregister() return, current seed 0 -01: dt=0.0000, 5 negative triangles VmPeak 508336 107: dt=0.9900, 5 negative triangles expanding nbhd size to 1 108: dt=0.9900, 5 negative triangles 109: dt=0.9900, 2 negative triangles 110: dt=0.9900, 4 negative triangles 111: dt=0.9900, 2 negative triangles 112: dt=0.9900, 2 negative triangles 113: dt=0.9900, 1 negative triangles 114: dt=0.9900, 1 negative triangles 115: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.12 hours #VMPC# mris_register VmPeak 508336 FSRUNTIME@ mris_register 0.1196 hours 1 threads @#@FSTIME 2022:04:18:06:05:47 mris_register N 4 e 430.50 S 9.45 U 420.99 P 99% M 220460 F 0 R 4525888 W 0 c 488 w 96 I 0 O 7616 L 22.16 22.18 22.68 @#@FSLOADPOST 2022:04:18:06:12:57 mris_register N 4 22.58 22.39 22.59 ln -sf rh.sphere.reg rh.fsaverage.sphere.reg #-------------------------------------------- #@# Jacobian white lh Mon Apr 18 06:12:57 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white.preaparc... writing curvature file ../surf/lh.jacobian_white @#@FSTIME 2022:04:18:06:12:57 mris_jacobian N 3 e 1.18 S 0.12 U 1.05 P 99% M 168984 F 0 R 50578 W 0 c 4 w 45 I 0 O 856 L 22.58 22.39 22.59 @#@FSLOADPOST 2022:04:18:06:12:58 mris_jacobian N 3 22.53 22.39 22.58 #-------------------------------------------- #@# Jacobian white rh Mon Apr 18 06:12:59 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white @#@FSTIME 2022:04:18:06:12:59 mris_jacobian N 3 e 1.01 S 0.07 U 0.92 P 99% M 167172 F 0 R 50144 W 0 c 1 w 56 I 0 O 848 L 22.53 22.39 22.58 @#@FSLOADPOST 2022:04:18:06:13:00 mris_jacobian N 3 22.53 22.39 22.58 #-------------------------------------------- #@# AvgCurv lh Mon Apr 18 06:13:00 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mrisp_paint -a 5 /usr/local/pkg/freesurfer7.2/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /usr/local/pkg/freesurfer7.2/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/lh.avg_curv... @#@FSTIME 2022:04:18:06:13:00 mrisp_paint N 5 e 0.81 S 0.08 U 0.72 P 98% M 131400 F 0 R 35485 W 0 c 2 w 67 I 0 O 856 L 22.53 22.39 22.58 @#@FSLOADPOST 2022:04:18:06:13:00 mrisp_paint N 5 22.53 22.39 22.58 #-------------------------------------------- #@# AvgCurv rh Mon Apr 18 06:13:00 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mrisp_paint -a 5 /usr/local/pkg/freesurfer7.2/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /usr/local/pkg/freesurfer7.2/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... @#@FSTIME 2022:04:18:06:13:01 mrisp_paint N 5 e 0.78 S 0.06 U 0.71 P 98% M 130504 F 0 R 35198 W 0 c 3 w 66 I 0 O 848 L 22.53 22.39 22.58 @#@FSLOADPOST 2022:04:18:06:13:01 mrisp_paint N 5 22.53 22.39 22.58 #----------------------------------------- #@# Cortical Parc lh Mon Apr 18 06:13:01 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 lh ../surf/lh.sphere.reg /usr/local/pkg/freesurfer7.2/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.8 using min determinant for regularization = 0.006 0 singular and 342 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1206 labels changed using aseg relabeling using gibbs priors... 000: 2644 changed, 109079 examined... 001: 620 changed, 11135 examined... 002: 147 changed, 3534 examined... 003: 46 changed, 915 examined... 004: 16 changed, 279 examined... 005: 5 changed, 95 examined... 006: 0 changed, 33 examined... 232 labels changed using aseg 000: 101 total segments, 54 labels (176 vertices) changed 001: 50 total segments, 9 labels (24 vertices) changed 002: 40 total segments, 0 labels (0 vertices) changed 9 filter iterations complete (10 requested, 0 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1692 vertices marked for relabeling... 1692 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2022:04:18:06:13:01 mris_ca_label N 11 e 10.14 S 0.69 U 9.43 P 99% M 1087096 F 0 R 386246 W 0 c 21 w 109 I 0 O 1712 L 22.53 22.39 22.58 @#@FSLOADPOST 2022:04:18:06:13:12 mris_ca_label N 11 22.53 22.39 22.58 #----------------------------------------- #@# Cortical Parc rh Mon Apr 18 06:13:12 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 rh ../surf/rh.sphere.reg /usr/local/pkg/freesurfer7.2/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1150 labels changed using aseg relabeling using gibbs priors... 000: 2406 changed, 108160 examined... 001: 543 changed, 10627 examined... 002: 125 changed, 3071 examined... 003: 41 changed, 760 examined... 004: 19 changed, 260 examined... 005: 10 changed, 119 examined... 006: 2 changed, 55 examined... 007: 2 changed, 13 examined... 008: 1 changed, 14 examined... 009: 0 changed, 7 examined... 137 labels changed using aseg 000: 78 total segments, 41 labels (198 vertices) changed 001: 39 total segments, 2 labels (2 vertices) changed 002: 37 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 4 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1636 vertices marked for relabeling... 1636 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2022:04:18:06:13:12 mris_ca_label N 11 e 9.83 S 0.72 U 9.07 P 99% M 993592 F 0 R 346041 W 0 c 16 w 124 I 8608 O 1696 L 22.53 22.39 22.58 @#@FSLOADPOST 2022:04:18:06:13:21 mris_ca_label N 11 22.45 22.38 22.57 #-------------------------------------------- #@# WhiteSurfs lh Mon Apr 18 06:13:21 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc --o ../surf/lh.white --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-surf ../surf/lh.white.preaparc --aparc ../label/lh.aparc.annot Reading in input surface ../surf/lh.white.preaparc Not smoothing input surface Area 218154 0.33432 0.13544 0.000315 2.9956 Corner 654462 60.00000 15.64648 0.210092 178.9442 Edge 327231 0.89192 0.22440 0.014331 3.6164 Hinge 327231 10.46519 13.02397 0.000032 179.9621 Reading in aparc ../label/lh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex.label Reading in ripping surface ../surf/lh.white.preaparc Reading in aparc ../label/lh.aparc.annot for ripsurf Ripping BG MRIcopyHeader(): source has ctab MRISripBasalGanglia(): -2 2 0.5 ripped 963 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 54540: xyz = (-52.0583,1.75188,-37.2257) oxyz = (-52.0583,1.75188,-37.2257) wxzy = (-52.0583,1.75188,-37.2257) pxyz = (0,0,0) CBVO Creating mask 109079 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=2 had to be increased for 307 vertices, nripped=7659 mean border=81.9, 181 (181) missing vertices, mean dist 0.3 [0.7 (%8.2)->0.4 (%91.8))] %78 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1477 min Finding expansion regions mean absolute distance = 0.43 +- 0.61 2548 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=1148694.4, rms=6.998 001: dt: 0.5000, sse=486102.0, rms=4.048 (42.163%) 002: dt: 0.5000, sse=412566.2, rms=3.570 (11.795%) rms = 3.5629/3.5703, sse=412334.2/412566.2, time step reduction 1 of 3 to 0.250 0 0 1 003: dt: 0.5000, sse=412334.2, rms=3.563 (0.207%) 004: dt: 0.2500, sse=255012.9, rms=2.196 (38.366%) 005: dt: 0.2500, sse=237567.3, rms=1.984 (9.659%) 006: dt: 0.2500, sse=230997.6, rms=1.893 (4.577%) rms = 1.8470/1.8931, sse=228059.2/230997.6, time step reduction 2 of 3 to 0.125 0 0 1 007: dt: 0.2500, sse=228059.2, rms=1.847 (2.436%) 008: dt: 0.1250, sse=223750.5, rms=1.784 (3.383%) rms = 1.7681/1.7845, sse=222866.5/223750.5, time step reduction 3 of 3 to 0.062 0 0 1 009: dt: 0.1250, sse=222866.5, rms=1.768 (0.920%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=1 had to be increased for 242 vertices, nripped=7659 mean border=85.5, 161 (41) missing vertices, mean dist -0.2 [0.3 (%72.1)->0.2 (%27.9))] %87 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1103 min Finding expansion regions mean absolute distance = 0.28 +- 0.44 2178 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=580818.2, rms=4.515 010: dt: 0.5000, sse=372932.3, rms=3.169 (29.824%) rms = 3.4306/3.1686, sse=405258.9/372932.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 011: dt: 0.2500, sse=268288.2, rms=2.221 (29.897%) 012: dt: 0.2500, sse=230160.3, rms=1.750 (21.195%) 013: dt: 0.2500, sse=216965.0, rms=1.557 (11.050%) 014: dt: 0.2500, sse=213379.8, rms=1.500 (3.682%) rms = 1.4584/1.4997, sse=211011.5/213379.8, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=211011.5, rms=1.458 (2.759%) 016: dt: 0.1250, sse=207201.8, rms=1.391 (4.644%) rms = 1.3772/1.3906, sse=206517.8/207201.7, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=206517.8, rms=1.377 (0.964%) maximum number of reductions reached, breaking from loop positioning took 0.7 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 193 vertices, nripped=7659 mean border=86.8, 192 (18) missing vertices, mean dist -0.1 [0.2 (%51.0)->0.1 (%49.0))] %89 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0601 min Finding expansion regions mean absolute distance = 0.20 +- 0.35 2485 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=267630.4, rms=2.253 rms = 2.6327/2.2528, sse=315911.1/267630.4, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=219639.3, rms=1.631 (27.580%) 019: dt: 0.2500, sse=202335.3, rms=1.321 (19.000%) rms = 1.2847/1.3215, sse=200150.0/202335.3, time step reduction 2 of 3 to 0.125 0 0 1 020: dt: 0.2500, sse=200150.0, rms=1.285 (2.780%) rms = 1.2362/1.2847, sse=197683.0/200150.0, time step reduction 3 of 3 to 0.062 0 0 1 021: dt: 0.1250, sse=197683.0, rms=1.236 (3.776%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 222 vertices, nripped=7659 mean border=87.3, 267 (14) missing vertices, mean dist -0.0 [0.2 (%39.8)->0.1 (%60.2))] %90 local maxima, % 2 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0378 min Finding expansion regions mean absolute distance = 0.18 +- 0.32 2204 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=206262.3, rms=1.411 rms = 1.6697/1.4111, sse=228953.0/206262.3, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 022: dt: 0.2500, sse=193631.4, rms=1.159 (17.832%) 023: dt: 0.2500, sse=190674.6, rms=1.076 (7.209%) rms = 1.0805/1.0759, sse=190081.5/190674.6, time step reduction 2 of 3 to 0.125 0 0 1 RMS increased, rejecting step rms = 1.0712/1.0759, sse=190142.9/190674.6, time step reduction 3 of 3 to 0.062 0 0 1 024: dt: 0.1250, sse=190142.9, rms=1.071 (0.433%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/lh.white #ET# mris_place_surface 2.45 minutes #VMPC# mris_place_surfaces VmPeak 1871504 mris_place_surface done @#@FSTIME 2022:04:18:06:13:22 mris_place_surface N 25 e 157.42 S 2.09 U 155.28 P 99% M 1591908 F 0 R 478254 W 0 c 120 w 322 I 0 O 7672 L 22.45 22.38 22.57 @#@FSLOADPOST 2022:04:18:06:15:59 mris_place_surface N 25 21.46 22.09 22.44 #-------------------------------------------- #@# WhiteSurfs rh Mon Apr 18 06:15:59 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white.preaparc --o ../surf/rh.white --white --nsmooth 0 --rip-label ../label/rh.cortex.label --rip-bg --rip-surf ../surf/rh.white.preaparc --aparc ../label/rh.aparc.annot Reading in input surface ../surf/rh.white.preaparc Not smoothing input surface Area 216316 0.33415 0.13239 0.000506 1.5382 Corner 648948 60.00000 15.64018 0.424867 178.5236 Edge 324474 0.89196 0.22093 0.014541 3.3013 Hinge 324474 10.48923 12.93267 0.000021 179.8250 Reading in aparc ../label/rh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for white surface MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex.label Reading in ripping surface ../surf/rh.white.preaparc Reading in aparc ../label/rh.aparc.annot for ripsurf Ripping BG MRIcopyHeader(): source has ctab MRISripBasalGanglia(): -2 2 0.5 ripped 958 Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRISripSegs(): -2 2 0.5 ripped 0 vertex 54080: xyz = (47.2857,3.53072,5.37982) oxyz = (47.2857,3.53072,5.37982) wxzy = (47.2857,3.53072,5.37982) pxyz = (0,0,0) CBVO Creating mask 108160 n_averages 4 Iteration 0 ========================================= n_averages=4, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=2 had to be increased for 290 vertices, nripped=7466 mean border=82.1, 105 (105) missing vertices, mean dist 0.3 [0.8 (%7.6)->0.4 (%92.4))] %77 local maxima, %16 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1488 min Finding expansion regions mean absolute distance = 0.44 +- 0.64 2341 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=4, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=1130072.8, rms=6.957 001: dt: 0.5000, sse=464265.5, rms=3.938 (43.398%) 002: dt: 0.5000, sse=403179.2, rms=3.526 (10.453%) rms = 3.5718/3.5261, sse=410696.8/403179.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 003: dt: 0.2500, sse=286759.8, rms=2.568 (27.175%) 004: dt: 0.2500, sse=246445.0, rms=2.132 (16.987%) 005: dt: 0.2500, sse=231892.4, rms=1.948 (8.604%) 006: dt: 0.2500, sse=228834.0, rms=1.895 (2.715%) 007: dt: 0.2500, sse=226733.1, rms=1.837 (3.100%) rms = 1.7918/1.8366, sse=222303.3/226733.1, time step reduction 2 of 3 to 0.125 0 0 1 008: dt: 0.2500, sse=222303.3, rms=1.792 (2.439%) 009: dt: 0.1250, sse=217779.5, rms=1.723 (3.816%) rms = 1.6947/1.7234, sse=216697.9/217779.5, time step reduction 3 of 3 to 0.062 0 0 1 010: dt: 0.1250, sse=216697.9, rms=1.695 (1.665%) maximum number of reductions reached, breaking from loop positioning took 0.8 minutes Iteration 1 ========================================= n_averages=2, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=1 had to be increased for 258 vertices, nripped=7466 mean border=85.6, 133 (16) missing vertices, mean dist -0.2 [0.3 (%71.7)->0.2 (%28.3))] %86 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1098 min Finding expansion regions mean absolute distance = 0.29 +- 0.46 1778 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=2, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=583934.4, rms=4.552 011: dt: 0.5000, sse=359549.8, rms=3.032 (33.387%) rms = 3.3909/3.0324, sse=399400.7/359549.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 012: dt: 0.2500, sse=256999.4, rms=2.058 (32.134%) 013: dt: 0.2500, sse=217997.2, rms=1.571 (23.686%) 014: dt: 0.2500, sse=204565.6, rms=1.367 (12.981%) rms = 1.3188/1.3666, sse=202598.3/204565.6, time step reduction 2 of 3 to 0.125 0 0 1 015: dt: 0.2500, sse=202598.3, rms=1.319 (3.500%) 016: dt: 0.1250, sse=198132.0, rms=1.222 (7.314%) rms = 1.2051/1.2224, sse=197574.0/198131.9, time step reduction 3 of 3 to 0.062 0 0 1 017: dt: 0.1250, sse=197574.0, rms=1.205 (1.408%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 2 ========================================= n_averages=1, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 177 vertices, nripped=7466 mean border=87.0, 219 (5) missing vertices, mean dist -0.0 [0.2 (%50.4)->0.2 (%49.6))] %89 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0610 min Finding expansion regions mean absolute distance = 0.20 +- 0.36 2016 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=1, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=255765.6, rms=2.124 rms = 2.6146/2.1243, sse=314245.3/255765.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 018: dt: 0.2500, sse=208821.4, rms=1.453 (31.620%) 019: dt: 0.2500, sse=195236.1, rms=1.125 (22.567%) rms = 1.0864/1.1248, sse=193547.9/195236.1, time step reduction 2 of 3 to 0.125 0 0 1 020: dt: 0.2500, sse=193547.9, rms=1.086 (3.415%) 021: dt: 0.1250, sse=190661.1, rms=1.025 (5.652%) rms = 1.0201/1.0250, sse=196747.9/190661.1, time step reduction 3 of 3 to 0.062 0 1 1 022: dt: 0.1250, sse=196747.9, rms=1.020 (0.477%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Iteration 3 ========================================= n_averages=0, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 120.0000000; border_hi = 115.8753970; border_low = 70.0000000; outside_low = 60.9759330; outside_hi = 115.8753970; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 1 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 173 vertices, nripped=7466 mean border=87.5, 290 (4) missing vertices, mean dist -0.0 [0.2 (%39.3)->0.1 (%60.7))] %90 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0375 min Finding expansion regions mean absolute distance = 0.19 +- 0.32 2242 vertices more than 2 sigmas from mean. Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 5, l_surf_repulse = 0, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=0, nbrs=2, l_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=204609.9, rms=1.210 rms = 1.5021/1.2103, sse=222328.5/204609.9, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 023: dt: 0.2500, sse=190798.1, rms=0.902 (25.437%) rms = 0.8059/0.9024, sse=194371.3/190798.1, time step reduction 2 of 3 to 0.125 0 1 0 024: dt: 0.2500, sse=194371.3, rms=0.806 (10.691%) rms = 0.8046/0.8059, sse=180802.4/194371.3, time step reduction 3 of 3 to 0.062 0 0 1 025: dt: 0.1250, sse=180802.4, rms=0.805 (0.162%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Writing output to ../surf/rh.white #ET# mris_place_surface 2.58 minutes #VMPC# mris_place_surfaces VmPeak 1880916 mris_place_surface done @#@FSTIME 2022:04:18:06:15:59 mris_place_surface N 25 e 164.82 S 2.52 U 162.25 P 99% M 1601296 F 0 R 697195 W 0 c 168 w 176 I 0 O 7608 L 21.46 22.09 22.44 @#@FSLOADPOST 2022:04:18:06:18:44 mris_place_surface N 25 21.32 21.78 22.26 #-------------------------------------------- #@# T1PialSurf lh Mon Apr 18 06:18:44 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --lh --i ../surf/lh.white --o ../surf/lh.pial.T1 --pial --nsmooth 0 --rip-label ../label/lh.cortex+hipamyg.label --pin-medial-wall ../label/lh.cortex.label --aparc ../label/lh.aparc.annot --repulse-surf ../surf/lh.white --white-surf ../surf/lh.white Reading in input surface ../surf/lh.white Not smoothing input surface Area 218154 0.34121 0.15316 0.000282 2.0135 Corner 654462 60.00000 17.42270 0.162783 179.3080 Edge 327231 0.90346 0.24818 0.012300 3.2709 Hinge 327231 10.77656 13.84596 0.000037 179.9621 Reading white surface coordinates from ../surf/lh.white Reading repulsion surface coordinates from ../surf/lh.white Reading in aparc ../label/lh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 71.5262 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/lh.cortex+hipamyg.label INFO: rip surface needed but not specified, so using input surface Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRIcopyHeader(): source has ctab MRISripSegs(): -2 2 0.5 ripped 0 vertex 54540: xyz = (-52.0945,1.68542,-37.4533) oxyz = (-52.0945,1.68542,-37.4533) wxzy = (-52.0945,1.68542,-37.4533) pxyz = (-52.0945,1.68542,-37.4533) CBVO Creating mask 109079 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=2 had to be increased for 402 vertices, nripped=5079 mean border=60.0, 208 (208) missing vertices, mean dist 1.6 [2.7 (%0.0)->3.3 (%100.0))] %12 local maxima, %35 large gradients and %48 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1497 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 000: dt: 0.0000, sse=16263997.0, rms=27.851 001: dt: 0.5000, sse=10419325.0, rms=22.228 (20.189%) 002: dt: 0.5000, sse=6876456.5, rms=17.982 (19.103%) 003: dt: 0.5000, sse=4915641.0, rms=15.126 (15.884%) 004: dt: 0.5000, sse=3820517.2, rms=13.263 (12.312%) 005: dt: 0.5000, sse=3134806.5, rms=11.948 (9.915%) 006: dt: 0.5000, sse=2644934.5, rms=10.910 (8.687%) 007: dt: 0.5000, sse=2269224.8, rms=10.040 (7.976%) 008: dt: 0.5000, sse=1979068.5, rms=9.311 (7.265%) 009: dt: 0.5000, sse=1758217.0, rms=8.713 (6.422%) 010: dt: 0.5000, sse=1575807.5, rms=8.184 (6.063%) 011: dt: 0.5000, sse=1422118.1, rms=7.710 (5.794%) 012: dt: 0.5000, sse=1280085.6, rms=7.244 (6.045%) 013: dt: 0.5000, sse=1151889.4, rms=6.796 (6.188%) 014: dt: 0.5000, sse=1038038.6, rms=6.371 (6.250%) 015: dt: 0.5000, sse=936961.2, rms=5.968 (6.322%) 016: dt: 0.5000, sse=855387.2, rms=5.622 (5.805%) 017: dt: 0.5000, sse=796483.8, rms=5.356 (4.733%) 018: dt: 0.5000, sse=749585.6, rms=5.134 (4.144%) 019: dt: 0.5000, sse=718333.1, rms=4.979 (3.021%) 020: dt: 0.5000, sse=693675.6, rms=4.853 (2.536%) 021: dt: 0.5000, sse=680064.4, rms=4.779 (1.507%) 022: dt: 0.5000, sse=666542.9, rms=4.706 (1.533%) rms = 4.6736/4.7061, sse=660992.2/666542.9, time step reduction 1 of 3 to 0.250 0 0 1 023: dt: 0.5000, sse=660992.2, rms=4.674 (0.692%) 024: dt: 0.2500, sse=583539.6, rms=4.238 (9.316%) 025: dt: 0.2500, sse=562910.7, rms=4.116 (2.891%) rms = 4.1072/4.1156, sse=561827.6/562910.7, time step reduction 2 of 3 to 0.125 0 0 1 026: dt: 0.2500, sse=561827.6, rms=4.107 (0.206%) 027: dt: 0.1250, sse=545844.4, rms=4.008 (2.404%) rms = 3.9869/4.0084, sse=542471.3/545844.5, time step reduction 3 of 3 to 0.062 0 0 1 028: dt: 0.1250, sse=542471.4, rms=3.987 (0.536%) maximum number of reductions reached, breaking from loop positioning took 2.1 minutes Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=1 had to be increased for 13025 vertices, nripped=5079 mean border=58.4, 2263 (31) missing vertices, mean dist 0.2 [0.2 (%24.6)->0.6 (%75.4))] %27 local maxima, %24 large gradients and %42 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0408 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=795444.6, rms=4.902 rms = 4.8956/4.9020, sse=793216.1/795444.5, time step reduction 1 of 3 to 0.250 0 0 1 029: dt: 0.5000, sse=793216.1, rms=4.896 (0.130%) 030: dt: 0.2500, sse=692311.4, rms=4.368 (10.767%) 031: dt: 0.2500, sse=672974.7, rms=4.260 (2.482%) rms = 4.2439/4.2600, sse=670098.7/672974.7, time step reduction 2 of 3 to 0.125 0 0 1 032: dt: 0.2500, sse=670098.7, rms=4.244 (0.379%) 033: dt: 0.1250, sse=643815.9, rms=4.088 (3.673%) rms = 4.0497/4.0880, sse=637421.2/643815.9, time step reduction 3 of 3 to 0.062 0 0 1 034: dt: 0.1250, sse=637421.2, rms=4.050 (0.936%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 13950 vertices, nripped=5079 mean border=57.9, 2845 (22) missing vertices, mean dist 0.1 [0.2 (%26.7)->0.4 (%73.3))] %33 local maxima, %18 large gradients and %42 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0220 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=666002.7, rms=4.181 rms = 4.5894/4.1813, sse=738202.6/666002.7, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 035: dt: 0.2500, sse=647004.3, rms=4.070 (2.667%) rms = 4.0516/4.0698, sse=643329.9/647004.3, time step reduction 2 of 3 to 0.125 0 0 1 036: dt: 0.2500, sse=643329.9, rms=4.052 (0.446%) 037: dt: 0.1250, sse=632144.8, rms=3.983 (1.697%) rms = 3.9449/3.9829, sse=625668.1/632144.8, time step reduction 3 of 3 to 0.062 0 0 1 038: dt: 0.1250, sse=625668.1, rms=3.945 (0.954%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=109079 Gdiag_no=-1 vno start=0, stop=109079 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 8790 vertices, nripped=5079 mean border=57.3, 8761 (18) missing vertices, mean dist 0.1 [0.2 (%30.0)->0.3 (%70.0))] %34 local maxima, %16 large gradients and %38 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0132 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=637489.1, rms=4.007 rms = 4.2648/4.0073, sse=677623.7/637489.0, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 039: dt: 0.2500, sse=623425.1, rms=3.923 (2.094%) 040: dt: 0.2500, sse=612438.0, rms=3.866 (1.468%) rms = 3.8621/3.8658, sse=610647.7/612438.0, time step reduction 2 of 3 to 0.125 0 0 1 041: dt: 0.2500, sse=610647.7, rms=3.862 (0.096%) 042: dt: 0.1250, sse=584460.9, rms=3.694 (4.341%) rms = 3.6510/3.6944, sse=577428.8/584460.9, time step reduction 3 of 3 to 0.062 0 0 1 043: dt: 0.1250, sse=577428.8, rms=3.651 (1.174%) maximum number of reductions reached, breaking from loop positioning took 0.4 minutes Pinning medial wall to white surface removing intersecting faces 000: 45 intersecting 001: 2 intersecting terminating search with 0 intersecting Writing output to ../surf/lh.pial.T1 #ET# mris_place_surface 3.66 minutes #VMPC# mris_place_surfaces VmPeak 1402712 mris_place_surface done @#@FSTIME 2022:04:18:06:18:44 mris_place_surface N 28 e 230.12 S 1.58 U 228.49 P 99% M 1122272 F 0 R 471687 W 0 c 291 w 181 I 0 O 7672 L 21.32 21.78 22.26 @#@FSLOADPOST 2022:04:18:06:22:34 mris_place_surface N 28 21.05 21.39 21.99 #-------------------------------------------- #@# T1PialSurf rh Mon Apr 18 06:22:34 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white 7.2.0 7.2.0 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn mris_place_surface --adgws-in ../surf/autodet.gw.stats.rh.dat --seg aseg.presurf.mgz --threads 1 --wm wm.mgz --invol brain.finalsurfs.mgz --rh --i ../surf/rh.white --o ../surf/rh.pial.T1 --pial --nsmooth 0 --rip-label ../label/rh.cortex+hipamyg.label --pin-medial-wall ../label/rh.cortex.label --aparc ../label/rh.aparc.annot --repulse-surf ../surf/rh.white --white-surf ../surf/rh.white Reading in input surface ../surf/rh.white Not smoothing input surface Area 216316 0.34083 0.14903 0.000506 2.2012 Corner 648948 60.00000 17.24161 0.201824 178.9787 Edge 324474 0.90329 0.24409 0.012199 3.8292 Hinge 324474 10.88999 14.05007 0.000027 179.9796 Reading white surface coordinates from ../surf/rh.white Reading repulsion surface coordinates from ../surf/rh.white Reading in aparc ../label/rh.aparc.annot Reading in input volume brain.finalsurfs.mgz Reading in wm volume wm.mgz MRIclipBrightWM(): nthresh=22972, wmmin=5, clip=110 MRIfindBrightNonWM(): 1295 bright non-wm voxels segmented. Masking bright non-wm for pial surface mid_gray = 71.5262 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 MRImask(): AllowDiffGeom = 1 Reading in seg volume aseg.presurf.mgz Ripping frozen voxels Ripping vertices not in label ../label/rh.cortex+hipamyg.label INFO: rip surface needed but not specified, so using input surface Ripping WMSA Starting MRISripSegs() d = (-2 2 0.5) segnos: 247 MRIcopyHeader(): source has ctab MRISripSegs(): -2 2 0.5 ripped 0 vertex 54080: xyz = (47.2862,3.4899,5.3755) oxyz = (47.2862,3.4899,5.3755) wxzy = (47.2862,3.4899,5.3755) pxyz = (47.2862,3.4899,5.3755) CBVO Creating mask 108160 n_averages 16 Iteration 0 ========================================= n_averages=16, current_sigma=2 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 2; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=2 had to be increased for 446 vertices, nripped=4637 mean border=59.7, 187 (187) missing vertices, mean dist 1.7 [2.6 (%0.0)->3.3 (%100.0))] %13 local maxima, %36 large gradients and %46 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.1481 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=2.0, host=hoppe, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 100 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 000: dt: 0.0000, sse=16684886.0, rms=28.276 001: dt: 0.5000, sse=10719260.0, rms=22.602 (20.066%) 002: dt: 0.5000, sse=7091211.5, rms=18.309 (18.992%) 003: dt: 0.5000, sse=5079707.5, rms=15.421 (15.776%) 004: dt: 0.5000, sse=3958164.0, rms=13.543 (12.176%) 005: dt: 0.5000, sse=3270771.2, rms=12.249 (9.557%) 006: dt: 0.5000, sse=2789248.5, rms=11.252 (8.137%) 007: dt: 0.5000, sse=2424694.2, rms=10.433 (7.283%) 008: dt: 0.5000, sse=2135337.5, rms=9.732 (6.721%) 009: dt: 0.5000, sse=1900144.4, rms=9.121 (6.279%) 010: dt: 0.5000, sse=1706423.8, rms=8.583 (5.893%) 011: dt: 0.5000, sse=1538808.6, rms=8.088 (5.764%) 012: dt: 0.5000, sse=1387273.6, rms=7.613 (5.877%) 013: dt: 0.5000, sse=1250074.0, rms=7.155 (6.013%) 014: dt: 0.5000, sse=1128620.6, rms=6.724 (6.026%) 015: dt: 0.5000, sse=1020330.8, rms=6.315 (6.085%) 016: dt: 0.5000, sse=932622.3, rms=5.962 (5.587%) 017: dt: 0.5000, sse=862734.6, rms=5.664 (4.997%) 018: dt: 0.5000, sse=811759.9, rms=5.435 (4.039%) 019: dt: 0.5000, sse=771425.1, rms=5.247 (3.465%) 020: dt: 0.5000, sse=741520.0, rms=5.102 (2.771%) 021: dt: 0.5000, sse=720708.0, rms=4.997 (2.044%) 022: dt: 0.5000, sse=705587.2, rms=4.919 (1.564%) 023: dt: 0.5000, sse=694056.9, rms=4.858 (1.241%) 024: dt: 0.5000, sse=684050.1, rms=4.804 (1.119%) rms = 4.7710/4.8038, sse=678307.5/684050.1, time step reduction 1 of 3 to 0.250 0 0 1 025: dt: 0.5000, sse=678307.5, rms=4.771 (0.683%) 026: dt: 0.2500, sse=586859.3, rms=4.264 (10.624%) 027: dt: 0.2500, sse=561793.2, rms=4.117 (3.460%) rms = 4.0984/4.1166, sse=559134.4/561793.2, time step reduction 2 of 3 to 0.125 0 0 1 028: dt: 0.2500, sse=559134.4, rms=4.098 (0.440%) 029: dt: 0.1250, sse=539784.1, rms=3.979 (2.921%) rms = 3.9539/3.9787, sse=535913.4/539784.2, time step reduction 3 of 3 to 0.062 0 0 1 030: dt: 0.1250, sse=535913.4, rms=3.954 (0.624%) maximum number of reductions reached, breaking from loop positioning took 2.2 minutes Iteration 1 ========================================= n_averages=8, current_sigma=1 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 1; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=1 had to be increased for 11991 vertices, nripped=4637 mean border=58.1, 2331 (19) missing vertices, mean dist 0.2 [0.2 (%24.1)->0.5 (%75.9))] %28 local maxima, %25 large gradients and %40 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0384 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=1.0, host=hoppe, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=785777.8, rms=4.842 rms = 4.9449/4.8420, sse=805602.3/785777.8, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 031: dt: 0.2500, sse=726163.6, rms=4.532 (6.396%) 032: dt: 0.2500, sse=687470.8, rms=4.320 (4.690%) 033: dt: 0.2500, sse=677894.0, rms=4.269 (1.180%) 034: dt: 0.2500, sse=667888.6, rms=4.213 (1.306%) rms = 4.1827/4.2130, sse=662513.7/667888.6, time step reduction 2 of 3 to 0.125 0 0 1 035: dt: 0.2500, sse=662513.7, rms=4.183 (0.718%) 036: dt: 0.1250, sse=633396.8, rms=4.007 (4.209%) rms = 3.9618/4.0067, sse=626049.7/633396.8, time step reduction 3 of 3 to 0.062 0 0 1 037: dt: 0.1250, sse=626049.6, rms=3.962 (1.121%) maximum number of reductions reached, breaking from loop positioning took 0.6 minutes Iteration 2 ========================================= n_averages=4, current_sigma=0.5 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 0.5; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.5 had to be increased for 12651 vertices, nripped=4637 mean border=57.5, 2993 (15) missing vertices, mean dist 0.1 [0.2 (%26.8)->0.4 (%73.2))] %34 local maxima, %19 large gradients and %40 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0218 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.5, host=hoppe, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=651859.6, rms=4.088 rms = 4.6151/4.0876, sse=744295.0/651859.6, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 038: dt: 0.2500, sse=631863.6, rms=3.967 (2.949%) rms = 3.9579/3.9670, sse=629564.2/631863.6, time step reduction 2 of 3 to 0.125 0 0 1 039: dt: 0.2500, sse=629564.2, rms=3.958 (0.230%) 040: dt: 0.1250, sse=617001.1, rms=3.879 (2.000%) rms = 3.8459/3.8787, sse=611490.1/617001.1, time step reduction 3 of 3 to 0.062 0 0 1 041: dt: 0.1250, sse=611490.1, rms=3.846 (0.848%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Iteration 3 ========================================= n_averages=2, current_sigma=0.25 Computing target border values Entering MRIScomputeBorderValues_new(): inside_hi = 100.1246030; border_hi = 60.9759330; border_low = 42.9277950; outside_low = 10.0000000; outside_hi = 56.4638980; sigma = 0.25; max_thickness = 10; step_size=0.399998; STEP_SIZE=0.1; which = 2 thresh = 0 flags = 0 CBVfindFirstPeakD1=0 CBVfindFirstPeakD2=0 nvertices=108160 Gdiag_no=-1 vno start=0, stop=108160 Replacing 255s with 0s #SI# sigma=0.25 had to be increased for 8112 vertices, nripped=4637 mean border=56.9, 8350 (11) missing vertices, mean dist 0.1 [0.2 (%30.2)->0.3 (%69.8))] %35 local maxima, %16 large gradients and %37 min vals, 0 gradients ignored nFirstPeakD1 0 MRIScomputeBorderValues_new() finished in 0.0130 min Averaging target values for 5 iterations... Positioning Surface: tspring = 0.3, nspring = 0.3, spring = 0, niters = 100 l_repulse = 0, l_surf_repulse = 5, checktol = 0 Positioning pial surface Entering MRISpositionSurface() max_mm = 0.3 MAX_REDUCTIONS = 2, REDUCTION_PCT = 0.5 parms->check_tol = 0, niterations = 100 tol=1.0e-04, sigma=0.2, host=hoppe, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=0.300, l_nspring=0.300, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 000: dt: 0.0000, sse=626088.1, rms=3.928 rms = 4.2576/3.9280, sse=677523.0/626088.1, time step reduction 1 of 3 to 0.250 0 1 1 RMS increased, rejecting step 042: dt: 0.2500, sse=613261.6, rms=3.850 (1.984%) rms = 3.8041/3.8500, sse=604227.5/613261.6, time step reduction 2 of 3 to 0.125 0 0 1 043: dt: 0.2500, sse=604227.4, rms=3.804 (1.193%) 044: dt: 0.1250, sse=590406.9, rms=3.715 (2.352%) rms = 3.6694/3.7146, sse=582973.5/590406.9, time step reduction 3 of 3 to 0.062 0 0 1 045: dt: 0.1250, sse=582973.4, rms=3.669 (1.218%) maximum number of reductions reached, breaking from loop positioning took 0.3 minutes Pinning medial wall to white surface removing intersecting faces 000: 27 intersecting 001: 5 intersecting terminating search with 0 intersecting Writing output to ../surf/rh.pial.T1 #ET# mris_place_surface 3.79 minutes #VMPC# mris_place_surfaces VmPeak 1409820 mris_place_surface done @#@FSTIME 2022:04:18:06:22:34 mris_place_surface N 28 e 237.88 S 2.12 U 235.71 P 99% M 1129404 F 0 R 340511 W 0 c 267 w 259 I 0 O 7608 L 21.05 21.39 21.99 @#@FSLOADPOST 2022:04:18:06:26:32 mris_place_surface N 28 20.95 21.21 21.78 #@# white curv lh Mon Apr 18 06:26:32 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --curv-map ../surf/lh.white 2 10 ../surf/lh.curv insurf ../surf/lh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv @#@FSTIME 2022:04:18:06:26:32 mris_place_surface N 5 e 1.57 S 0.10 U 1.46 P 99% M 151540 F 0 R 40542 W 0 c 4 w 64 I 0 O 856 L 20.95 21.21 21.78 @#@FSLOADPOST 2022:04:18:06:26:34 mris_place_surface N 5 20.95 21.21 21.77 #@# white area lh Mon Apr 18 06:26:34 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --area-map ../surf/lh.white ../surf/lh.area writing curvature file ../surf/lh.area @#@FSTIME 2022:04:18:06:26:34 mris_place_surface N 3 e 0.80 S 0.05 U 0.73 P 99% M 151556 F 0 R 40543 W 0 c 4 w 62 I 0 O 856 L 20.95 21.21 21.77 @#@FSLOADPOST 2022:04:18:06:26:35 mris_place_surface N 3 20.95 21.21 21.77 #@# pial curv lh Mon Apr 18 06:26:35 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --curv-map ../surf/lh.pial 2 10 ../surf/lh.curv.pial insurf ../surf/lh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/lh.curv.pial @#@FSTIME 2022:04:18:06:26:35 mris_place_surface N 5 e 1.57 S 0.08 U 1.48 P 99% M 151516 F 0 R 40542 W 0 c 4 w 65 I 0 O 856 L 20.95 21.21 21.77 @#@FSLOADPOST 2022:04:18:06:26:36 mris_place_surface N 5 20.95 21.21 21.77 #@# pial area lh Mon Apr 18 06:26:36 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --area-map ../surf/lh.pial ../surf/lh.area.pial writing curvature file ../surf/lh.area.pial @#@FSTIME 2022:04:18:06:26:36 mris_place_surface N 3 e 0.76 S 0.10 U 0.65 P 99% M 151788 F 0 R 40548 W 0 c 2 w 61 I 0 O 856 L 20.95 21.21 21.77 @#@FSLOADPOST 2022:04:18:06:26:37 mris_place_surface N 3 20.95 21.21 21.77 #@# thickness lh Mon Apr 18 06:26:37 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness 0 of 109079 vertices processed 25000 of 109079 vertices processed 50000 of 109079 vertices processed 75000 of 109079 vertices processed 100000 of 109079 vertices processed 0 of 109079 vertices processed 25000 of 109079 vertices processed 50000 of 109079 vertices processed 75000 of 109079 vertices processed 100000 of 109079 vertices processed thickness calculation complete, 1103:6381 truncations. 35136 vertices at 0 distance 68334 vertices at 1 distance 63160 vertices at 2 distance 30181 vertices at 3 distance 11835 vertices at 4 distance 4732 vertices at 5 distance 1991 vertices at 6 distance 888 vertices at 7 distance 443 vertices at 8 distance 295 vertices at 9 distance 223 vertices at 10 distance 162 vertices at 11 distance 133 vertices at 12 distance 142 vertices at 13 distance 114 vertices at 14 distance 95 vertices at 15 distance 74 vertices at 16 distance 64 vertices at 17 distance 50 vertices at 18 distance 40 vertices at 19 distance 66 vertices at 20 distance writing curvature file ../surf/lh.thickness @#@FSTIME 2022:04:18:06:26:37 mris_place_surface N 6 e 27.63 S 0.07 U 27.55 P 99% M 151672 F 0 R 46214 W 0 c 13 w 65 I 0 O 856 L 20.95 21.21 21.77 @#@FSLOADPOST 2022:04:18:06:27:05 mris_place_surface N 6 20.64 21.10 21.72 #@# area and vertex vol lh Mon Apr 18 06:27:05 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --thickness ../surf/lh.white ../surf/lh.pial 20 5 ../surf/lh.thickness /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume MOD1707_Y2_a_fs7p2 lh /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.volume masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Total face volume 258765 Total vertex volume 258574 (mask=0) #@# MOD1707_Y2_a_fs7p2 lh 258574 vertexvol Done @#@FSTIME 2022:04:18:06:27:05 vertexvol N 4 e 1.59 S 0.13 U 1.42 P 97% M 251528 F 0 R 71206 W 0 c 4 w 283 I 0 O 2568 L 20.64 21.10 21.72 @#@FSLOADPOST 2022:04:18:06:27:07 vertexvol N 4 20.64 21.10 21.72 #@# white curv rh Mon Apr 18 06:27:07 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --curv-map ../surf/rh.white 2 10 ../surf/rh.curv insurf ../surf/rh.white, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv @#@FSTIME 2022:04:18:06:27:07 mris_place_surface N 5 e 1.59 S 0.08 U 1.50 P 99% M 150136 F 0 R 40198 W 0 c 2 w 60 I 0 O 848 L 20.64 21.10 21.72 @#@FSLOADPOST 2022:04:18:06:27:08 mris_place_surface N 5 20.64 21.10 21.72 #@# white area rh Mon Apr 18 06:27:08 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --area-map ../surf/rh.white ../surf/rh.area writing curvature file ../surf/rh.area @#@FSTIME 2022:04:18:06:27:08 mris_place_surface N 3 e 0.79 S 0.06 U 0.72 P 99% M 150260 F 0 R 40199 W 0 c 2 w 60 I 0 O 848 L 20.64 21.10 21.72 @#@FSLOADPOST 2022:04:18:06:27:09 mris_place_surface N 3 20.59 21.09 21.71 #@# pial curv rh Mon Apr 18 06:27:09 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --curv-map ../surf/rh.pial 2 10 ../surf/rh.curv.pial insurf ../surf/rh.pial, nbrs 2, curvature_avgs 10 writing curvature file ../surf/rh.curv.pial @#@FSTIME 2022:04:18:06:27:09 mris_place_surface N 5 e 1.57 S 0.08 U 1.47 P 99% M 150312 F 0 R 40201 W 0 c 3 w 62 I 0 O 848 L 20.59 21.09 21.71 @#@FSLOADPOST 2022:04:18:06:27:11 mris_place_surface N 5 20.59 21.09 21.71 #@# pial area rh Mon Apr 18 06:27:11 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --area-map ../surf/rh.pial ../surf/rh.area.pial writing curvature file ../surf/rh.area.pial @#@FSTIME 2022:04:18:06:27:11 mris_place_surface N 3 e 0.78 S 0.09 U 0.68 P 99% M 150256 F 0 R 40201 W 0 c 2 w 60 I 0 O 848 L 20.59 21.09 21.71 @#@FSLOADPOST 2022:04:18:06:27:12 mris_place_surface N 3 20.59 21.09 21.71 #@# thickness rh Mon Apr 18 06:27:12 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness 0 of 108160 vertices processed 25000 of 108160 vertices processed 50000 of 108160 vertices processed 75000 of 108160 vertices processed 100000 of 108160 vertices processed 0 of 108160 vertices processed 25000 of 108160 vertices processed 50000 of 108160 vertices processed 75000 of 108160 vertices processed 100000 of 108160 vertices processed thickness calculation complete, 1060:6790 truncations. 34250 vertices at 0 distance 66759 vertices at 1 distance 62442 vertices at 2 distance 30481 vertices at 3 distance 12229 vertices at 4 distance 4905 vertices at 5 distance 2209 vertices at 6 distance 1025 vertices at 7 distance 543 vertices at 8 distance 338 vertices at 9 distance 217 vertices at 10 distance 171 vertices at 11 distance 123 vertices at 12 distance 110 vertices at 13 distance 121 vertices at 14 distance 98 vertices at 15 distance 80 vertices at 16 distance 68 vertices at 17 distance 52 vertices at 18 distance 38 vertices at 19 distance 61 vertices at 20 distance writing curvature file ../surf/rh.thickness @#@FSTIME 2022:04:18:06:27:12 mris_place_surface N 6 e 27.65 S 0.08 U 27.56 P 99% M 150280 F 0 R 45819 W 0 c 11 w 63 I 0 O 848 L 20.59 21.09 21.71 @#@FSLOADPOST 2022:04:18:06:27:40 mris_place_surface N 6 20.49 21.01 21.67 #@# area and vertex vol rh Mon Apr 18 06:27:40 CDT 2022 cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_place_surface --thickness ../surf/rh.white ../surf/rh.pial 20 5 ../surf/rh.thickness /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume MOD1707_Y2_a_fs7p2 rh /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.volume masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Total face volume 260952 Total vertex volume 260763 (mask=0) #@# MOD1707_Y2_a_fs7p2 rh 260763 vertexvol Done @#@FSTIME 2022:04:18:06:27:40 vertexvol N 4 e 1.60 S 0.17 U 1.39 P 97% M 249592 F 0 R 70621 W 0 c 5 w 275 I 0 O 2544 L 20.49 21.01 21.67 @#@FSLOADPOST 2022:04:18:06:27:41 vertexvol N 4 20.49 21.01 21.67 #----------------------------------------- #@# Curvature Stats lh Mon Apr 18 06:27:41 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm MOD1707_Y2_a_fs7p2 lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ MOD1707_Y2_a_fs7p2/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 222 ] Gb_filter = 0 WARN: S lookup min: -0.230327 WARN: S explicit min: 0.000000 vertex = 554 @#@FSTIME 2022:04:18:06:27:41 mris_curvature_stats N 11 e 2.25 S 0.09 U 2.11 P 97% M 151372 F 0 R 40661 W 0 c 4 w 428 I 0 O 6888 L 20.49 21.01 21.67 @#@FSLOADPOST 2022:04:18:06:27:44 mris_curvature_stats N 11 20.45 21.00 21.66 #----------------------------------------- #@# Curvature Stats rh Mon Apr 18 06:27:44 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm MOD1707_Y2_a_fs7p2 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ MOD1707_Y2_a_fs7p2/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vno faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 231 ] Gb_filter = 0 @#@FSTIME 2022:04:18:06:27:44 mris_curvature_stats N 11 e 2.19 S 0.09 U 2.05 P 97% M 150308 F 0 R 40316 W 0 c 4 w 436 I 0 O 6824 L 20.45 21.00 21.66 @#@FSLOADPOST 2022:04:18:06:27:46 mris_curvature_stats N 11 20.45 21.00 21.66 #-------------------------------------------- #@# Cortical ribbon mask Mon Apr 18 06:27:46 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon MOD1707_Y2_a_fs7p2 SUBJECTS_DIR is /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn loading input data... Running hemis serially Processing left hemi MRIcopyHeader(): source has ctab computing distance to left white surface MRIcopyHeader(): source has ctab computing distance to left pial surface Processing right hemi MRIcopyHeader(): source has ctab computing distance to right white surface MRIcopyHeader(): source has ctab computing distance to right pial surface hemi masks overlap voxels = 376 MRIcopyHeader(): source has ctab writing volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/ribbon.mgz mris_volmask took 10.95 minutes writing ribbon files MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab @#@FSTIME 2022:04:18:06:27:46 mris_volmask N 12 e 657.18 S 4.10 U 653.05 P 99% M 1175900 F 0 R 955549 W 0 c 346 w 60 I 0 O 1248 L 20.45 21.00 21.66 @#@FSLOADPOST 2022:04:18:06:38:43 mris_volmask N 12 18.36 19.01 20.33 #----------------------------------------- #@# Cortical Parc 2 lh Mon Apr 18 06:38:43 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 lh ../surf/lh.sphere.reg /usr/local/pkg/freesurfer7.2/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 3.0 using min determinant for regularization = 0.088 0 singular and 0 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 111 labels changed using aseg relabeling using gibbs priors... 000: 7738 changed, 109079 examined... 001: 1767 changed, 29753 examined... 002: 508 changed, 9322 examined... 003: 213 changed, 2991 examined... 004: 97 changed, 1256 examined... 005: 58 changed, 585 examined... 006: 39 changed, 317 examined... 007: 18 changed, 218 examined... 008: 15 changed, 117 examined... 009: 11 changed, 87 examined... 010: 9 changed, 59 examined... 011: 2 changed, 45 examined... 012: 0 changed, 14 examined... 55 labels changed using aseg 000: 201 total segments, 117 labels (1775 vertices) changed 001: 91 total segments, 8 labels (222 vertices) changed 002: 83 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 39 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1256 vertices marked for relabeling... 1256 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 13 seconds. @#@FSTIME 2022:04:18:06:38:43 mris_ca_label N 11 e 13.16 S 1.07 U 12.06 P 99% M 1489036 F 0 R 567303 W 0 c 16 w 129 I 0 O 1712 L 18.36 19.01 20.33 @#@FSLOADPOST 2022:04:18:06:38:56 mris_ca_label N 11 18.06 18.91 20.28 #----------------------------------------- #@# Cortical Parc 2 rh Mon Apr 18 06:38:56 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 rh ../surf/rh.sphere.reg /usr/local/pkg/freesurfer7.2/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.021 0 singular and 0 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1 labels changed using aseg relabeling using gibbs priors... 000: 7682 changed, 108160 examined... 001: 1767 changed, 29897 examined... 002: 482 changed, 9383 examined... 003: 193 changed, 2724 examined... 004: 91 changed, 1137 examined... 005: 38 changed, 507 examined... 006: 26 changed, 226 examined... 007: 17 changed, 150 examined... 008: 9 changed, 99 examined... 009: 2 changed, 52 examined... 010: 0 changed, 12 examined... 0 labels changed using aseg 000: 203 total segments, 122 labels (1339 vertices) changed 001: 84 total segments, 3 labels (13 vertices) changed 002: 81 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 35 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1455 vertices marked for relabeling... 1455 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 14 seconds. @#@FSTIME 2022:04:18:06:38:56 mris_ca_label N 11 e 13.62 S 1.34 U 12.26 P 99% M 1490376 F 0 R 652461 W 0 c 24 w 62 I 0 O 1704 L 18.06 18.91 20.28 @#@FSLOADPOST 2022:04:18:06:39:10 mris_ca_label N 11 17.83 18.82 20.22 #----------------------------------------- #@# Cortical Parc 3 lh Mon Apr 18 06:39:10 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 lh ../surf/lh.sphere.reg /usr/local/pkg/freesurfer7.2/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 383 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1088 labels changed using aseg relabeling using gibbs priors... 000: 1623 changed, 109079 examined... 001: 326 changed, 7638 examined... 002: 93 changed, 1916 examined... 003: 40 changed, 546 examined... 004: 20 changed, 233 examined... 005: 12 changed, 127 examined... 006: 7 changed, 72 examined... 007: 7 changed, 46 examined... 008: 5 changed, 45 examined... 009: 4 changed, 30 examined... 010: 2 changed, 25 examined... 011: 0 changed, 13 examined... 162 labels changed using aseg 000: 46 total segments, 13 labels (145 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 8 filter iterations complete (10 requested, 0 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 913 vertices marked for relabeling... 913 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2022:04:18:06:39:10 mris_ca_label N 11 e 10.27 S 0.62 U 9.64 P 99% M 888352 F 0 R 314527 W 0 c 11 w 126 I 0 O 1712 L 17.83 18.82 20.22 @#@FSLOADPOST 2022:04:18:06:39:20 mris_ca_label N 11 17.70 18.76 20.19 #----------------------------------------- #@# Cortical Parc 3 rh Mon Apr 18 06:39:20 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 MOD1707_Y2_a_fs7p2 rh ../surf/rh.sphere.reg /usr/local/pkg/freesurfer7.2/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline 7.2.0 7.2.0 reading atlas from /usr/local/pkg/freesurfer7.2/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... MRIcopyHeader(): source has ctab 1066 labels changed using aseg relabeling using gibbs priors... 000: 1715 changed, 108160 examined... 001: 357 changed, 8047 examined... 002: 85 changed, 2066 examined... 003: 37 changed, 542 examined... 004: 16 changed, 223 examined... 005: 9 changed, 79 examined... 006: 6 changed, 50 examined... 007: 3 changed, 36 examined... 008: 3 changed, 18 examined... 009: 7 changed, 17 examined... 010: 5 changed, 30 examined... 011: 3 changed, 23 examined... 012: 3 changed, 14 examined... 013: 2 changed, 17 examined... 014: 4 changed, 15 examined... 015: 3 changed, 16 examined... 016: 3 changed, 12 examined... 017: 7 changed, 17 examined... 018: 4 changed, 24 examined... 019: 3 changed, 20 examined... 020: 3 changed, 17 examined... 021: 3 changed, 16 examined... 022: 1 changed, 14 examined... 023: 1 changed, 7 examined... 024: 0 changed, 8 examined... 136 labels changed using aseg 000: 55 total segments, 22 labels (201 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 2 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1175 vertices marked for relabeling... 1175 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 10 seconds. @#@FSTIME 2022:04:18:06:39:20 mris_ca_label N 11 e 10.17 S 0.58 U 9.58 P 99% M 919916 F 0 R 285991 W 0 c 12 w 129 I 0 O 1696 L 17.70 18.76 20.19 @#@FSLOADPOST 2022:04:18:06:39:31 mris_ca_label N 11 17.59 18.70 20.15 #----------------------------------------- #@# WM/GM Contrast lh Mon Apr 18 06:39:31 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts pctsurfcon --s MOD1707_Y2_a_fs7p2 --lh-only Log file is /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts/pctsurfcon.log Mon Apr 18 06:39:31 CDT 2022 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts /usr/local/pkg/freesurfer7.2/bin/pctsurfcon pctsurfcon 7.2.0 Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/pkg/freesurfer7.2 mri_vol2surf --mov /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.wm.mgh --regheader MOD1707_Y2_a_fs7p2 --cortex srcvol = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00002; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Reading surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 79620 Masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.wm.mgh Dim: 109079 1 1 mri_vol2surf --mov /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.gm.mgh --projfrac 0.3 --regheader MOD1707_Y2_a_fs7p2 --cortex srcvol = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00002; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Reading surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Done reading source surface Reading thickness /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 89832 Masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.gm.mgh Dim: 109079 1 1 mri_concat /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.wm.mgh /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.25998/lh.gm.mgh --paired-diff-norm --mul 100 --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.w-g.pct.mgh mri_segstats --in /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.w-g.pct.mgh --annot MOD1707_Y2_a_fs7p2 lh aparc --sum /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/stats/lh.w-g.pct.stats --snr 7.2.0 cwd cmdline mri_segstats --in /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.w-g.pct.mgh --annot MOD1707_Y2_a_fs7p2 lh aparc --sum /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/stats/lh.w-g.pct.stats --snr sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.annot Seg base 1000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.w-g.pct.mgh Vertex Area is 0.682406 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2022:04:18:06:39:31 pctsurfcon N 3 e 4.10 S 0.44 U 3.57 P 97% M 289584 F 0 R 195044 W 0 c 20 w 395 I 0 O 2744 L 17.59 18.70 20.15 @#@FSLOADPOST 2022:04:18:06:39:35 pctsurfcon N 3 17.54 18.67 20.14 #----------------------------------------- #@# WM/GM Contrast rh Mon Apr 18 06:39:35 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts pctsurfcon --s MOD1707_Y2_a_fs7p2 --rh-only Log file is /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts/pctsurfcon.log Mon Apr 18 06:39:35 CDT 2022 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn cd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts /usr/local/pkg/freesurfer7.2/bin/pctsurfcon pctsurfcon 7.2.0 Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/pkg/freesurfer7.2 mri_vol2surf --mov /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.wm.mgh --regheader MOD1707_Y2_a_fs7p2 --cortex srcvol = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00002; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Reading surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 78798 Masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.wm.mgh Dim: 108160 1 1 mri_vol2surf --mov /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.gm.mgh --projfrac 0.3 --regheader MOD1707_Y2_a_fs7p2 --cortex srcvol = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 0.00002; 0.00000 0.00000 1.00000 0.00000; 0.00000 -1.00000 0.00000 -0.00002; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Reading surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Done reading source surface Reading thickness /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 89300 Masking with /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.gm.mgh Dim: 108160 1 1 mri_concat /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.wm.mgh /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp.pctsurfcon.26139/rh.gm.mgh --paired-diff-norm --mul 100 --o /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.w-g.pct.mgh mri_segstats --in /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.w-g.pct.mgh --annot MOD1707_Y2_a_fs7p2 rh aparc --sum /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/stats/rh.w-g.pct.stats --snr 7.2.0 cwd cmdline mri_segstats --in /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.w-g.pct.mgh --annot MOD1707_Y2_a_fs7p2 rh aparc --sum /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/stats/rh.w-g.pct.stats --snr sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 Constructing seg from annotation Reading annotation /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.annot Seg base 2000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.w-g.pct.mgh Vertex Area is 0.681648 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up @#@FSTIME 2022:04:18:06:39:35 pctsurfcon N 3 e 4.06 S 0.44 U 3.52 P 97% M 288512 F 0 R 194221 W 0 c 10 w 394 I 0 O 2736 L 17.54 18.67 20.14 @#@FSLOADPOST 2022:04:18:06:39:39 pctsurfcon N 3 17.54 18.67 20.14 #----------------------------------------- #@# Relabel Hypointensities Mon Apr 18 06:39:39 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz reading input surface ../surf/lh.white... relabeling lh hypointensities... MRIcopyHeader(): source has ctab 3767 voxels changed to hypointensity... reading input surface ../surf/rh.white... relabeling rh hypointensities... MRIcopyHeader(): source has ctab 3398 voxels changed to hypointensity... MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab 6993 hypointense voxels neighboring cortex changed @#@FSTIME 2022:04:18:06:39:39 mri_relabel_hypointensities N 3 e 29.64 S 1.04 U 28.59 P 99% M 731496 F 0 R 558497 W 0 c 42 w 56 I 0 O 920 L 17.58 18.66 20.12 @#@FSLOADPOST 2022:04:18:06:40:09 mri_relabel_hypointensities N 3 17.45 18.54 20.05 #----------------------------------------- #@# APas-to-ASeg Mon Apr 18 06:40:09 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_surf2volseg --o aseg.mgz --i aseg.presurf.hypos.mgz --fix-presurf-with-ribbon /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/ribbon.mgz --threads 1 --lh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label --lh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white --lh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial --rh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label --rh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white --rh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn outvol aseg.mgz 72 avail.processors, using 1 Loading aseg.presurf.hypos.mgz MRIcopyHeader(): source has ctab Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/ribbon.mgz Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 nrelabeled = 230224 ndotcheck = 0 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 969468 mri_surf2volseg done @#@FSTIME 2022:04:18:06:40:09 mri_surf2volseg N 20 e 16.30 S 0.58 U 15.66 P 99% M 919932 F 0 R 247669 W 0 c 17 w 107 I 0 O 1032 L 17.45 18.54 20.05 @#@FSLOADPOST 2022:04:18:06:40:25 mri_surf2volseg N 20 17.39 18.46 19.99 mri_brainvol_stats MOD1707_Y2_a_fs7p2 ComputeBrainVolumeStats2 VoxelVol=0.511992, KeepCSF=1 #CBVS2 MaskVol 1336817.1 #CBVS2 BrainSegVol 991702.0 #CBVS2 BrainSegVolNotVent 982845.1 #CBVS2 SupraTentVol 857832.9 #CBVS2 SupraTentVolNotVent 848976.0 #CBVS2 lhCtxGM 258609.9 #CBVS2 rhCtxGM 260501.1 #CBVS2 lhCerebralWM 141310.9 #CBVS2 rhCerebralWM 139868.6 #CBVS2 SubCortGMVol 49101.6 #CBVS2 CerebellumVol 133869.1 #CBVS2 CerebellumGMVol 113241.4 #CBVS2 VentChorVol 6317.5 #CBVS2 3rd4th5thCSF 2539.5 #CBVS2 AllCSF 8857.0 #CBVS2 CCVol 2167.8 @#@FSTIME 2022:04:18:06:40:25 mri_brainvol_stats N 1 e 6.63 S 0.24 U 6.38 P 99% M 256384 F 0 R 121348 W 0 c 10 w 46 I 0 O 8 L 17.39 18.46 19.99 @#@FSLOADPOST 2022:04:18:06:40:32 mri_brainvol_stats N 1 17.36 18.43 19.97 #----------------------------------------- #@# AParc-to-ASeg aparc Mon Apr 18 06:40:32 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_surf2volseg --o aparc+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.annot 1000 --lh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label --lh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white --lh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial --rh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.annot 2000 --rh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label --rh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white --rh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn outvol aparc+aseg.mgz 72 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 6696 vertices from lh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.annot Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 6508 vertices from rh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 nrelabeled = 1012947 ndotcheck = 79147 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 937560 mri_surf2volseg done @#@FSTIME 2022:04:18:06:40:32 mri_surf2volseg N 25 e 436.73 S 1.61 U 435.09 P 99% M 888396 F 0 R 456122 W 0 c 877 w 121 I 0 O 1192 L 17.36 18.43 19.97 @#@FSLOADPOST 2022:04:18:06:47:49 mri_surf2volseg N 25 15.48 16.76 18.63 #----------------------------------------- #@# AParc-to-ASeg aparc.a2009s Mon Apr 18 06:47:49 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_surf2volseg --o aparc.a2009s+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.a2009s.annot 11100 --lh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label --lh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white --lh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial --rh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.a2009s.annot 12100 --rh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label --rh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white --rh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn outvol aparc.a2009s+aseg.mgz 72 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 6696 vertices from lh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.a2009s.annot Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 6508 vertices from rh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.a2009s.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 nrelabeled = 1012947 ndotcheck = 79147 Starting Surf2VolSeg free free done #VMPC# mri_surf2volseg VmPeak 937636 mri_surf2volseg done @#@FSTIME 2022:04:18:06:47:49 mri_surf2volseg N 25 e 417.06 S 1.37 U 415.66 P 99% M 888460 F 0 R 424129 W 0 c 202 w 148 I 0 O 1296 L 15.48 16.76 18.63 @#@FSLOADPOST 2022:04:18:06:54:46 mri_surf2volseg N 25 11.29 13.19 16.33 #----------------------------------------- #@# AParc-to-ASeg aparc.DKTatlas Mon Apr 18 06:54:46 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri mri_surf2volseg --o aparc.DKTatlas+aseg.mgz --label-cortex --i aseg.mgz --threads 1 --lh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.DKTatlas.annot 1000 --lh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label --lh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white --lh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial --rh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.DKTatlas.annot 2000 --rh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label --rh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white --rh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn outvol aparc.DKTatlas+aseg.mgz 72 avail.processors, using 1 Loading aseg.mgz MRIcopyHeader(): source has ctab Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 6696 vertices from lh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.DKTatlas.annot Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 6508 vertices from rh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.DKTatlas.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 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/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.annot 3000 --lh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label --lh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white --lh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial --rh-annot /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.annot 4000 --rh-cortex-mask /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label --rh-white /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white --rh-pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn outvol wmparc.mgz 72 avail.processors, using 1 Loading aparc+aseg.mgz MRIcopyHeader(): source has ctab Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.cortex.label Ripping lh vertices labeled not in lh.cortex.label ripped 6696 vertices from lh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.aparc.annot Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.cortex.label Ripping rh vertices labeled not in rh.cortex.label ripped 6508 vertices from rh hemi Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.aparc.annot Done loading 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 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mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject MOD1707_Y2_a_fs7p2 --surf-wm-vol --ctab /usr/local/pkg/freesurfer7.2/WMParcStatsLUT.txt --etiv setting seed for random number genererator to 1234 7.2.0 cwd cmdline mri_segstats --seed 1234 --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject MOD1707_Y2_a_fs7p2 --surf-wm-vol --ctab /usr/local/pkg/freesurfer7.2/WMParcStatsLUT.txt --etiv sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) Loading mri/wmparc.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 0.511992 mm^3 Generating list of segmentation ids Found 390 segmentations Computing statistics for each segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Reporting on 70 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2022:04:18:07:02:39 mri_segstats N 24 e 525.27 S 1.35 U 523.88 P 99% M 459440 F 0 R 2369641 W 0 c 825 w 47 I 0 O 24 L 10.63 11.44 14.21 @#@FSLOADPOST 2022:04:18:07:11:25 mri_segstats N 24 8.28 9.48 12.09 #----------------------------------------- #@# Parcellation Stats lh Mon Apr 18 07:11:25 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab MOD1707_Y2_a_fs7p2 lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1490 927 2726 2.933 0.675 0.076 0.012 5 0.8 bankssts 625 394 1025 2.583 0.502 0.102 0.014 6 0.5 caudalanteriorcingulate 2184 1504 5141 2.747 0.661 0.117 0.028 33 2.1 caudalmiddlefrontal 1896 1345 3575 2.337 0.565 0.137 0.032 25 2.5 cuneus 435 276 1388 3.264 0.827 0.121 0.033 9 0.5 entorhinal 3287 2300 8878 2.990 0.707 0.125 0.032 59 4.3 fusiform 5305 3705 13950 2.912 0.683 0.114 0.026 75 5.1 inferiorparietal 3612 2495 9856 3.001 0.853 0.124 0.031 46 4.8 inferiortemporal 1359 856 2614 2.379 1.095 0.102 0.027 15 1.4 isthmuscingulate 6356 4463 12738 2.405 0.666 0.140 0.037 109 9.4 lateraloccipital 3254 2164 8322 3.104 0.785 0.113 0.025 42 3.5 lateralorbitofrontal 3742 2868 8601 2.503 0.699 0.150 0.040 63 7.1 lingual 2318 1616 6134 3.141 0.879 0.114 0.030 40 2.8 medialorbitofrontal 4045 2808 11910 2.977 0.890 0.132 0.035 69 6.0 middletemporal 867 525 1799 2.829 0.681 0.075 0.014 7 0.4 parahippocampal 1653 1092 3994 2.984 0.598 0.099 0.020 13 1.3 paracentral 1694 1146 4683 3.201 0.599 0.105 0.019 21 1.2 parsopercularis 856 612 3171 3.303 0.835 0.127 0.025 13 0.8 parsorbitalis 1651 1120 4487 2.949 0.748 0.110 0.022 19 1.6 parstriangularis 1951 1341 2519 2.115 0.528 0.129 0.034 23 2.7 pericalcarine 4585 3021 8931 2.440 0.696 0.109 0.021 55 4.0 postcentral 1318 863 2874 2.576 1.006 0.106 0.019 15 1.2 posteriorcingulate 4968 3369 11759 2.833 0.673 0.109 0.022 48 4.9 precentral 4732 3246 11836 3.191 0.762 0.115 0.024 50 4.8 precuneus 674 433 2107 3.492 0.971 0.087 0.019 5 0.6 rostralanteriorcingulate 7147 5167 20481 2.996 0.720 0.127 0.031 118 8.5 rostralmiddlefrontal 8571 6123 27313 3.418 0.759 0.124 0.029 120 9.9 superiorfrontal 6436 4494 15086 2.704 0.695 0.118 0.025 82 7.1 superiorparietal 5215 3463 13551 3.098 0.758 0.111 0.026 63 6.1 superiortemporal 5314 3548 13134 2.946 0.689 0.112 0.025 69 5.2 supramarginal 353 296 1879 4.170 0.494 0.189 0.053 10 0.7 frontalpole 604 437 2843 3.551 0.812 0.141 0.050 10 1.3 temporalpole 683 440 1533 3.097 0.625 0.117 0.019 8 0.5 transversetemporal 3203 2003 7735 3.356 1.075 0.089 0.024 17 2.9 insula @#@FSTIME 2022:04:18:07:11:25 mris_anatomical_stats N 14 e 10.98 S 0.44 U 10.50 P 99% M 405796 F 0 R 169556 W 0 c 16 w 138 I 0 O 296 L 8.28 9.48 12.09 @#@FSLOADPOST 2022:04:18:07:11:36 mris_anatomical_stats N 14 8.22 9.40 12.02 mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab MOD1707_Y2_a_fs7p2 lh pial computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1490 903 2726 2.933 0.675 0.121 0.037 35 1.9 bankssts 625 419 1025 2.583 0.502 0.129 0.041 30 1.2 caudalanteriorcingulate 2184 2114 5141 2.747 0.661 0.171 0.039 54 3.7 caudalmiddlefrontal 1896 1848 3575 2.337 0.565 0.165 0.045 53 3.3 cuneus 435 587 1388 3.264 0.827 0.323 0.095 16 2.3 entorhinal 3287 3533 8878 2.990 0.707 0.193 0.047 70 6.7 fusiform 5305 5511 13950 2.912 0.683 0.184 0.048 126 9.6 inferiorparietal 3612 3770 9856 3.001 0.853 0.200 0.055 154 8.1 inferiortemporal 1359 1266 2614 2.379 1.095 0.207 0.069 48 4.3 isthmuscingulate 6356 6180 12738 2.405 0.666 0.183 0.050 183 13.0 lateraloccipital 3254 3200 8322 3.104 0.785 0.180 0.051 108 6.4 lateralorbitofrontal 3742 4281 8601 2.503 0.699 0.222 0.057 135 9.9 lingual 2318 2475 6134 3.141 0.879 0.187 0.047 55 5.1 medialorbitofrontal 4045 5005 11910 2.977 0.890 0.213 0.053 122 9.7 middletemporal 867 802 1799 2.829 0.681 0.181 0.053 13 2.3 parahippocampal 1653 1533 3994 2.984 0.598 0.156 0.037 28 2.3 paracentral 1694 1690 4683 3.201 0.599 0.173 0.037 26 2.9 parsopercularis 856 1225 3171 3.303 0.835 0.220 0.041 14 1.4 parsorbitalis 1651 1809 4487 2.949 0.748 0.189 0.040 29 2.9 parstriangularis 1951 1115 2519 2.115 0.528 0.143 0.061 120 3.6 pericalcarine 4585 4280 8931 2.440 0.696 0.163 0.035 69 7.2 postcentral 1318 1193 2874 2.576 1.006 0.187 0.047 63 2.6 posteriorcingulate 4968 4625 11759 2.833 0.673 0.153 0.032 73 6.8 precentral 4732 4063 11836 3.191 0.762 0.165 0.043 154 8.2 precuneus 674 655 2107 3.492 0.971 0.210 0.060 30 1.6 rostralanteriorcingulate 7147 7852 20481 2.996 0.720 0.200 0.044 194 13.6 rostralmiddlefrontal 8571 9364 27313 3.418 0.759 0.196 0.048 277 17.1 superiorfrontal 6436 6536 15086 2.704 0.695 0.182 0.045 144 12.7 superiorparietal 5215 5176 13551 3.098 0.758 0.180 0.046 140 9.6 superiortemporal 5314 5178 13134 2.946 0.689 0.176 0.046 131 9.9 supramarginal 353 584 1879 4.170 0.494 0.270 0.048 23 0.7 frontalpole 604 1101 2843 3.551 0.812 0.266 0.049 12 1.3 temporalpole 683 579 1533 3.097 0.625 0.139 0.044 9 1.2 transversetemporal 3203 2296 7735 3.356 1.075 0.163 0.046 74 6.9 insula @#@FSTIME 2022:04:18:07:11:36 mris_anatomical_stats N 14 e 10.83 S 0.41 U 10.36 P 99% M 406168 F 0 R 153914 W 0 c 19 w 133 I 0 O 296 L 8.22 9.40 12.02 @#@FSLOADPOST 2022:04:18:07:11:47 mris_anatomical_stats N 14 8.18 9.36 11.98 #----------------------------------------- #@# Parcellation Stats rh Mon Apr 18 07:11:47 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab MOD1707_Y2_a_fs7p2 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1174 751 2194 3.046 0.593 0.087 0.017 5 0.9 bankssts 999 670 2581 3.159 0.826 0.121 0.021 16 1.0 caudalanteriorcingulate 2450 1692 6772 2.946 0.784 0.114 0.026 33 2.5 caudalmiddlefrontal 1968 1462 3895 2.330 0.607 0.157 0.044 37 3.8 cuneus 331 234 1090 3.516 0.716 0.136 0.032 6 0.4 entorhinal 2928 1994 7509 3.068 0.737 0.121 0.023 40 2.9 fusiform 6305 4372 17038 3.113 0.721 0.123 0.029 87 7.9 inferiorparietal 2908 2080 8690 3.059 0.856 0.129 0.032 43 4.3 inferiortemporal 1215 781 2811 2.549 1.162 0.107 0.026 19 1.2 isthmuscingulate 5647 4132 12365 2.406 0.630 0.142 0.037 104 8.6 lateraloccipital 3253 2255 8350 3.105 0.771 0.121 0.030 36 4.1 lateralorbitofrontal 3317 2391 7600 2.563 0.751 0.135 0.034 50 4.3 lingual 2545 1762 7353 3.248 0.935 0.112 0.030 31 2.7 medialorbitofrontal 3977 2662 13340 3.287 0.810 0.114 0.028 50 4.9 middletemporal 799 488 1506 2.763 0.618 0.077 0.015 5 0.4 parahippocampal 1832 1210 4394 3.049 0.573 0.110 0.021 19 1.7 paracentral 1450 980 3411 2.877 0.668 0.108 0.021 15 1.1 parsopercularis 1134 900 4790 3.276 0.804 0.157 0.042 21 2.2 parsorbitalis 1770 1208 4730 3.041 0.672 0.110 0.023 18 1.5 parstriangularis 1747 1191 2500 2.207 0.608 0.119 0.032 17 2.1 pericalcarine 5101 3447 9303 2.275 0.741 0.119 0.030 64 7.0 postcentral 1446 959 3142 2.631 0.939 0.112 0.021 16 1.2 posteriorcingulate 5802 3873 12977 2.751 0.696 0.107 0.022 51 5.4 precentral 4695 3120 11379 3.126 0.755 0.111 0.024 47 5.0 precuneus 762 489 1646 3.227 0.744 0.073 0.012 3 0.4 rostralanteriorcingulate 6610 4756 18666 2.911 0.756 0.132 0.031 103 8.7 rostralmiddlefrontal 7634 5335 23784 3.329 0.798 0.121 0.029 104 8.9 superiorfrontal 6315 4385 14085 2.670 0.613 0.120 0.027 81 7.3 superiorparietal 5036 3296 14245 3.312 0.744 0.095 0.019 45 3.8 superiortemporal 5849 3890 13920 2.953 0.701 0.114 0.027 80 6.4 supramarginal 442 337 2055 3.632 0.724 0.164 0.038 11 0.7 frontalpole 465 378 2953 4.019 0.811 0.141 0.035 11 0.7 temporalpole 600 412 1679 2.855 0.855 0.130 0.034 11 0.8 transversetemporal 3146 1955 8012 3.547 1.011 0.105 0.033 32 4.6 insula @#@FSTIME 2022:04:18:07:11:47 mris_anatomical_stats N 14 e 10.66 S 0.23 U 10.38 P 99% M 403008 F 0 R 112862 W 0 c 15 w 134 I 0 O 296 L 8.18 9.36 11.98 @#@FSLOADPOST 2022:04:18:07:11:57 mris_anatomical_stats N 14 8.23 9.33 11.94 mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab MOD1707_Y2_a_fs7p2 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1174 724 2194 3.046 0.593 0.132 0.038 21 1.7 bankssts 999 918 2581 3.159 0.826 0.152 0.042 21 1.3 caudalanteriorcingulate 2450 2556 6772 2.946 0.784 0.180 0.040 63 4.0 caudalmiddlefrontal 1968 2019 3895 2.330 0.607 0.185 0.048 49 4.2 cuneus 331 437 1090 3.516 0.716 0.272 0.073 14 1.2 entorhinal 2928 2845 7509 3.068 0.737 0.163 0.039 62 4.6 fusiform 6305 6501 17038 3.113 0.721 0.183 0.048 164 12.1 inferiorparietal 2908 3372 8690 3.059 0.856 0.212 0.052 132 6.7 inferiortemporal 1215 1253 2811 2.549 1.162 0.196 0.052 35 2.8 isthmuscingulate 5647 6271 12365 2.406 0.630 0.197 0.045 185 11.5 lateraloccipital 3253 3114 8350 3.105 0.771 0.177 0.045 125 5.8 lateralorbitofrontal 3317 3651 7600 2.563 0.751 0.189 0.046 69 6.2 lingual 2545 2856 7353 3.248 0.935 0.203 0.056 107 5.9 medialorbitofrontal 3977 4952 13340 3.287 0.810 0.203 0.047 106 8.6 middletemporal 799 625 1506 2.763 0.618 0.155 0.044 15 1.8 parahippocampal 1832 1633 4394 3.049 0.573 0.146 0.037 37 2.5 paracentral 1450 1355 3411 2.877 0.668 0.164 0.040 22 2.6 parsopercularis 1134 1915 4790 3.276 0.804 0.296 0.061 31 3.0 parsorbitalis 1770 1797 4730 3.041 0.672 0.177 0.045 37 3.2 parstriangularis 1747 1103 2500 2.207 0.608 0.145 0.055 77 3.5 pericalcarine 5101 4701 9303 2.275 0.741 0.156 0.034 78 7.6 postcentral 1446 1302 3142 2.631 0.939 0.175 0.048 79 3.0 posteriorcingulate 5802 5064 12977 2.751 0.696 0.146 0.034 89 8.3 precentral 4695 4059 11379 3.126 0.755 0.169 0.046 160 8.4 precuneus 762 560 1646 3.227 0.744 0.168 0.045 36 1.2 rostralanteriorcingulate 6610 7613 18666 2.911 0.756 0.207 0.047 167 14.1 rostralmiddlefrontal 7634 8247 23784 3.329 0.798 0.185 0.046 211 13.5 superiorfrontal 6315 6073 14085 2.670 0.613 0.172 0.042 156 11.2 superiorparietal 5036 4979 14245 3.312 0.744 0.161 0.037 74 8.0 superiortemporal 5849 5276 13920 2.953 0.701 0.162 0.041 120 10.1 supramarginal 442 806 2055 3.632 0.724 0.305 0.054 10 1.1 frontalpole 465 974 2953 4.019 0.811 0.308 0.065 10 1.3 temporalpole 600 686 1679 2.855 0.855 0.199 0.058 11 1.4 transversetemporal 3146 2186 8012 3.547 1.011 0.163 0.053 109 7.2 insula @#@FSTIME 2022:04:18:07:11:57 mris_anatomical_stats N 14 e 10.42 S 0.21 U 10.18 P 99% M 403064 F 0 R 112864 W 0 c 10 w 133 I 0 O 296 L 8.23 9.33 11.94 @#@FSLOADPOST 2022:04:18:07:12:08 mris_anatomical_stats N 14 8.27 9.30 11.90 #----------------------------------------- #@# Parcellation Stats 2 lh Mon Apr 18 07:12:08 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab MOD1707_Y2_a_fs7p2 lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 889 634 2728 3.308 0.740 0.137 0.036 18 1.2 G_and_S_frontomargin 1067 741 2807 2.729 0.883 0.130 0.030 13 1.4 G_and_S_occipital_inf 1210 857 3391 2.896 0.598 0.125 0.028 16 1.4 G_and_S_paracentral 1201 833 3601 3.277 0.726 0.130 0.025 19 1.2 G_and_S_subcentral 559 464 2214 3.471 0.758 0.165 0.041 11 1.0 G_and_S_transv_frontopol 1794 1188 4936 3.424 0.781 0.104 0.021 18 1.7 G_and_S_cingul-Ant 1017 681 1971 3.025 0.521 0.096 0.015 6 0.7 G_and_S_cingul-Mid-Ant 1123 765 2767 3.022 0.778 0.113 0.025 13 1.3 G_and_S_cingul-Mid-Post 352 260 1284 3.261 1.011 0.126 0.032 4 0.4 G_cingul-Post-dorsal 232 166 676 2.638 1.084 0.143 0.043 5 0.4 G_cingul-Post-ventral 1740 1302 3646 2.267 0.588 0.154 0.036 28 2.7 G_cuneus 1000 712 3563 3.419 0.567 0.113 0.023 20 0.8 G_front_inf-Opercular 318 255 1417 3.340 0.705 0.161 0.044 7 0.6 G_front_inf-Orbital 802 575 3238 3.507 0.591 0.128 0.031 14 0.9 G_front_inf-Triangul 3307 2518 12716 3.244 0.745 0.143 0.038 86 4.5 G_front_middle 5530 4053 21053 3.600 0.774 0.136 0.036 101 7.4 G_front_sup 534 348 1556 3.286 1.216 0.098 0.034 4 0.6 G_Ins_lg_and_S_cent_ins 594 350 2670 4.582 0.457 0.064 0.016 2 0.3 G_insular_short 1647 1193 4881 2.756 0.749 0.140 0.033 31 2.2 G_occipital_middle 1054 797 2123 2.239 0.606 0.145 0.039 23 1.9 G_occipital_sup 1368 994 4582 3.238 0.677 0.146 0.042 40 2.2 G_oc-temp_lat-fusifor 2720 2137 7148 2.536 0.709 0.168 0.048 58 6.2 G_oc-temp_med-Lingual 914 566 2382 2.995 0.710 0.099 0.024 15 0.7 G_oc-temp_med-Parahip 1946 1402 7676 3.470 0.711 0.136 0.036 42 2.9 G_orbital 2255 1681 8410 3.294 0.662 0.138 0.036 51 3.0 G_pariet_inf-Angular 2367 1602 7233 3.149 0.716 0.126 0.031 42 2.8 G_pariet_inf-Supramar 2211 1662 7302 2.950 0.752 0.139 0.032 36 3.1 G_parietal_sup 1589 1078 3535 2.424 0.543 0.125 0.026 29 1.6 G_postcentral 1628 1206 5514 3.094 0.641 0.130 0.031 23 2.2 G_precentral 2137 1536 7878 3.435 0.811 0.139 0.037 44 3.0 G_precuneus 927 734 3267 3.127 0.877 0.147 0.046 29 1.7 G_rectus 560 370 1021 2.621 1.021 0.137 0.053 7 1.3 G_subcallosal 455 291 1174 3.213 0.583 0.119 0.021 6 0.4 G_temp_sup-G_T_transv 1821 1293 6712 3.221 0.897 0.142 0.042 38 3.5 G_temp_sup-Lateral 533 344 1526 3.262 0.684 0.085 0.021 2 0.4 G_temp_sup-Plan_polar 896 618 2188 3.034 0.631 0.104 0.023 10 0.8 G_temp_sup-Plan_tempo 1557 1116 5680 3.126 0.939 0.131 0.039 25 2.4 G_temporal_inf 2601 1831 8910 3.059 0.992 0.151 0.045 58 5.0 G_temporal_middle 295 190 411 2.121 0.515 0.082 0.007 1 0.1 Lat_Fis-ant-Horizont 249 162 529 3.074 0.503 0.099 0.015 2 0.1 Lat_Fis-ant-Vertical 1306 808 1906 2.770 0.541 0.092 0.015 7 0.9 Lat_Fis-post 2171 1569 4078 2.291 0.582 0.150 0.041 40 3.4 Pole_occipital 1339 1003 6110 3.545 0.816 0.153 0.049 30 2.8 Pole_temporal 2081 1483 3098 2.443 0.783 0.118 0.030 16 2.6 S_calcarine 2322 1428 2770 2.199 0.485 0.082 0.013 8 1.4 S_central 946 587 1470 2.710 0.537 0.073 0.009 3 0.4 S_cingul-Marginalis 532 331 927 3.169 0.788 0.078 0.013 2 0.3 S_circular_insula_ant 1384 844 2353 3.329 0.764 0.069 0.010 4 0.6 S_circular_insula_inf 1598 1001 2485 2.864 0.598 0.087 0.015 6 1.1 S_circular_insula_sup 685 489 1485 2.871 0.776 0.125 0.026 7 0.9 S_collat_transv_ant 415 260 569 2.234 0.592 0.149 0.072 14 0.8 S_collat_transv_post 1765 1174 3215 2.648 0.522 0.098 0.019 10 1.4 S_front_inf 1790 1230 3663 2.721 0.579 0.117 0.028 22 2.0 S_front_middle 2518 1699 5337 2.905 0.562 0.099 0.017 17 1.8 S_front_sup 288 199 449 2.498 0.423 0.119 0.019 2 0.3 S_interm_prim-Jensen 3015 1982 5162 2.621 0.577 0.093 0.016 22 2.1 S_intrapariet_and_P_trans 1091 756 1648 2.171 0.457 0.125 0.026 13 1.3 S_oc_middle_and_Lunatus 1064 688 1463 2.434 0.458 0.107 0.021 9 0.9 S_oc_sup_and_transversal 642 406 766 2.452 0.620 0.113 0.022 4 0.6 S_occipital_ant 724 481 1344 2.780 0.601 0.095 0.018 5 0.5 S_oc-temp_lat 1787 1153 2644 2.506 0.564 0.088 0.015 9 1.1 S_oc-temp_med_and_Lingual 369 235 519 2.541 0.522 0.100 0.014 2 0.2 S_orbital_lateral 695 449 998 2.459 0.658 0.103 0.021 5 0.5 S_orbital_med-olfact 1183 764 2369 2.903 0.751 0.101 0.017 8 0.9 S_orbital-H_Shaped 2020 1283 3246 2.901 0.697 0.091 0.016 10 1.4 S_parieto_occipital 1186 665 1043 1.709 0.565 0.093 0.016 12 0.8 S_pericallosal 2086 1336 2903 2.359 0.451 0.098 0.017 14 1.8 S_postcentral 1148 708 1539 2.524 0.488 0.087 0.015 5 0.7 S_precentral-inf-part 832 534 1285 2.552 0.623 0.096 0.015 4 0.7 S_precentral-sup-part 493 318 1105 3.561 0.902 0.082 0.011 2 0.2 S_suborbital 950 632 1785 3.044 0.716 0.110 0.022 6 1.0 S_subparietal 1423 921 2247 2.794 0.646 0.104 0.018 8 1.3 S_temporal_inf 5091 3246 9216 2.838 0.610 0.090 0.016 35 3.4 S_temporal_sup 445 296 1064 3.145 0.856 0.112 0.018 4 0.3 S_temporal_transverse @#@FSTIME 2022:04:18:07:12:08 mris_anatomical_stats N 14 e 10.88 S 0.20 U 10.62 P 99% M 406168 F 0 R 113754 W 0 c 13 w 215 I 0 O 632 L 8.27 9.30 11.90 @#@FSLOADPOST 2022:04:18:07:12:19 mris_anatomical_stats N 14 8.23 9.26 11.86 #----------------------------------------- #@# Parcellation Stats 2 rh Mon Apr 18 07:12:19 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab MOD1707_Y2_a_fs7p2 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 756 579 2517 2.958 0.801 0.147 0.030 12 1.0 G_and_S_frontomargin 939 687 2125 2.360 0.746 0.130 0.031 12 1.3 G_and_S_occipital_inf 1174 798 3033 2.825 0.643 0.121 0.025 16 1.1 G_and_S_paracentral 1468 1048 3488 2.768 0.778 0.150 0.040 22 2.8 G_and_S_subcentral 852 666 3156 3.246 0.923 0.162 0.044 20 1.8 G_and_S_transv_frontopol 2446 1623 6167 3.396 0.694 0.110 0.025 30 2.6 G_and_S_cingul-Ant 1256 856 2918 3.008 0.770 0.111 0.024 17 1.1 G_and_S_cingul-Mid-Ant 1396 923 3086 2.879 0.624 0.104 0.018 12 1.0 G_and_S_cingul-Mid-Post 293 215 1204 3.254 0.987 0.124 0.037 5 0.4 G_cingul-Post-dorsal 238 174 1033 3.698 0.885 0.151 0.044 8 0.4 G_cingul-Post-ventral 1855 1413 3895 2.317 0.605 0.161 0.045 36 3.7 G_cuneus 929 685 3328 3.207 0.715 0.133 0.030 16 1.0 G_front_inf-Opercular 414 327 1724 3.367 0.680 0.151 0.042 9 0.6 G_front_inf-Orbital 627 451 2348 3.378 0.583 0.126 0.033 9 0.8 G_front_inf-Triangul 2924 2153 11821 3.311 0.822 0.146 0.038 65 4.2 G_front_middle 4756 3481 18915 3.640 0.743 0.133 0.034 81 6.3 G_front_sup 522 331 1946 4.046 1.173 0.111 0.038 9 0.8 G_Ins_lg_and_S_cent_ins 608 348 2592 4.470 0.625 0.093 0.031 6 0.7 G_insular_short 1647 1178 5379 3.048 0.737 0.135 0.032 30 2.2 G_occipital_middle 1371 981 3378 2.598 0.568 0.150 0.039 35 2.0 G_occipital_sup 1424 1006 4638 3.270 0.587 0.142 0.032 31 1.7 G_oc-temp_lat-fusifor 1851 1375 5582 2.906 0.683 0.149 0.042 35 2.9 G_oc-temp_med-Lingual 727 469 1942 3.120 0.788 0.110 0.028 9 0.7 G_oc-temp_med-Parahip 2307 1778 9623 3.396 0.765 0.144 0.041 42 3.9 G_orbital 2624 1882 9156 3.345 0.721 0.142 0.040 61 4.3 G_pariet_inf-Angular 2657 1843 8102 3.102 0.740 0.135 0.036 52 3.8 G_pariet_inf-Supramar 1971 1479 5994 2.828 0.666 0.133 0.035 34 2.9 G_parietal_sup 1687 1197 3623 2.257 0.758 0.142 0.042 34 3.1 G_postcentral 1739 1199 5636 3.128 0.670 0.116 0.027 22 1.8 G_precentral 1841 1317 6698 3.327 0.759 0.144 0.038 33 3.0 G_precuneus 791 621 3146 3.161 0.806 0.139 0.043 18 1.3 G_rectus 597 408 966 2.603 1.080 0.162 0.074 10 2.2 G_subcallosal 448 311 1577 3.184 0.887 0.147 0.041 11 0.8 G_temp_sup-G_T_transv 1646 1159 6920 3.660 0.736 0.131 0.033 29 2.1 G_temp_sup-Lateral 765 520 2097 3.210 0.860 0.093 0.028 5 0.8 G_temp_sup-Plan_polar 925 611 1993 2.810 0.626 0.083 0.016 5 0.5 G_temp_sup-Plan_tempo 1486 1119 5339 3.079 0.913 0.140 0.043 29 2.7 G_temporal_inf 2246 1572 9719 3.509 0.828 0.138 0.037 43 3.7 G_temporal_middle 196 124 252 2.336 0.583 0.092 0.013 1 0.1 Lat_Fis-ant-Horizont 203 136 322 2.765 0.688 0.095 0.010 1 0.1 Lat_Fis-ant-Vertical 1687 1048 2475 2.903 0.528 0.083 0.015 6 1.0 Lat_Fis-post 2885 2128 5683 2.244 0.598 0.147 0.041 54 4.4 Pole_occipital 1165 912 6316 3.836 0.860 0.147 0.037 21 1.8 Pole_temporal 1915 1283 2886 2.426 0.808 0.103 0.025 13 1.9 S_calcarine 2448 1526 2866 2.131 0.498 0.082 0.014 10 1.5 S_central 1005 653 1800 2.869 0.580 0.088 0.015 4 0.6 S_cingul-Marginalis 626 393 1053 3.038 0.679 0.091 0.016 2 0.4 S_circular_insula_ant 1103 652 1848 3.256 0.698 0.057 0.009 3 0.4 S_circular_insula_inf 1434 870 2332 3.151 0.585 0.082 0.014 5 1.0 S_circular_insula_sup 491 339 1182 3.499 0.749 0.119 0.025 5 0.5 S_collat_transv_ant 207 134 271 2.003 0.504 0.102 0.021 1 0.2 S_collat_transv_post 1232 854 2467 2.563 0.585 0.103 0.018 9 1.0 S_front_inf 2142 1448 3934 2.726 0.583 0.115 0.025 21 2.2 S_front_middle 1945 1280 3781 2.840 0.506 0.097 0.017 14 1.5 S_front_sup 659 422 940 2.751 0.779 0.113 0.021 4 0.8 S_interm_prim-Jensen 2751 1828 4453 2.621 0.574 0.102 0.017 20 2.3 S_intrapariet_and_P_trans 683 488 1367 2.503 0.544 0.138 0.031 9 1.0 S_oc_middle_and_Lunatus 1409 913 2213 2.635 0.647 0.123 0.027 14 1.6 S_oc_sup_and_transversal 456 290 540 2.203 0.529 0.103 0.020 4 0.3 S_occipital_ant 501 353 917 2.660 0.527 0.106 0.016 4 0.4 S_oc-temp_lat 1739 1103 2437 2.547 0.521 0.086 0.011 7 0.9 S_oc-temp_med_and_Lingual 602 378 826 2.628 0.553 0.104 0.017 3 0.6 S_orbital_lateral 719 467 1006 2.320 0.480 0.109 0.025 5 0.7 S_orbital_med-olfact 1112 753 2332 3.129 0.730 0.115 0.022 8 1.2 S_orbital-H_Shaped 1983 1265 3221 2.931 0.749 0.097 0.017 12 1.6 S_parieto_occipital 1413 824 1537 1.986 0.871 0.096 0.016 14 0.9 S_pericallosal 2004 1309 3007 2.255 0.500 0.091 0.016 15 1.4 S_postcentral 1490 976 2616 2.467 0.577 0.096 0.017 10 1.2 S_precentral-inf-part 1183 758 1840 2.572 0.537 0.106 0.019 8 1.0 S_precentral-sup-part 270 186 718 3.456 0.920 0.095 0.014 1 0.2 S_suborbital 1167 769 2175 2.893 0.688 0.112 0.023 13 1.4 S_subparietal 1142 744 1992 2.799 0.595 0.108 0.021 9 1.1 S_temporal_inf 5189 3265 9871 3.077 0.623 0.088 0.016 25 3.7 S_temporal_sup 293 194 480 2.292 0.676 0.094 0.011 1 0.2 S_temporal_transverse @#@FSTIME 2022:04:18:07:12:19 mris_anatomical_stats N 14 e 10.90 S 0.21 U 10.61 P 99% M 402956 F 0 R 110090 W 0 c 23 w 220 I 0 O 632 L 8.23 9.26 11.86 @#@FSLOADPOST 2022:04:18:07:12:30 mris_anatomical_stats N 14 8.12 9.20 11.81 #----------------------------------------- #@# Parcellation Stats 3 lh Mon Apr 18 07:12:30 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab MOD1707_Y2_a_fs7p2 lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1312 851 2887 3.001 0.741 0.105 0.018 15 1.0 caudalanteriorcingulate 2422 1663 5601 2.741 0.675 0.115 0.027 35 2.3 caudalmiddlefrontal 2599 1822 4818 2.362 0.541 0.125 0.027 30 3.0 cuneus 394 250 1207 3.134 0.845 0.122 0.033 9 0.5 entorhinal 2931 2036 7406 2.927 0.695 0.122 0.031 52 3.6 fusiform 5428 3793 14564 2.940 0.693 0.115 0.026 80 5.3 inferiorparietal 3578 2504 10647 3.067 0.847 0.126 0.033 47 5.0 inferiortemporal 1274 808 2564 2.448 1.126 0.105 0.028 14 1.3 isthmuscingulate 6313 4417 12463 2.401 0.664 0.140 0.036 108 9.2 lateraloccipital 3433 2343 9316 3.114 0.817 0.121 0.030 52 4.1 lateralorbitofrontal 3864 2966 8860 2.489 0.696 0.151 0.041 65 7.4 lingual 2163 1542 5982 3.054 0.936 0.126 0.037 43 3.2 medialorbitofrontal 5571 3785 14765 2.920 0.841 0.121 0.031 81 7.4 middletemporal 892 540 1864 2.838 0.677 0.074 0.014 8 0.4 parahippocampal 1941 1274 4692 2.979 0.618 0.098 0.020 16 1.5 paracentral 1604 1079 4316 3.171 0.595 0.105 0.020 21 1.1 parsopercularis 924 669 2832 3.022 0.797 0.120 0.023 13 0.9 parsorbitalis 1968 1300 4863 2.920 0.731 0.107 0.021 19 1.8 parstriangularis 1873 1290 2405 2.125 0.530 0.130 0.034 23 2.6 pericalcarine 5317 3496 10246 2.459 0.677 0.109 0.022 65 4.7 postcentral 1577 1047 3522 2.605 0.970 0.109 0.020 20 1.6 posteriorcingulate 4933 3330 11666 2.856 0.665 0.109 0.022 47 4.9 precentral 4594 3194 12103 3.230 0.762 0.119 0.026 52 5.0 precuneus 1144 744 3311 3.396 0.987 0.101 0.022 14 1.2 rostralanteriorcingulate 5497 4017 17059 3.028 0.759 0.131 0.030 94 6.9 rostralmiddlefrontal 8945 6430 28235 3.390 0.760 0.125 0.031 123 10.6 superiorfrontal 5198 3619 12409 2.745 0.709 0.117 0.025 65 5.7 superiorparietal 6753 4492 18164 3.128 0.775 0.111 0.027 78 7.8 superiortemporal 4860 3258 11708 2.912 0.686 0.113 0.025 60 4.9 supramarginal 667 428 1488 3.094 0.616 0.117 0.019 8 0.5 transversetemporal 2414 1474 6611 3.727 0.935 0.072 0.016 9 1.4 insula @#@FSTIME 2022:04:18:07:12:30 mris_anatomical_stats N 14 e 10.53 S 0.21 U 10.26 P 99% M 406056 F 0 R 113752 W 0 c 19 w 134 I 0 O 272 L 8.12 9.20 11.81 @#@FSLOADPOST 2022:04:18:07:12:40 mris_anatomical_stats N 14 7.95 9.12 11.76 #----------------------------------------- #@# Parcellation Stats 3 rh Mon Apr 18 07:12:40 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab MOD1707_Y2_a_fs7p2 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 1143 774 2935 3.064 0.878 0.122 0.023 19 1.1 caudalanteriorcingulate 2507 1727 6823 2.947 0.761 0.115 0.026 34 2.6 caudalmiddlefrontal 2475 1820 4883 2.355 0.585 0.143 0.039 41 4.1 cuneus 282 198 928 3.513 0.692 0.139 0.036 5 0.4 entorhinal 2703 1826 6582 3.015 0.694 0.117 0.021 36 2.5 fusiform 6385 4403 17530 3.145 0.731 0.124 0.029 91 8.2 inferiorparietal 3226 2320 10008 3.101 0.895 0.134 0.034 48 5.0 inferiortemporal 1189 766 2716 2.536 1.155 0.108 0.027 20 1.2 isthmuscingulate 5676 4147 12380 2.404 0.623 0.143 0.037 104 8.5 lateraloccipital 3638 2595 10320 3.117 0.806 0.131 0.033 47 5.1 lateralorbitofrontal 3191 2308 7312 2.555 0.750 0.134 0.033 47 4.2 lingual 2054 1474 6114 3.108 0.950 0.132 0.044 33 3.7 medialorbitofrontal 4694 3120 14563 3.237 0.785 0.109 0.026 53 5.2 middletemporal 846 517 1588 2.772 0.619 0.078 0.015 5 0.4 parahippocampal 1989 1309 4707 3.027 0.593 0.110 0.021 20 1.8 paracentral 1685 1141 3939 2.877 0.671 0.111 0.022 19 1.4 parsopercularis 1040 757 3732 3.200 0.805 0.144 0.035 17 1.7 parsorbitalis 1705 1167 4293 2.942 0.684 0.104 0.022 13 1.4 parstriangularis 1761 1192 2566 2.223 0.620 0.121 0.033 18 2.2 pericalcarine 5711 3857 10384 2.280 0.731 0.119 0.030 71 7.9 postcentral 1524 1010 3511 2.694 0.927 0.113 0.022 18 1.3 posteriorcingulate 5576 3726 12605 2.761 0.705 0.108 0.022 49 5.2 precentral 4687 3173 11808 3.145 0.762 0.115 0.025 48 5.0 precuneus 1129 743 2742 3.390 0.825 0.099 0.025 17 1.3 rostralanteriorcingulate 4871 3517 14740 2.989 0.758 0.135 0.032 78 6.6 rostralmiddlefrontal 9598 6749 28774 3.244 0.810 0.120 0.028 124 11.0 superiorfrontal 5180 3565 11590 2.695 0.610 0.120 0.027 68 6.1 superiorparietal 6370 4239 18847 3.301 0.787 0.101 0.022 68 5.6 superiortemporal 5535 3687 12839 2.945 0.663 0.112 0.026 73 5.8 supramarginal 582 401 1688 2.915 0.879 0.129 0.035 10 0.8 transversetemporal 2700 1619 7316 3.755 0.884 0.080 0.020 15 2.1 insula @#@FSTIME 2022:04:18:07:12:40 mris_anatomical_stats N 14 e 10.26 S 0.24 U 9.99 P 99% M 402832 F 0 R 110087 W 0 c 19 w 128 I 0 O 272 L 7.95 9.12 11.76 @#@FSLOADPOST 2022:04:18:07:12:51 mris_anatomical_stats N 14 7.74 9.02 11.68 #-------------------------------------------- #@# ASeg Stats Mon Apr 18 07:12:51 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2 mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/pkg/freesurfer7.2/ASegStatsLUT.txt --subject MOD1707_Y2_a_fs7p2 setting seed for random number genererator to 1234 7.2.0 cwd cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/pkg/freesurfer7.2/ASegStatsLUT.txt --subject MOD1707_Y2_a_fs7p2 sysname Linux hostname hopper machine x86_64 user dustj whitesurfname white UseRobust 0 atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) Computing euler number orig.nofix lheno = -78, rheno = -76 orig.nofix lhholes = 40, rhholes = 39 Loading mri/aseg.mgz Getting Brain Volume Statistics Loading mri/norm.mgz Loading mri/norm.mgz Voxel Volume is 0.511992 mm^3 Generating list of segmentation ids Found 50 segmentations Computing statistics for each segmentation MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab MRIcopyHeader(): source has ctab Reporting on 45 segmentations Using PrintSegStat mri_segstats done @#@FSTIME 2022:04:18:07:12:51 mri_segstats N 32 e 296.58 S 0.98 U 295.57 P 99% M 523464 F 0 R 1444487 W 0 c 463 w 56 I 0 O 24 L 7.74 9.02 11.68 @#@FSLOADPOST 2022:04:18:07:17:47 mri_segstats N 32 6.49 7.66 10.38 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label #-------------------------------------------- #@# BA_exvivo Labels lh Mon Apr 18 07:17:47 CDT 2022 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA1_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA1_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4129 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4129 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 19 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.label 4148 mri_label2label: Done @#@FSTIME 2022:04:18:07:17:47 mri_label2label N 12 e 4.35 S 0.25 U 4.09 P 99% M 497636 F 0 R 146249 W 0 c 8 w 51 I 0 O 192 L 6.49 7.66 10.38 @#@FSLOADPOST 2022:04:18:07:17:52 mri_label2label N 12 6.53 7.65 10.36 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA2_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA2_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 7909 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7909 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 61 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.label 7970 mri_label2label: Done @#@FSTIME 2022:04:18:07:17:52 mri_label2label N 12 e 4.92 S 0.25 U 4.66 P 99% M 498036 F 0 R 146317 W 0 c 9 w 50 I 0 O 360 L 6.53 7.65 10.36 @#@FSLOADPOST 2022:04:18:07:17:57 mri_label2label N 12 6.49 7.62 10.34 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3a_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA3a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4077 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4077 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 1 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.label 4078 mri_label2label: Done @#@FSTIME 2022:04:18:07:17:57 mri_label2label N 12 e 4.93 S 0.51 U 4.41 P 99% M 497640 F 0 R 206151 W 0 c 11 w 29 I 0 O 168 L 6.49 7.62 10.34 @#@FSLOADPOST 2022:04:18:07:18:02 mri_label2label N 12 6.45 7.59 10.31 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3b_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA3b_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 5983 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5983 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 17 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.label 6000 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:02 mri_label2label N 12 e 4.66 S 0.29 U 4.36 P 99% M 497700 F 0 R 146275 W 0 c 9 w 41 I 0 O 264 L 6.45 7.59 10.31 @#@FSLOADPOST 2022:04:18:07:18:06 mri_label2label N 12 6.42 7.56 10.29 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4a_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA4a_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 5784 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5784 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 12 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.label 5796 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:06 mri_label2label N 12 e 4.54 S 0.27 U 4.26 P 99% M 497948 F 0 R 146276 W 0 c 18 w 39 I 0 O 240 L 6.42 7.56 10.29 @#@FSLOADPOST 2022:04:18:07:18:11 mri_label2label N 12 6.38 7.54 10.27 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4p_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA4p_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4070 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4070 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 6 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.label 4076 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:11 mri_label2label N 12 e 4.33 S 0.27 U 4.04 P 99% M 497516 F 0 R 146244 W 0 c 8 w 35 I 0 O 168 L 6.38 7.54 10.27 @#@FSLOADPOST 2022:04:18:07:18:15 mri_label2label N 12 6.38 7.54 10.27 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA6_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA6_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA6_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 13589 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 13589 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 92 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.label 13681 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:15 mri_label2label N 12 e 7.18 S 0.44 U 6.73 P 99% M 498348 F 0 R 190023 W 0 c 13 w 46 I 0 O 616 L 6.38 7.54 10.27 @#@FSLOADPOST 2022:04:18:07:18:23 mri_label2label N 12 6.32 7.49 10.22 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA44_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA44_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA44_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4181 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4181 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 22 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.label 4203 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:23 mri_label2label N 12 e 4.26 S 0.30 U 3.95 P 99% M 497688 F 0 R 146244 W 0 c 7 w 36 I 0 O 192 L 6.32 7.49 10.22 @#@FSLOADPOST 2022:04:18:07:18:27 mri_label2label N 12 6.30 7.46 10.20 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA45_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA45_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA45_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3422 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3422 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 204 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.label 3626 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:27 mri_label2label N 12 e 4.96 S 0.44 U 4.51 P 99% M 497804 F 0 R 206269 W 0 c 11 w 32 I 0 O 248 L 6.30 7.46 10.20 @#@FSLOADPOST 2022:04:18:07:18:32 mri_label2label N 12 6.27 7.44 10.17 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V1_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V1_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.V1_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4641 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4641 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 1086 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.label 5727 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:32 mri_label2label N 12 e 4.85 S 0.41 U 4.43 P 99% M 497648 F 0 R 189793 W 0 c 8 w 39 I 0 O 440 L 6.27 7.44 10.17 @#@FSLOADPOST 2022:04:18:07:18:37 mri_label2label N 12 6.25 7.41 10.15 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V2_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V2_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.V2_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 8114 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8114 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 1550 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.label 9664 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:37 mri_label2label N 12 e 5.69 S 0.43 U 5.24 P 99% M 498056 F 0 R 189466 W 0 c 10 w 54 I 0 O 720 L 6.25 7.41 10.15 @#@FSLOADPOST 2022:04:18:07:18:43 mri_label2label N 12 6.23 7.39 10.13 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.MT_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.MT_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.MT_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2018 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2018 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 102 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.label 2120 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:43 mri_label2label N 12 e 3.97 S 0.33 U 3.64 P 99% M 497428 F 0 R 143412 W 0 c 7 w 34 I 0 O 144 L 6.23 7.39 10.13 @#@FSLOADPOST 2022:04:18:07:18:47 mri_label2label N 12 6.21 7.37 10.11 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.entorhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1290 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1290 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 10 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.label 1300 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:47 mri_label2label N 12 e 4.05 S 0.26 U 3.78 P 99% M 497388 F 0 R 143390 W 0 c 8 w 32 I 0 O 64 L 6.21 7.37 10.11 @#@FSLOADPOST 2022:04:18:07:18:51 mri_label2label N 12 6.21 7.37 10.11 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.perirhinal_exvivo.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1199 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1199 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.label 1213 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:51 mri_label2label N 12 e 4.51 S 0.70 U 3.79 P 99% M 497356 F 0 R 237181 W 0 c 7 w 27 I 0 O 64 L 6.21 7.37 10.11 @#@FSLOADPOST 2022:04:18:07:18:55 mri_label2label N 12 6.19 7.34 10.08 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG1.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.FG1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.FG1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 414 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 414 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./lh.FG1.mpm.vpnl.label 442 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:55 mri_label2label N 12 e 3.83 S 0.26 U 3.56 P 99% M 497344 F 0 R 146180 W 0 c 7 w 27 I 0 O 32 L 6.19 7.34 10.08 @#@FSLOADPOST 2022:04:18:07:18:59 mri_label2label N 12 6.18 7.32 10.06 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG2.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.FG2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.FG2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 703 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 703 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 49 Checking for and removing duplicates Writing label file ./lh.FG2.mpm.vpnl.label 752 mri_label2label: Done @#@FSTIME 2022:04:18:07:18:59 mri_label2label N 12 e 3.93 S 0.25 U 3.68 P 99% M 497468 F 0 R 143387 W 0 c 7 w 28 I 0 O 56 L 6.18 7.32 10.06 @#@FSLOADPOST 2022:04:18:07:19:03 mri_label2label N 12 6.16 7.30 10.04 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG3.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.FG3.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.FG3.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1873 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1873 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 34 Checking for and removing duplicates Writing label file ./lh.FG3.mpm.vpnl.label 1907 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:03 mri_label2label N 12 e 4.12 S 0.27 U 3.84 P 99% M 497304 F 0 R 146200 W 0 c 7 w 25 I 0 O 128 L 6.16 7.30 10.04 @#@FSLOADPOST 2022:04:18:07:19:07 mri_label2label N 12 6.15 7.28 10.02 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG4.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.FG4.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.FG4.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2101 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2101 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 92 Checking for and removing duplicates Writing label file ./lh.FG4.mpm.vpnl.label 2193 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:07 mri_label2label N 12 e 4.02 S 0.28 U 3.73 P 99% M 497456 F 0 R 146208 W 0 c 7 w 34 I 0 O 144 L 6.15 7.28 10.02 @#@FSLOADPOST 2022:04:18:07:19:11 mri_label2label N 12 6.22 7.27 10.00 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc1.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.hOc1.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.hOc1.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3877 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3877 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 788 Checking for and removing duplicates Writing label file ./lh.hOc1.mpm.vpnl.label 4665 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:11 mri_label2label N 12 e 4.36 S 0.24 U 4.11 P 99% M 497616 F 0 R 143452 W 0 c 6 w 46 I 0 O 344 L 6.22 7.27 10.00 @#@FSLOADPOST 2022:04:18:07:19:16 mri_label2label N 12 6.22 7.27 10.00 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc2.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.hOc2.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.hOc2.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2919 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2919 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 684 Checking for and removing duplicates Writing label file ./lh.hOc2.mpm.vpnl.label 3603 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:16 mri_label2label N 12 e 5.00 S 0.54 U 4.45 P 99% M 497684 F 0 R 206270 W 0 c 10 w 34 I 0 O 280 L 6.22 7.27 10.00 @#@FSLOADPOST 2022:04:18:07:19:21 mri_label2label N 12 6.20 7.25 9.98 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc3v.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.hOc3v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1286 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1286 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 288 Checking for and removing duplicates Writing label file ./lh.hOc3v.mpm.vpnl.label 1574 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:21 mri_label2label N 12 e 4.53 S 0.39 U 4.14 P 99% M 497596 F 0 R 178906 W 0 c 16 w 28 I 0 O 128 L 6.18 7.23 9.96 @#@FSLOADPOST 2022:04:18:07:19:25 mri_label2label N 12 6.18 7.23 9.96 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc4v.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.hOc4v.mpm.vpnl.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1006 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1006 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 159 Checking for and removing duplicates Writing label file ./lh.hOc4v.mpm.vpnl.label 1165 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:26 mri_label2label N 12 e 4.00 S 0.28 U 3.71 P 99% M 497360 F 0 R 146193 W 0 c 5 w 31 I 0 O 96 L 6.18 7.23 9.96 @#@FSLOADPOST 2022:04:18:07:19:30 mri_label2label N 12 6.25 7.23 9.94 mris_label2annot --s MOD1707_Y2_a_fs7p2 --ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt Number of ctab entries 9 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt --hemi lh --a mpm.vpnl --maxstatwinner --noverbose --l lh.FG1.mpm.vpnl.label --l lh.FG2.mpm.vpnl.label --l lh.FG3.mpm.vpnl.label --l lh.FG4.mpm.vpnl.label --l lh.hOc1.mpm.vpnl.label --l lh.hOc2.mpm.vpnl.label --l lh.hOc3v.mpm.vpnl.label --l lh.hOc4v.mpm.vpnl.label sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi lh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig 1 1376057 FG1 2 16711935 FG2 3 16711680 FG3 4 1705837 FG4 5 25600 hOc1 6 255 hOc2 7 16776960 hOc3v 8 65535 hOc4v Mapping unhit to unknown Found 95793 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.mpm.vpnl.annot @#@FSTIME 2022:04:18:07:19:30 mris_label2annot N 26 e 0.63 S 0.08 U 0.52 P 95% M 128340 F 0 R 34697 W 0 c 3 w 181 I 0 O 1720 L 6.25 7.23 9.94 @#@FSLOADPOST 2022:04:18:07:19:30 mris_label2annot N 26 6.25 7.23 9.94 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1014 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1014 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 8 Checking for and removing duplicates Writing label file ./lh.BA1_exvivo.thresh.label 1022 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:30 mri_label2label N 12 e 3.83 S 0.28 U 3.54 P 99% M 497396 F 0 R 146194 W 0 c 6 w 28 I 0 O 56 L 6.25 7.23 9.94 @#@FSLOADPOST 2022:04:18:07:19:34 mri_label2label N 12 6.31 7.22 9.93 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2092 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2092 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 2 Checking for and removing duplicates Writing label file ./lh.BA2_exvivo.thresh.label 2094 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:34 mri_label2label N 12 e 4.59 S 0.70 U 3.88 P 99% M 497424 F 0 R 241313 W 0 c 8 w 27 I 0 O 96 L 6.31 7.22 9.93 @#@FSLOADPOST 2022:04:18:07:19:39 mri_label2label N 12 6.29 7.20 9.91 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA3a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1504 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1504 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 1 Checking for and removing duplicates Writing label file ./lh.BA3a_exvivo.thresh.label 1505 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:39 mri_label2label N 12 e 4.04 S 0.25 U 3.78 P 99% M 497560 F 0 R 146198 W 0 c 6 w 29 I 0 O 64 L 6.29 7.20 9.91 @#@FSLOADPOST 2022:04:18:07:19:43 mri_label2label N 12 6.34 7.20 9.89 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA3b_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1996 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1996 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 1 Checking for and removing duplicates Writing label file ./lh.BA3b_exvivo.thresh.label 1997 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:43 mri_label2label N 12 e 4.07 S 0.28 U 3.78 P 99% M 497456 F 0 R 146206 W 0 c 11 w 29 I 0 O 96 L 6.34 7.20 9.89 @#@FSLOADPOST 2022:04:18:07:19:47 mri_label2label N 12 6.32 7.18 9.87 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA4a_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2319 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2319 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 2 Checking for and removing duplicates Writing label file ./lh.BA4a_exvivo.thresh.label 2321 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:47 mri_label2label N 12 e 4.11 S 0.25 U 3.85 P 99% M 497636 F 0 R 143413 W 0 c 18 w 32 I 0 O 104 L 6.32 7.18 9.87 @#@FSLOADPOST 2022:04:18:07:19:51 mri_label2label N 12 6.37 7.17 9.85 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA4p_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1549 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1549 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 2 Checking for and removing duplicates Writing label file ./lh.BA4p_exvivo.thresh.label 1551 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:51 mri_label2label N 12 e 4.06 S 0.28 U 3.78 P 99% M 497360 F 0 R 146195 W 0 c 6 w 30 I 0 O 64 L 6.37 7.17 9.85 @#@FSLOADPOST 2022:04:18:07:19:55 mri_label2label N 12 6.37 7.17 9.85 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA6_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 7035 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 7035 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 28 Checking for and removing duplicates Writing label file ./lh.BA6_exvivo.thresh.label 7063 mri_label2label: Done @#@FSTIME 2022:04:18:07:19:55 mri_label2label N 12 e 4.71 S 0.26 U 4.45 P 99% M 497724 F 0 R 143499 W 0 c 13 w 42 I 0 O 296 L 6.37 7.17 9.85 @#@FSLOADPOST 2022:04:18:07:20:00 mri_label2label N 12 6.34 7.16 9.83 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA44_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1912 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1912 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 13 Checking for and removing duplicates Writing label file ./lh.BA44_exvivo.thresh.label 1925 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:00 mri_label2label N 12 e 3.92 S 0.30 U 3.61 P 99% M 497552 F 0 R 143406 W 0 c 6 w 30 I 0 O 96 L 6.34 7.16 9.83 @#@FSLOADPOST 2022:04:18:07:20:04 mri_label2label N 12 6.23 7.12 9.81 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.BA45_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1151 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1151 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 39 Checking for and removing duplicates Writing label file ./lh.BA45_exvivo.thresh.label 1190 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:04 mri_label2label N 12 e 4.01 S 0.29 U 3.71 P 99% M 497376 F 0 R 143392 W 0 c 12 w 30 I 0 O 80 L 6.23 7.12 9.81 @#@FSLOADPOST 2022:04:18:07:20:08 mri_label2label N 12 6.21 7.10 9.79 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.V1_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3405 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3405 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 755 Checking for and removing duplicates Writing label file ./lh.V1_exvivo.thresh.label 4160 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:08 mri_label2label N 12 e 4.21 S 0.27 U 3.93 P 99% M 497816 F 0 R 146247 W 0 c 5 w 44 I 0 O 312 L 6.21 7.10 9.79 @#@FSLOADPOST 2022:04:18:07:20:13 mri_label2label N 12 6.20 7.08 9.76 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.V2_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3334 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3334 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 740 Checking for and removing duplicates Writing label file ./lh.V2_exvivo.thresh.label 4074 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:13 mri_label2label N 12 e 4.19 S 0.32 U 3.86 P 99% M 497500 F 0 R 146236 W 0 c 6 w 43 I 0 O 320 L 6.20 7.08 9.76 @#@FSLOADPOST 2022:04:18:07:20:17 mri_label2label N 12 6.18 7.06 9.74 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.MT_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 513 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 513 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 42 Checking for and removing duplicates Writing label file ./lh.MT_exvivo.thresh.label 555 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:17 mri_label2label N 12 e 3.85 S 0.25 U 3.59 P 99% M 497336 F 0 R 143379 W 0 c 6 w 28 I 0 O 48 L 6.18 7.06 9.74 @#@FSLOADPOST 2022:04:18:07:20:21 mri_label2label N 12 6.18 7.06 9.74 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 470 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 470 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 3 Checking for and removing duplicates Writing label file ./lh.entorhinal_exvivo.thresh.label 473 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:21 mri_label2label N 12 e 3.85 S 0.29 U 3.55 P 99% M 497572 F 0 R 143384 W 0 c 7 w 26 I 0 O 24 L 6.18 7.06 9.74 @#@FSLOADPOST 2022:04:18:07:20:25 mri_label2label N 12 6.17 7.05 9.72 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/lh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./lh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 450 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 450 nlabel points Performing mapping from target back to the source label 109079 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file ./lh.perirhinal_exvivo.thresh.label 450 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:25 mri_label2label N 12 e 3.89 S 0.28 U 3.60 P 99% M 497376 F 0 R 143378 W 0 c 6 w 26 I 0 O 24 L 6.17 7.05 9.72 @#@FSLOADPOST 2022:04:18:07:20:29 mri_label2label N 12 6.15 7.03 9.70 mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi lh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi lh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.perirhinal_exvivo.label --l lh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi lh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 77510 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.BA_exvivo.annot @#@FSTIME 2022:04:18:07:20:29 mris_label2annot N 38 e 0.71 S 0.06 U 0.58 P 89% M 128624 F 0 R 34836 W 0 c 0 w 231 I 0 O 1712 L 6.15 7.03 9.70 @#@FSLOADPOST 2022:04:18:07:20:29 mris_label2annot N 38 6.15 7.03 9.70 mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi lh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi lh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi lh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 90510 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/lh.BA_exvivo.thresh.annot @#@FSTIME 2022:04:18:07:20:29 mris_label2annot N 38 e 0.64 S 0.09 U 0.52 P 95% M 128468 F 0 R 34774 W 0 c 3 w 228 I 0 O 1712 L 6.15 7.03 9.70 @#@FSLOADPOST 2022:04:18:07:20:30 mris_label2annot N 38 6.15 7.03 9.70 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab MOD1707_Y2_a_fs7p2 lh white computing statistics for each annotation in ./lh.BA_exvivo.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 806 526 2025 2.638 0.561 0.149 0.037 23 1.0 BA1_exvivo 2895 1889 5328 2.499 0.589 0.105 0.020 24 2.7 BA2_exvivo 798 502 803 2.060 0.423 0.108 0.020 4 0.7 BA3a_exvivo 1742 1168 3247 2.345 0.703 0.096 0.017 16 1.1 BA3b_exvivo 1143 784 3132 3.018 0.530 0.113 0.021 11 1.1 BA4a_exvivo 879 541 1357 2.587 0.447 0.082 0.014 4 0.5 BA4p_exvivo 6437 4617 19895 3.174 0.768 0.122 0.030 88 7.7 BA6_exvivo 1554 1050 4236 3.148 0.609 0.107 0.020 22 1.3 BA44_exvivo 2412 1632 6686 3.031 0.715 0.111 0.024 27 2.4 BA45_exvivo 3378 2423 5442 2.134 0.574 0.138 0.039 45 5.3 V1_exvivo 6979 5154 15061 2.488 0.659 0.151 0.041 135 12.1 V2_exvivo 1590 1104 3542 2.582 0.735 0.124 0.028 21 1.7 MT_exvivo 512 332 1172 2.836 0.942 0.092 0.020 3 0.4 perirhinal_exvivo 444 287 1405 3.001 1.202 0.127 0.034 10 0.6 entorhinal_exvivo @#@FSTIME 2022:04:18:07:20:30 mris_anatomical_stats N 12 e 3.96 S 0.21 U 3.73 P 99% M 402572 F 0 R 112850 W 0 c 6 w 103 I 0 O 136 L 6.15 7.03 9.70 @#@FSLOADPOST 2022:04:18:07:20:34 mris_anatomical_stats N 12 6.14 7.01 9.68 mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab MOD1707_Y2_a_fs7p2 lh white computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/lh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 258765 Total vertex volume 258574 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 507 324 1278 2.647 0.493 0.155 0.042 12 0.7 BA1_exvivo 1064 707 1900 2.305 0.493 0.091 0.013 7 0.7 BA2_exvivo 654 406 632 2.081 0.421 0.109 0.022 4 0.6 BA3a_exvivo 1075 705 1554 1.997 0.449 0.072 0.009 3 0.4 BA3b_exvivo 1038 691 2672 2.977 0.524 0.105 0.020 8 0.9 BA4a_exvivo 752 464 1113 2.541 0.486 0.090 0.015 4 0.5 BA4p_exvivo 3487 2548 10564 3.109 0.776 0.132 0.033 51 4.9 BA6_exvivo 1006 695 2912 3.139 0.604 0.109 0.022 18 0.8 BA44_exvivo 872 626 3157 3.357 0.651 0.130 0.031 15 1.0 BA45_exvivo 3566 2559 6110 2.179 0.591 0.136 0.039 46 5.6 V1_exvivo 3622 2781 7563 2.376 0.638 0.162 0.042 67 6.8 V2_exvivo 463 320 983 2.402 0.611 0.123 0.021 6 0.5 MT_exvivo 191 116 334 2.829 0.613 0.081 0.018 1 0.1 perirhinal_exvivo 272 182 948 3.254 0.725 0.105 0.026 2 0.3 entorhinal_exvivo @#@FSTIME 2022:04:18:07:20:34 mris_anatomical_stats N 12 e 3.89 S 0.19 U 3.68 P 99% M 402516 F 0 R 115646 W 0 c 7 w 96 I 0 O 136 L 6.14 7.01 9.68 @#@FSLOADPOST 2022:04:18:07:20:38 mris_anatomical_stats N 12 6.13 6.99 9.66 #-------------------------------------------- #@# BA_exvivo Labels rh Mon Apr 18 07:20:38 CDT 2022 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA1_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 60 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4022 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:38 mri_label2label N 12 e 4.22 S 0.25 U 3.96 P 99% M 495712 F 0 R 142887 W 0 c 5 w 41 I 0 O 208 L 6.13 6.99 9.66 @#@FSLOADPOST 2022:04:18:07:20:42 mri_label2label N 12 6.12 6.98 9.64 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA2_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 69 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 6756 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:42 mri_label2label N 12 e 4.66 S 0.28 U 4.37 P 99% M 495940 F 0 R 142939 W 0 c 7 w 44 I 0 O 312 L 6.12 6.98 9.64 @#@FSLOADPOST 2022:04:18:07:20:47 mri_label2label N 12 6.11 6.96 9.62 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3a_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 11 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 3991 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:47 mri_label2label N 12 e 4.15 S 0.25 U 3.90 P 99% M 495708 F 0 R 142890 W 0 c 7 w 37 I 0 O 176 L 6.11 6.96 9.62 @#@FSLOADPOST 2022:04:18:07:20:51 mri_label2label N 12 6.10 6.94 9.60 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3b_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 43 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 4565 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:51 mri_label2label N 12 e 4.20 S 0.27 U 3.92 P 99% M 495812 F 0 R 142900 W 0 c 6 w 38 I 0 O 216 L 6.10 6.94 9.60 @#@FSLOADPOST 2022:04:18:07:20:56 mri_label2label N 12 6.10 6.94 9.60 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4a_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 17 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 5764 mri_label2label: Done @#@FSTIME 2022:04:18:07:20:56 mri_label2label N 12 e 4.47 S 0.28 U 4.18 P 99% M 495640 F 0 R 142916 W 0 c 11 w 42 I 0 O 248 L 6.10 6.94 9.60 @#@FSLOADPOST 2022:04:18:07:21:00 mri_label2label N 12 6.09 6.93 9.58 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4p_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 7 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 4480 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:00 mri_label2label N 12 e 4.27 S 0.32 U 3.95 P 99% M 495600 F 0 R 142892 W 0 c 6 w 36 I 0 O 192 L 6.09 6.93 9.58 @#@FSLOADPOST 2022:04:18:07:21:04 mri_label2label N 12 6.08 6.91 9.56 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA6_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 129 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 12385 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:05 mri_label2label N 12 e 6.25 S 0.28 U 5.96 P 99% M 496176 F 0 R 143034 W 0 c 21 w 60 I 0 O 576 L 6.08 6.91 9.56 @#@FSLOADPOST 2022:04:18:07:21:11 mri_label2label N 12 6.08 6.90 9.55 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA44_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 111 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 7023 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:11 mri_label2label N 12 e 4.68 S 0.29 U 4.38 P 99% M 495768 F 0 R 142939 W 0 c 13 w 47 I 0 O 368 L 6.08 6.90 9.55 @#@FSLOADPOST 2022:04:18:07:21:15 mri_label2label N 12 5.99 6.87 9.52 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA45_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 278 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 5633 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:16 mri_label2label N 12 e 4.16 S 0.19 U 3.96 P 99% M 495780 F 0 R 142915 W 0 c 6 w 46 I 0 O 336 L 5.99 6.87 9.52 @#@FSLOADPOST 2022:04:18:07:21:20 mri_label2label N 12 5.99 6.85 9.50 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V1_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 763 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 5490 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:20 mri_label2label N 12 e 4.26 S 0.27 U 3.99 P 99% M 495720 F 0 R 142904 W 0 c 6 w 49 I 0 O 392 L 5.99 6.85 9.50 @#@FSLOADPOST 2022:04:18:07:21:24 mri_label2label N 12 5.91 6.82 9.48 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V2_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 1003 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 9019 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:24 mri_label2label N 12 e 4.68 S 0.28 U 4.38 P 99% M 495812 F 0 R 142967 W 0 c 12 w 63 I 0 O 616 L 5.91 6.82 9.48 @#@FSLOADPOST 2022:04:18:07:21:29 mri_label2label N 12 5.84 6.79 9.45 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.MT_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2031 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:29 mri_label2label N 12 e 3.75 S 0.29 U 3.45 P 99% M 495432 F 0 R 142857 W 0 c 5 w 35 I 0 O 128 L 5.84 6.79 9.45 @#@FSLOADPOST 2022:04:18:07:21:33 mri_label2label N 12 5.77 6.76 9.43 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 9 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1047 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:33 mri_label2label N 12 e 3.57 S 0.26 U 3.30 P 99% M 495420 F 0 R 142835 W 0 c 5 w 28 I 0 O 56 L 5.77 6.76 9.43 @#@FSLOADPOST 2022:04:18:07:21:36 mri_label2label N 12 5.71 6.73 9.41 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 752 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:36 mri_label2label N 12 e 3.57 S 0.23 U 3.33 P 99% M 495348 F 0 R 145601 W 0 c 5 w 27 I 0 O 40 L 5.71 6.73 9.41 @#@FSLOADPOST 2022:04:18:07:21:40 mri_label2label N 12 5.71 6.73 9.41 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG1.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.FG1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG1.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.FG1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 541 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 541 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 21 Checking for and removing duplicates Writing label file ./rh.FG1.mpm.vpnl.label 562 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:40 mri_label2label N 12 e 3.47 S 0.28 U 3.18 P 99% M 495272 F 0 R 142823 W 0 c 4 w 31 I 0 O 40 L 5.71 6.73 9.41 @#@FSLOADPOST 2022:04:18:07:21:43 mri_label2label N 12 5.65 6.70 9.38 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG2.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.FG2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG2.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.FG2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 721 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 721 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 52 Checking for and removing duplicates Writing label file ./rh.FG2.mpm.vpnl.label 773 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:43 mri_label2label N 12 e 3.67 S 0.25 U 3.41 P 99% M 495364 F 0 R 142830 W 0 c 5 w 28 I 0 O 56 L 5.65 6.70 9.38 @#@FSLOADPOST 2022:04:18:07:21:47 mri_label2label N 12 5.52 6.66 9.35 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG3.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.FG3.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG3.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.FG3.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1523 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1523 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 46 Checking for and removing duplicates Writing label file ./rh.FG3.mpm.vpnl.label 1569 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:47 mri_label2label N 12 e 3.63 S 0.32 U 3.30 P 99% M 495428 F 0 R 142847 W 0 c 5 w 34 I 0 O 112 L 5.52 6.66 9.35 @#@FSLOADPOST 2022:04:18:07:21:51 mri_label2label N 12 5.52 6.66 9.35 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG4.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.FG4.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.FG4.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.FG4.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1586 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1586 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 29 Checking for and removing duplicates Writing label file ./rh.FG4.mpm.vpnl.label 1615 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:51 mri_label2label N 12 e 3.67 S 0.26 U 3.40 P 99% M 495324 F 0 R 142848 W 0 c 6 w 31 I 0 O 96 L 5.52 6.66 9.35 @#@FSLOADPOST 2022:04:18:07:21:55 mri_label2label N 12 5.40 6.61 9.32 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc1.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.hOc1.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc1.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.hOc1.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3667 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3667 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 573 Checking for and removing duplicates Writing label file ./rh.hOc1.mpm.vpnl.label 4240 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:55 mri_label2label N 12 e 3.79 S 0.31 U 3.46 P 99% M 495684 F 0 R 142894 W 0 c 6 w 43 I 0 O 304 L 5.40 6.61 9.32 @#@FSLOADPOST 2022:04:18:07:21:58 mri_label2label N 12 5.29 6.57 9.29 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc2.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.hOc2.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc2.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.hOc2.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2719 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2719 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 449 Checking for and removing duplicates Writing label file ./rh.hOc2.mpm.vpnl.label 3168 mri_label2label: Done @#@FSTIME 2022:04:18:07:21:58 mri_label2label N 12 e 3.78 S 0.27 U 3.50 P 99% M 495680 F 0 R 142881 W 0 c 4 w 40 I 0 O 232 L 5.29 6.57 9.29 @#@FSLOADPOST 2022:04:18:07:22:02 mri_label2label N 12 5.26 6.54 9.27 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc3v.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.hOc3v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc3v.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.hOc3v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1228 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1228 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 128 Checking for and removing duplicates Writing label file ./rh.hOc3v.mpm.vpnl.label 1356 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:02 mri_label2label N 12 e 3.67 S 0.26 U 3.40 P 99% M 495424 F 0 R 145613 W 0 c 4 w 29 I 0 O 96 L 5.26 6.54 9.27 @#@FSLOADPOST 2022:04:18:07:22:06 mri_label2label N 12 5.26 6.54 9.27 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc4v.mpm.vpnl.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.hOc4v.mpm.vpnl.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.hOc4v.mpm.vpnl.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.hOc4v.mpm.vpnl.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 99 Checking for and removing duplicates Writing label file ./rh.hOc4v.mpm.vpnl.label 1124 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:06 mri_label2label N 12 e 3.71 S 0.25 U 3.46 P 99% M 495204 F 0 R 142835 W 0 c 6 w 30 I 0 O 80 L 5.26 6.54 9.27 @#@FSLOADPOST 2022:04:18:07:22:10 mri_label2label N 12 5.16 6.50 9.24 mris_label2annot --s MOD1707_Y2_a_fs7p2 --ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt Number of ctab entries 9 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --ctab /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt --hemi rh --a mpm.vpnl --maxstatwinner --noverbose --l rh.FG1.mpm.vpnl.label --l rh.FG2.mpm.vpnl.label --l rh.FG3.mpm.vpnl.label --l rh.FG4.mpm.vpnl.label --l rh.hOc1.mpm.vpnl.label --l rh.hOc2.mpm.vpnl.label --l rh.hOc3v.mpm.vpnl.label --l rh.hOc4v.mpm.vpnl.label sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi rh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_vpnl.txt AnnotName mpm.vpnl nlables 8 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig 1 1376057 FG1 2 16711935 FG2 3 16711680 FG3 4 1705837 FG4 5 25600 hOc1 6 255 hOc2 7 16776960 hOc3v 8 65535 hOc4v Mapping unhit to unknown Found 96773 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.mpm.vpnl.annot @#@FSTIME 2022:04:18:07:22:10 mris_label2annot N 26 e 0.61 S 0.05 U 0.51 P 92% M 127348 F 0 R 34398 W 0 c 2 w 159 I 0 O 1696 L 5.16 6.50 9.24 @#@FSLOADPOST 2022:04:18:07:22:10 mris_label2annot N 26 5.16 6.50 9.24 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 20 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 896 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:10 mri_label2label N 12 e 3.57 S 0.23 U 3.34 P 99% M 495276 F 0 R 142831 W 0 c 6 w 28 I 0 O 48 L 5.16 6.50 9.24 @#@FSLOADPOST 2022:04:18:07:22:14 mri_label2label N 12 5.07 6.46 9.21 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 26 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2714 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:14 mri_label2label N 12 e 3.71 S 0.29 U 3.41 P 99% M 495364 F 0 R 142861 W 0 c 6 w 33 I 0 O 128 L 5.07 6.46 9.21 @#@FSLOADPOST 2022:04:18:07:22:18 mri_label2label N 12 4.98 6.42 9.19 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 3 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1701 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:18 mri_label2label N 12 e 3.63 S 0.27 U 3.35 P 99% M 495264 F 0 R 142841 W 0 c 4 w 29 I 0 O 80 L 4.98 6.42 9.19 @#@FSLOADPOST 2022:04:18:07:22:21 mri_label2label N 12 4.98 6.39 9.16 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 8 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2191 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:21 mri_label2label N 12 e 3.66 S 0.24 U 3.41 P 99% M 495396 F 0 R 142851 W 0 c 6 w 31 I 0 O 104 L 4.98 6.39 9.16 @#@FSLOADPOST 2022:04:18:07:22:25 mri_label2label N 12 4.98 6.39 9.16 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 3 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1391 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:25 mri_label2label N 12 e 3.78 S 0.29 U 3.49 P 99% M 495484 F 0 R 142849 W 0 c 5 w 33 I 0 O 64 L 4.98 6.39 9.16 @#@FSLOADPOST 2022:04:18:07:22:29 mri_label2label N 12 4.90 6.35 9.14 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 2 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1491 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:29 mri_label2label N 12 e 3.61 S 0.26 U 3.35 P 99% M 495480 F 0 R 142847 W 0 c 5 w 30 I 0 O 72 L 4.90 6.35 9.14 @#@FSLOADPOST 2022:04:18:07:22:33 mri_label2label N 12 4.83 6.31 9.11 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 76 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 7035 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:33 mri_label2label N 12 e 4.32 S 0.25 U 4.06 P 99% M 495880 F 0 R 142949 W 0 c 7 w 44 I 0 O 320 L 4.83 6.31 9.11 @#@FSLOADPOST 2022:04:18:07:22:37 mri_label2label N 12 4.76 6.28 9.08 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 30 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1042 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:37 mri_label2label N 12 e 3.56 S 0.29 U 3.26 P 99% M 495276 F 0 R 142833 W 0 c 6 w 29 I 0 O 64 L 4.76 6.28 9.08 @#@FSLOADPOST 2022:04:18:07:22:41 mri_label2label N 12 4.76 6.28 9.08 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 10 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1188 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:41 mri_label2label N 12 e 3.61 S 0.28 U 3.32 P 99% M 495380 F 0 R 142834 W 0 c 5 w 33 I 0 O 64 L 4.76 6.28 9.08 @#@FSLOADPOST 2022:04:18:07:22:44 mri_label2label N 12 4.70 6.24 9.05 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 514 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 3746 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:44 mri_label2label N 12 e 3.80 S 0.29 U 3.51 P 99% M 495640 F 0 R 142880 W 0 c 5 w 40 I 0 O 272 L 4.70 6.24 9.05 @#@FSLOADPOST 2022:04:18:07:22:48 mri_label2label N 12 4.65 6.20 9.02 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 492 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 3929 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:48 mri_label2label N 12 e 3.77 S 0.29 U 3.47 P 99% M 495636 F 0 R 142884 W 0 c 6 w 43 I 0 O 280 L 4.65 6.20 9.02 @#@FSLOADPOST 2022:04:18:07:22:52 mri_label2label N 12 4.59 6.16 9.00 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 14 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 282 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:52 mri_label2label N 12 e 3.38 S 0.29 U 3.08 P 99% M 495352 F 0 R 145599 W 0 c 5 w 25 I 0 O 24 L 4.59 6.16 9.00 @#@FSLOADPOST 2022:04:18:07:22:55 mri_label2label N 12 4.59 6.16 9.00 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 3 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 697 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:55 mri_label2label N 12 e 3.63 S 0.25 U 3.37 P 99% M 495200 F 0 R 142824 W 0 c 9 w 27 I 0 O 40 L 4.59 6.16 9.00 @#@FSLOADPOST 2022:04:18:07:22:59 mri_label2label N 12 4.55 6.13 8.97 mri_label2label --srcsubject fsaverage --srclabel /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject MOD1707_Y2_a_fs7p2 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = MOD1707_Y2_a_fs7p2 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white Reading target registration /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 108160 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 291 mri_label2label: Done @#@FSTIME 2022:04:18:07:22:59 mri_label2label N 12 e 3.54 S 0.23 U 3.30 P 99% M 495436 F 0 R 142826 W 0 c 5 w 29 I 0 O 16 L 4.55 6.13 8.97 @#@FSLOADPOST 2022:04:18:07:23:03 mri_label2label N 12 4.50 6.09 8.94 mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi rh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi rh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.perirhinal_exvivo.label --l rh.entorhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi rh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 76708 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.BA_exvivo.annot @#@FSTIME 2022:04:18:07:23:03 mris_label2annot N 38 e 0.74 S 0.09 U 0.50 P 80% M 127728 F 0 R 34532 W 0 c 1 w 226 I 0 O 1696 L 4.50 6.09 8.94 @#@FSLOADPOST 2022:04:18:07:23:04 mris_label2annot N 38 4.50 6.09 8.94 mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi rh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt Number of ctab entries 15 7.2.0 cwd /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label cmdline mris_label2annot --s MOD1707_Y2_a_fs7p2 --hemi rh --ctab /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname hopper machine x86_64 user dustj subject MOD1707_Y2_a_fs7p2 hemi rh SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn ColorTable /usr/local/pkg/freesurfer7.2/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 90345 unhit vertices Writing annot to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/label/rh.BA_exvivo.thresh.annot @#@FSTIME 2022:04:18:07:23:04 mris_label2annot N 38 e 0.59 S 0.06 U 0.50 P 95% M 127484 F 0 R 34479 W 0 c 3 w 224 I 0 O 1696 L 4.50 6.09 8.94 @#@FSLOADPOST 2022:04:18:07:23:04 mris_label2annot N 38 4.50 6.09 8.94 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab MOD1707_Y2_a_fs7p2 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 715 493 1799 2.629 0.667 0.168 0.044 18 1.4 BA1_exvivo 2622 1770 4486 2.248 0.570 0.108 0.026 29 2.9 BA2_exvivo 902 570 906 2.011 0.448 0.110 0.025 5 1.0 BA3a_exvivo 1605 1056 2350 1.909 0.532 0.092 0.022 13 1.6 BA3b_exvivo 1074 750 2830 3.027 0.465 0.106 0.021 10 0.9 BA4a_exvivo 966 607 1720 2.670 0.528 0.083 0.016 6 0.7 BA4p_exvivo 6081 4188 17162 3.075 0.813 0.118 0.027 72 6.8 BA6_exvivo 2835 1948 7146 2.895 0.690 0.110 0.022 29 2.6 BA44_exvivo 3236 2306 10035 3.024 0.796 0.127 0.028 43 3.7 BA45_exvivo 3281 2349 6050 2.278 0.631 0.137 0.038 52 4.8 V1_exvivo 6003 4418 12932 2.463 0.674 0.147 0.039 107 9.6 V2_exvivo 1468 994 2966 2.434 0.716 0.113 0.022 18 1.4 MT_exvivo 258 161 639 3.263 0.812 0.086 0.020 2 0.1 perirhinal_exvivo 406 294 1250 3.078 1.294 0.151 0.045 8 0.8 entorhinal_exvivo @#@FSTIME 2022:04:18:07:23:04 mris_anatomical_stats N 12 e 3.67 S 0.22 U 3.43 P 99% M 399376 F 0 R 114745 W 0 c 7 w 97 I 0 O 136 L 4.50 6.09 8.94 @#@FSLOADPOST 2022:04:18:07:23:08 mris_anatomical_stats N 12 4.54 6.07 8.92 mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab MOD1707_Y2_a_fs7p2 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/mri/wm.mgz... reading input surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... reading input pial surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.pial... reading input white surface /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 260952 Total vertex volume 260763 (mask=0) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1265095 mm^3 (det: 1.539889 ) 485 336 1203 2.511 0.674 0.156 0.043 10 1.0 BA1_exvivo 1463 1015 2850 2.291 0.640 0.116 0.032 21 1.7 BA2_exvivo 807 505 702 1.913 0.356 0.110 0.020 5 0.8 BA3a_exvivo 1200 783 1470 1.805 0.427 0.072 0.012 4 0.7 BA3b_exvivo 694 483 1884 3.120 0.489 0.116 0.023 8 0.6 BA4a_exvivo 806 510 1315 2.629 0.443 0.077 0.015 3 0.5 BA4p_exvivo 3879 2655 10463 3.019 0.781 0.121 0.029 46 4.5 BA6_exvivo 689 487 2080 2.981 0.763 0.126 0.026 9 0.8 BA44_exvivo 722 535 2491 3.177 0.721 0.131 0.030 11 0.8 BA45_exvivo 3142 2202 5543 2.268 0.624 0.135 0.037 49 4.7 V1_exvivo 3276 2551 8080 2.494 0.674 0.157 0.046 71 6.0 V2_exvivo 236 163 354 1.990 0.374 0.074 0.008 1 0.1 MT_exvivo 19 12 34 2.980 0.531 0.053 0.006 0 0.0 perirhinal_exvivo 397 271 1227 3.412 0.802 0.129 0.031 6 0.6 entorhinal_exvivo @#@FSTIME 2022:04:18:07:23:08 mris_anatomical_stats N 12 e 3.66 S 0.20 U 3.43 P 99% M 399232 F 0 R 111967 W 0 c 7 w 94 I 0 O 136 L 4.54 6.07 8.92 @#@FSLOADPOST 2022:04:18:07:23:12 mris_anatomical_stats N 12 4.50 6.04 8.90 Started at Sun Apr 17 23:16:48 CDT 2022 Ended at Mon Apr 18 07:23:12 CDT 2022 #@#%# recon-all-run-time-hours 8.107 recon-all -s MOD1707_Y2_a_fs7p2 finished without error at Mon Apr 18 07:23:12 CDT 2022 New invocation of recon-all Fri Jun 17 16:59:30 CDT 2022 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2 /usr/local/pkg/freesurfer6.0/bin/recon-all -s MOD1707_Y2_a_fs7p2 -localGI subjid MOD1707_Y2_a_fs7p2 setenv SUBJECTS_DIR /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn FREESURFER_HOME /usr/local/pkg/freesurfer7.2 Actual FREESURFER_HOME /usr/local/pkg/freesurfer7.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b Linux hopper 5.3.0-40-generic #32~18.04.1-Ubuntu SMP Mon Feb 3 14:05:59 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 16384 kbytes maxproc 3090478 maxlocks unlimited maxsignal 3090478 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 791231820 5946792 101202920 6160 684082108 780360384 Swap: 40037372 6656 40030716 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Apr 17 2019 11:50:26 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:30-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:31-GMT BuildTimeStamp: Apr 17 2019 11:50:26 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2022/06/17-21:59:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: lathama Machine: hopper Platform: Linux PlatformVersion: 5.3.0-40-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /usr/local/pkg/freesurfer7.2/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /usr/local/pkg/freesurfer7.2/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf #-------------------------------------------- #@# Local Gyrification Index lh Fri Jun 17 16:59:31 CDT 2022 mris_compute_lgi --i lh.pial ================= rm -Rf /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mkdir -p /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial ================= ================= mris_fill -c -r 1 lh.pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz ================= reading surface from lh.pial... writing filled volume to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz',15,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ================= counting number of connected components... 55660 voxel in cpt #1: X=2 [v=55660,e=166974,f=111316] located at (-24.898626, -0.327816, -0.632932) For the whole surface: X=2 [v=55660,e=166974,f=111316] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main ./lh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./lh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 55660 - 166974 + 111316 = 2 --> 0 holes F =2V-4: 111316 = 111320-4 (0) 2E=3F: 333948 = 333948 (0) total defect index = 0 ================= mris_convert -n lh.pial-outer-smoothed /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_12415_.m'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 21.1200 ================= make_roi_paths('lh.pial','lh.pial-outer-smoothed',25,100,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrp_12415_.m'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 111316 face 10000 / 111316 face 15000 / 111316 face 20000 / 111316 face 25000 / 111316 face 30000 / 111316 face 35000 / 111316 face 40000 / 111316 face 45000 / 111316 face 50000 / 111316 face 55000 / 111316 face 60000 / 111316 face 65000 / 111316 face 70000 / 111316 face 75000 / 111316 face 80000 / 111316 face 85000 / 111316 face 90000 / 111316 face 95000 / 111316 face 100000 / 111316 face 105000 / 111316 face 110000 / 111316 mesh_outer = vertices: [55660x3 double] faces: [111316x3 double] facesOfVertex: [55660x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (104.71 sec). ... creating path file for vertex 1 / 55660 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 55660 ... creating path file for vertex 201 / 55660 ... creating path file for vertex 301 / 55660 ... creating path file for vertex 401 / 55660 ... creating path file for vertex 501 / 55660 ... creating path file for vertex 601 / 55660 ... creating path file for vertex 701 / 55660 ... creating path file for vertex 801 / 55660 ... creating path file for vertex 901 / 55660 ... creating path file for vertex 1001 / 55660 ... creating path file for vertex 1101 / 55660 ... creating path file for vertex 1201 / 55660 ... creating path file for vertex 1301 / 55660 ... creating path file for vertex 1401 / 55660 ... creating path file for vertex 1501 / 55660 ... creating path file for vertex 1601 / 55660 ... creating path file for vertex 1701 / 55660 ... creating path file for vertex 1801 / 55660 ... creating path file for vertex 1901 / 55660 ... creating path file for vertex 2001 / 55660 ... creating path file for vertex 2101 / 55660 ... creating path file for vertex 2201 / 55660 ... creating path file for vertex 2301 / 55660 ... creating path file for vertex 2401 / 55660 ... creating path file for vertex 2501 / 55660 ... creating path file for vertex 2601 / 55660 ... creating path file for vertex 2701 / 55660 ... creating path file for vertex 2801 / 55660 ... creating path file for vertex 2901 / 55660 ... creating path file for vertex 3001 / 55660 ... creating path file for vertex 3101 / 55660 ... creating path file for vertex 3201 / 55660 ... creating path file for vertex 3301 / 55660 ... creating path file for vertex 3401 / 55660 ... creating path file for vertex 3501 / 55660 ... creating path file for vertex 3601 / 55660 ... creating path file for vertex 3701 / 55660 ... creating path file for vertex 3801 / 55660 ... creating path file for vertex 3901 / 55660 ... creating path file for vertex 4001 / 55660 ... creating path file for vertex 4101 / 55660 ... creating path file for vertex 4201 / 55660 ... creating path file for vertex 4301 / 55660 ... creating path file for vertex 4401 / 55660 ... creating path file for vertex 4501 / 55660 ... creating path file for vertex 4601 / 55660 ... creating path file for vertex 4701 / 55660 ... creating path file for vertex 4801 / 55660 ... creating path file for vertex 4901 / 55660 ... creating path file for vertex 5001 / 55660 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 55660 ... creating path file for vertex 5201 / 55660 ... creating path file for vertex 5301 / 55660 ... creating path file for vertex 5401 / 55660 ... creating path file for vertex 5501 / 55660 ... creating path file for vertex 5601 / 55660 ... creating path file for vertex 5701 / 55660 ... creating path file for vertex 5801 / 55660 ... creating path file for vertex 5901 / 55660 ... creating path file for vertex 6001 / 55660 ... creating path file for vertex 6101 / 55660 ... creating path file for vertex 6201 / 55660 ... creating path file for vertex 6301 / 55660 ... creating path file for vertex 6401 / 55660 ... creating path file for vertex 6501 / 55660 ... creating path file for vertex 6601 / 55660 ... creating path file for vertex 6701 / 55660 ... creating path file for vertex 6801 / 55660 ... creating path file for vertex 6901 / 55660 ... creating path file for vertex 7001 / 55660 ... creating path file for vertex 7101 / 55660 ... creating path file for vertex 7201 / 55660 ... creating path file for vertex 7301 / 55660 ... creating path file for vertex 7401 / 55660 ... creating path file for vertex 7501 / 55660 ... creating path file for vertex 7601 / 55660 ... creating path file for vertex 7701 / 55660 ... creating path file for vertex 7801 / 55660 ... creating path file for vertex 7901 / 55660 ... creating path file for vertex 8001 / 55660 ... creating path file for vertex 8101 / 55660 ... creating path file for vertex 8201 / 55660 ... creating path file for vertex 8301 / 55660 ... creating path file for vertex 8401 / 55660 ... creating path file for vertex 8501 / 55660 ... creating path file for vertex 8601 / 55660 ... creating path file for vertex 8701 / 55660 ... creating path file for vertex 8801 / 55660 ... creating path file for vertex 8901 / 55660 ... creating path file for vertex 9001 / 55660 ... creating path file for vertex 9101 / 55660 ... creating path file for vertex 9201 / 55660 ... creating path file for vertex 9301 / 55660 ... creating path file for vertex 9401 / 55660 ... creating path file for vertex 9501 / 55660 ... creating path file for vertex 9601 / 55660 ... creating path file for vertex 9701 / 55660 ... creating path file for vertex 9801 / 55660 ... creating path file for vertex 9901 / 55660 ... creating path file for vertex 10001 / 55660 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 55660 ... creating path file for vertex 10201 / 55660 ... creating path file for vertex 10301 / 55660 ... creating path file for vertex 10401 / 55660 ... creating path file for vertex 10501 / 55660 ... creating path file for vertex 10601 / 55660 ... creating path file for vertex 10701 / 55660 ... creating path file for vertex 10801 / 55660 ... creating path file for vertex 10901 / 55660 ... creating path file for vertex 11001 / 55660 ... creating path file for vertex 11101 / 55660 ... creating path file for vertex 11201 / 55660 ... creating path file for vertex 11301 / 55660 ... creating path file for vertex 11401 / 55660 ... creating path file for vertex 11501 / 55660 ... creating path file for vertex 11601 / 55660 ... creating path file for vertex 11701 / 55660 ... creating path file for vertex 11801 / 55660 ... creating path file for vertex 11901 / 55660 ... creating path file for vertex 12001 / 55660 ... creating path file for vertex 12101 / 55660 ... creating path file for vertex 12201 / 55660 ... creating path file for vertex 12301 / 55660 ... creating path file for vertex 12401 / 55660 ... creating path file for vertex 12501 / 55660 ... creating path file for vertex 12601 / 55660 ... creating path file for vertex 12701 / 55660 ... creating path file for vertex 12801 / 55660 ... creating path file for vertex 12901 / 55660 ... creating path file for vertex 13001 / 55660 ... creating path file for vertex 13101 / 55660 ... creating path file for vertex 13201 / 55660 ... creating path file for vertex 13301 / 55660 ... creating path file for vertex 13401 / 55660 ... creating path file for vertex 13501 / 55660 ... creating path file for vertex 13601 / 55660 ... creating path file for vertex 13701 / 55660 ... creating path file for vertex 13801 / 55660 ... creating path file for vertex 13901 / 55660 ... creating path file for vertex 14001 / 55660 non geodesic regions removed from the patch ... creating path file for vertex 14101 / 55660 ... creating path file for vertex 14201 / 55660 ... creating path file for vertex 14301 / 55660 ... creating path file for vertex 14401 / 55660 ... creating path file for vertex 14501 / 55660 ... creating path file for vertex 14601 / 55660 ... creating path file for vertex 14701 / 55660 ... creating path file for vertex 14801 / 55660 ... creating path file for vertex 14901 / 55660 ... creating path file for vertex 15001 / 55660 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 55660 ... creating path file for vertex 15201 / 55660 ... creating path file for vertex 15301 / 55660 ... creating path file for vertex 15401 / 55660 ... creating path file for vertex 15501 / 55660 ... creating path file for vertex 15601 / 55660 ... creating path file for vertex 15701 / 55660 ... creating path file for vertex 15801 / 55660 ... creating path file for vertex 15901 / 55660 ... creating path file for vertex 16001 / 55660 ... creating path file for vertex 16101 / 55660 ... creating path file for vertex 16201 / 55660 ... creating path file for vertex 16301 / 55660 ... creating path file for vertex 16401 / 55660 ... creating path file for vertex 16501 / 55660 ... creating path file for vertex 16601 / 55660 ... creating path file for vertex 16701 / 55660 ... creating path file for vertex 16801 / 55660 ... creating path file for vertex 16901 / 55660 ... creating path file for vertex 17001 / 55660 ... creating path file for vertex 17101 / 55660 ... creating path file for vertex 17201 / 55660 ... creating path file for vertex 17301 / 55660 ... creating path file for vertex 17401 / 55660 ... creating path file for vertex 17501 / 55660 ... creating path file for vertex 17601 / 55660 ... creating path file for vertex 17701 / 55660 ... creating path file for vertex 17801 / 55660 ... creating path file for vertex 17901 / 55660 ... creating path file for vertex 18001 / 55660 ... creating path file for vertex 18101 / 55660 ... creating path file for vertex 18201 / 55660 ... creating path file for vertex 18301 / 55660 ... creating path file for vertex 18401 / 55660 ... creating path file for vertex 18501 / 55660 ... creating path file for vertex 18601 / 55660 ... creating path file for vertex 18701 / 55660 ... creating path file for vertex 18801 / 55660 ... creating path file for vertex 18901 / 55660 ... creating path file for vertex 19001 / 55660 ... creating path file for vertex 19101 / 55660 ... creating path file for vertex 19201 / 55660 ... creating path file for vertex 19301 / 55660 ... creating path file for vertex 19401 / 55660 ... creating path file for vertex 19501 / 55660 ... creating path file for vertex 19601 / 55660 ... creating path file for vertex 19701 / 55660 ... creating path file for vertex 19801 / 55660 ... creating path file for vertex 19901 / 55660 ... creating path file for vertex 20001 / 55660 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 55660 ... creating path file for vertex 20201 / 55660 ... creating path file for vertex 20301 / 55660 ... creating path file for vertex 20401 / 55660 ... creating path file for vertex 20501 / 55660 ... creating path file for vertex 20601 / 55660 ... creating path file for vertex 20701 / 55660 ... creating path file for vertex 20801 / 55660 ... creating path file for vertex 20901 / 55660 ... creating path file for vertex 21001 / 55660 ... creating path file for vertex 21101 / 55660 ... creating path file for vertex 21201 / 55660 ... creating path file for vertex 21301 / 55660 ... creating path file for vertex 21401 / 55660 ... creating path file for vertex 21501 / 55660 ... creating path file for vertex 21601 / 55660 ... creating path file for vertex 21701 / 55660 ... creating path file for vertex 21801 / 55660 ... creating path file for vertex 21901 / 55660 ... creating path file for vertex 22001 / 55660 ... creating path file for vertex 22101 / 55660 ... creating path file for vertex 22201 / 55660 ... creating path file for vertex 22301 / 55660 ... creating path file for vertex 22401 / 55660 ... creating path file for vertex 22501 / 55660 ... creating path file for vertex 22601 / 55660 ... creating path file for vertex 22701 / 55660 ... creating path file for vertex 22801 / 55660 ... creating path file for vertex 22901 / 55660 ... creating path file for vertex 23001 / 55660 ... creating path file for vertex 23101 / 55660 ... creating path file for vertex 23201 / 55660 ... creating path file for vertex 23301 / 55660 ... creating path file for vertex 23401 / 55660 ... creating path file for vertex 23501 / 55660 ... creating path file for vertex 23601 / 55660 ... creating path file for vertex 23701 / 55660 ... creating path file for vertex 23801 / 55660 ... creating path file for vertex 23901 / 55660 ... creating path file for vertex 24001 / 55660 ... creating path file for vertex 24101 / 55660 ... creating path file for vertex 24201 / 55660 ... creating path file for vertex 24301 / 55660 ... creating path file for vertex 24401 / 55660 ... creating path file for vertex 24501 / 55660 ... creating path file for vertex 24601 / 55660 ... creating path file for vertex 24701 / 55660 ... creating path file for vertex 24801 / 55660 ... creating path file for vertex 24901 / 55660 ... creating path file for vertex 25001 / 55660 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 55660 ... creating path file for vertex 25201 / 55660 ... creating path file for vertex 25301 / 55660 ... creating path file for vertex 25401 / 55660 ... creating path file for vertex 25501 / 55660 ... creating path file for vertex 25601 / 55660 ... creating path file for vertex 25701 / 55660 ... creating path file for vertex 25801 / 55660 ... creating path file for vertex 25901 / 55660 ... creating path file for vertex 26001 / 55660 ... creating path file for vertex 26101 / 55660 ... creating path file for vertex 26201 / 55660 ... creating path file for vertex 26301 / 55660 ... creating path file for vertex 26401 / 55660 ... creating path file for vertex 26501 / 55660 ... creating path file for vertex 26601 / 55660 ... creating path file for vertex 26701 / 55660 ... creating path file for vertex 26801 / 55660 ... creating path file for vertex 26901 / 55660 ... creating path file for vertex 27001 / 55660 ... creating path file for vertex 27101 / 55660 ... creating path file for vertex 27201 / 55660 ... creating path file for vertex 27301 / 55660 ... creating path file for vertex 27401 / 55660 ... creating path file for vertex 27501 / 55660 ... creating path file for vertex 27601 / 55660 ... creating path file for vertex 27701 / 55660 ... creating path file for vertex 27801 / 55660 ... creating path file for vertex 27901 / 55660 ... creating path file for vertex 28001 / 55660 ... creating path file for vertex 28101 / 55660 ... creating path file for vertex 28201 / 55660 ... creating path file for vertex 28301 / 55660 ... creating path file for vertex 28401 / 55660 ... creating path file for vertex 28501 / 55660 ... creating path file for vertex 28601 / 55660 ... creating path file for vertex 28701 / 55660 ... creating path file for vertex 28801 / 55660 ... creating path file for vertex 28901 / 55660 ... creating path file for vertex 29001 / 55660 ... creating path file for vertex 29101 / 55660 ... creating path file for vertex 29201 / 55660 ... creating path file for vertex 29301 / 55660 ... creating path file for vertex 29401 / 55660 ... creating path file for vertex 29501 / 55660 ... creating path file for vertex 29601 / 55660 ... creating path file for vertex 29701 / 55660 ... creating path file for vertex 29801 / 55660 ... creating path file for vertex 29901 / 55660 ... creating path file for vertex 30001 / 55660 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 55660 ... creating path file for vertex 30201 / 55660 ... creating path file for vertex 30301 / 55660 ... creating path file for vertex 30401 / 55660 ... creating path file for vertex 30501 / 55660 ... creating path file for vertex 30601 / 55660 ... creating path file for vertex 30701 / 55660 ... creating path file for vertex 30801 / 55660 ... creating path file for vertex 30901 / 55660 ... creating path file for vertex 31001 / 55660 ... creating path file for vertex 31101 / 55660 ... creating path file for vertex 31201 / 55660 ... creating path file for vertex 31301 / 55660 ... creating path file for vertex 31401 / 55660 ... creating path file for vertex 31501 / 55660 ... creating path file for vertex 31601 / 55660 ... creating path file for vertex 31701 / 55660 ... creating path file for vertex 31801 / 55660 ... creating path file for vertex 31901 / 55660 ... creating path file for vertex 32001 / 55660 ... creating path file for vertex 32101 / 55660 ... creating path file for vertex 32201 / 55660 ... creating path file for vertex 32301 / 55660 ... creating path file for vertex 32401 / 55660 ... creating path file for vertex 32501 / 55660 ... creating path file for vertex 32601 / 55660 ... creating path file for vertex 32701 / 55660 ... creating path file for vertex 32801 / 55660 ... creating path file for vertex 32901 / 55660 ... creating path file for vertex 33001 / 55660 ... creating path file for vertex 33101 / 55660 ... creating path file for vertex 33201 / 55660 ... creating path file for vertex 33301 / 55660 ... creating path file for vertex 33401 / 55660 ... creating path file for vertex 33501 / 55660 ... creating path file for vertex 33601 / 55660 ... creating path file for vertex 33701 / 55660 ... creating path file for vertex 33801 / 55660 ... creating path file for vertex 33901 / 55660 ... creating path file for vertex 34001 / 55660 ... creating path file for vertex 34101 / 55660 ... creating path file for vertex 34201 / 55660 ... creating path file for vertex 34301 / 55660 ... creating path file for vertex 34401 / 55660 ... creating path file for vertex 34501 / 55660 ... creating path file for vertex 34601 / 55660 ... creating path file for vertex 34701 / 55660 ... creating path file for vertex 34801 / 55660 ... creating path file for vertex 34901 / 55660 ... creating path file for vertex 35001 / 55660 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 55660 ... creating path file for vertex 35201 / 55660 ... creating path file for vertex 35301 / 55660 ... creating path file for vertex 35401 / 55660 ... creating path file for vertex 35501 / 55660 ... creating path file for vertex 35601 / 55660 ... creating path file for vertex 35701 / 55660 ... creating path file for vertex 35801 / 55660 ... creating path file for vertex 35901 / 55660 ... creating path file for vertex 36001 / 55660 ... creating path file for vertex 36101 / 55660 ... creating path file for vertex 36201 / 55660 ... creating path file for vertex 36301 / 55660 ... creating path file for vertex 36401 / 55660 ... creating path file for vertex 36501 / 55660 ... creating path file for vertex 36601 / 55660 ... creating path file for vertex 36701 / 55660 ... creating path file for vertex 36801 / 55660 ... creating path file for vertex 36901 / 55660 ... creating path file for vertex 37001 / 55660 ... creating path file for vertex 37101 / 55660 ... creating path file for vertex 37201 / 55660 ... creating path file for vertex 37301 / 55660 ... creating path file for vertex 37401 / 55660 ... creating path file for vertex 37501 / 55660 ... creating path file for vertex 37601 / 55660 ... creating path file for vertex 37701 / 55660 ... creating path file for vertex 37801 / 55660 ... creating path file for vertex 37901 / 55660 ... creating path file for vertex 38001 / 55660 ... creating path file for vertex 38101 / 55660 ... creating path file for vertex 38201 / 55660 ... creating path file for vertex 38301 / 55660 ... creating path file for vertex 38401 / 55660 ... creating path file for vertex 38501 / 55660 ... creating path file for vertex 38601 / 55660 ... creating path file for vertex 38701 / 55660 ... creating path file for vertex 38801 / 55660 ... creating path file for vertex 38901 / 55660 ... creating path file for vertex 39001 / 55660 ... creating path file for vertex 39101 / 55660 ... creating path file for vertex 39201 / 55660 ... creating path file for vertex 39301 / 55660 ... creating path file for vertex 39401 / 55660 ... creating path file for vertex 39501 / 55660 ... creating path file for vertex 39601 / 55660 ... creating path file for vertex 39701 / 55660 ... creating path file for vertex 39801 / 55660 ... creating path file for vertex 39901 / 55660 ... creating path file for vertex 40001 / 55660 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 55660 ... creating path file for vertex 40201 / 55660 ... creating path file for vertex 40301 / 55660 ... creating path file for vertex 40401 / 55660 ... creating path file for vertex 40501 / 55660 ... creating path file for vertex 40601 / 55660 ... creating path file for vertex 40701 / 55660 ... creating path file for vertex 40801 / 55660 ... creating path file for vertex 40901 / 55660 ... creating path file for vertex 41001 / 55660 ... creating path file for vertex 41101 / 55660 ... creating path file for vertex 41201 / 55660 ... creating path file for vertex 41301 / 55660 ... creating path file for vertex 41401 / 55660 ... creating path file for vertex 41501 / 55660 ... creating path file for vertex 41601 / 55660 ... creating path file for vertex 41701 / 55660 ... creating path file for vertex 41801 / 55660 ... creating path file for vertex 41901 / 55660 ... creating path file for vertex 42001 / 55660 ... creating path file for vertex 42101 / 55660 ... creating path file for vertex 42201 / 55660 ... creating path file for vertex 42301 / 55660 ... creating path file for vertex 42401 / 55660 ... creating path file for vertex 42501 / 55660 ... creating path file for vertex 42601 / 55660 ... creating path file for vertex 42701 / 55660 ... creating path file for vertex 42801 / 55660 ... creating path file for vertex 42901 / 55660 ... creating path file for vertex 43001 / 55660 ... creating path file for vertex 43101 / 55660 ... creating path file for vertex 43201 / 55660 ... creating path file for vertex 43301 / 55660 ... creating path file for vertex 43401 / 55660 non geodesic regions removed from the patch ... creating path file for vertex 43501 / 55660 ... creating path file for vertex 43601 / 55660 ... creating path file for vertex 43701 / 55660 ... creating path file for vertex 43801 / 55660 ... creating path file for vertex 43901 / 55660 ... creating path file for vertex 44001 / 55660 ... creating path file for vertex 44101 / 55660 ... creating path file for vertex 44201 / 55660 ... creating path file for vertex 44301 / 55660 ... creating path file for vertex 44401 / 55660 ... creating path file for vertex 44501 / 55660 ... creating path file for vertex 44601 / 55660 ... creating path file for vertex 44701 / 55660 ... creating path file for vertex 44801 / 55660 ... creating path file for vertex 44901 / 55660 ... creating path file for vertex 45001 / 55660 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 55660 non geodesic regions removed from the patch ... creating path file for vertex 45201 / 55660 ... creating path file for vertex 45301 / 55660 ... creating path file for vertex 45401 / 55660 ... creating path file for vertex 45501 / 55660 ... creating path file for vertex 45601 / 55660 ... creating path file for vertex 45701 / 55660 ... creating path file for vertex 45801 / 55660 ... creating path file for vertex 45901 / 55660 ... creating path file for vertex 46001 / 55660 ... creating path file for vertex 46101 / 55660 ... creating path file for vertex 46201 / 55660 ... creating path file for vertex 46301 / 55660 ... creating path file for vertex 46401 / 55660 ... creating path file for vertex 46501 / 55660 ... creating path file for vertex 46601 / 55660 ... creating path file for vertex 46701 / 55660 ... creating path file for vertex 46801 / 55660 ... creating path file for vertex 46901 / 55660 ... creating path file for vertex 47001 / 55660 ... creating path file for vertex 47101 / 55660 ... creating path file for vertex 47201 / 55660 ... creating path file for vertex 47301 / 55660 ... creating path file for vertex 47401 / 55660 ... creating path file for vertex 47501 / 55660 ... creating path file for vertex 47601 / 55660 ... creating path file for vertex 47701 / 55660 ... creating path file for vertex 47801 / 55660 ... creating path file for vertex 47901 / 55660 ... creating path file for vertex 48001 / 55660 ... creating path file for vertex 48101 / 55660 ... creating path file for vertex 48201 / 55660 ... creating path file for vertex 48301 / 55660 ... creating path file for vertex 48401 / 55660 ... creating path file for vertex 48501 / 55660 ... creating path file for vertex 48601 / 55660 ... creating path file for vertex 48701 / 55660 ... creating path file for vertex 48801 / 55660 ... creating path file for vertex 48901 / 55660 ... creating path file for vertex 49001 / 55660 ... creating path file for vertex 49101 / 55660 ... creating path file for vertex 49201 / 55660 ... creating path file for vertex 49301 / 55660 ... creating path file for vertex 49401 / 55660 ... creating path file for vertex 49501 / 55660 ... creating path file for vertex 49601 / 55660 ... creating path file for vertex 49701 / 55660 ... creating path file for vertex 49801 / 55660 ... creating path file for vertex 49901 / 55660 ... creating path file for vertex 50001 / 55660 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 55660 ... creating path file for vertex 50201 / 55660 ... creating path file for vertex 50301 / 55660 ... creating path file for vertex 50401 / 55660 ... creating path file for vertex 50501 / 55660 ... creating path file for vertex 50601 / 55660 ... creating path file for vertex 50701 / 55660 ... creating path file for vertex 50801 / 55660 ... creating path file for vertex 50901 / 55660 ... creating path file for vertex 51001 / 55660 ... creating path file for vertex 51101 / 55660 ... creating path file for vertex 51201 / 55660 ... creating path file for vertex 51301 / 55660 ... creating path file for vertex 51401 / 55660 ... creating path file for vertex 51501 / 55660 ... creating path file for vertex 51601 / 55660 ... creating path file for vertex 51701 / 55660 ... creating path file for vertex 51801 / 55660 ... creating path file for vertex 51901 / 55660 ... creating path file for vertex 52001 / 55660 ... creating path file for vertex 52101 / 55660 ... creating path file for vertex 52201 / 55660 ... creating path file for vertex 52301 / 55660 ... creating path file for vertex 52401 / 55660 ... creating path file for vertex 52501 / 55660 ... creating path file for vertex 52601 / 55660 ... creating path file for vertex 52701 / 55660 ... creating path file for vertex 52801 / 55660 ... creating path file for vertex 52901 / 55660 ... creating path file for vertex 53001 / 55660 ... creating path file for vertex 53101 / 55660 ... creating path file for vertex 53201 / 55660 ... creating path file for vertex 53301 / 55660 ... creating path file for vertex 53401 / 55660 ... creating path file for vertex 53501 / 55660 ... creating path file for vertex 53601 / 55660 ... creating path file for vertex 53701 / 55660 ... creating path file for vertex 53801 / 55660 ... creating path file for vertex 53901 / 55660 ... creating path file for vertex 54001 / 55660 ... creating path file for vertex 54101 / 55660 ... creating path file for vertex 54201 / 55660 ... creating path file for vertex 54301 / 55660 ... creating path file for vertex 54401 / 55660 ... creating path file for vertex 54501 / 55660 ... creating path file for vertex 54601 / 55660 ... creating path file for vertex 54701 / 55660 ... creating path file for vertex 54801 / 55660 ... creating path file for vertex 54901 / 55660 ... creating path file for vertex 55001 / 55660 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 55660 ... creating path file for vertex 55201 / 55660 ... creating path file for vertex 55301 / 55660 ... creating path file for vertex 55401 / 55660 ... creating path file for vertex 55501 / 55660 ... creating path file for vertex 55601 / 55660 saving area file in matlab format... DONE. deltaT = 1.7042e+03 ================= mri_path2label --confillxfn lh.pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input ================= Reading lh.pial Connecting and filling vertices in path at fillseed 173 Finding path....................................................................................................................................................................................................... done Filling 173 nlabel 5655 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000001.label Connecting and filling vertices in path at fillseed 106 Finding path................................................................................................................................................................................................................................ done Filling 106 nlabel 5806 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000101.label Connecting and filling vertices in path at fillseed 44 Finding path............................................................................................................................................................................................................... done Filling 44 nlabel 5119 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000201.label Connecting and filling vertices in path at fillseed 131 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 131 nlabel 6781 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000301.label Connecting and filling vertices in path at fillseed 248 Finding path.............................................................................................................................................................................................................................. done Filling 248 nlabel 5988 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000401.label Connecting and filling vertices in path at fillseed 414 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 414 nlabel 8089 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000501.label Connecting and filling vertices in path at fillseed 303 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 303 nlabel 7920 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000601.label Connecting and filling vertices in path at fillseed 398 Finding path...................................................................................................................................................................................................... done Filling 398 nlabel 4799 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000701.label Connecting and filling vertices in path at fillseed 430 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 430 nlabel 7205 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000801.label Connecting and filling vertices in path at fillseed 322 Finding path................................................................................................................................................................................................................................................. done Filling 322 nlabel 6055 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.000901.label Connecting and filling vertices in path at fillseed 551 Finding path......................................................................................................................................................................................................... done Filling 551 nlabel 5675 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001001.label Connecting and filling vertices in path at fillseed 1330 Finding path..................................................................................................................................................... done Filling 1330 nlabel 5762 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001101.label Connecting and filling vertices in path at fillseed 896 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 896 nlabel 6446 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001201.label Connecting and filling vertices in path at fillseed 995 Finding path...................................................................................................................................................................... done Filling 995 nlabel 5769 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001301.label Connecting and filling vertices in path at fillseed 1337 Finding path.................................................................................................................................... done Filling 1337 nlabel 5526 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001401.label Connecting and filling vertices in path at fillseed 1064 Finding path...................................................................................................................................................... done Filling 1064 nlabel 4594 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001501.label Connecting and filling vertices in path at fillseed 1264 Finding path............................................................................................................................................................................. done Filling 1264 nlabel 5905 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001601.label Connecting and filling vertices in path at fillseed 95462 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 95462 nlabel 8142 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001701.label Connecting and filling vertices in path at fillseed 1068 Finding path....................................................................................................................................................... done Filling 1068 nlabel 4724 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001801.label Connecting and filling vertices in path at fillseed 1864 Finding path................................................................................................................................................................................. done Filling 1864 nlabel 5565 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.001901.label Connecting and filling vertices in path at fillseed 802 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 802 nlabel 7831 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002001.label Connecting and filling vertices in path at fillseed 886 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 886 nlabel 6971 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002101.label Connecting and filling vertices in path at fillseed 1893 Finding path............................................................................................................................................................................ done Filling 1893 nlabel 5191 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002201.label Connecting and filling vertices in path at fillseed 98992 Finding path............................................................................................................................................................................................ done Filling 98992 nlabel 6074 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002301.label Connecting and filling vertices in path at fillseed 1215 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 1215 nlabel 6840 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002401.label Connecting and filling vertices in path at fillseed 2269 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 2269 nlabel 8344 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002501.label Connecting and filling vertices in path at fillseed 4264 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 4264 nlabel 6093 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002601.label Connecting and filling vertices in path at fillseed 2359 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2359 nlabel 6628 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002701.label Connecting and filling vertices in path at fillseed 2957 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 2957 nlabel 8155 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002801.label Connecting and filling vertices in path at fillseed 2250 Finding path............................................................................................................................................................................................................................................. done Filling 2250 nlabel 5118 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.002901.label Connecting and filling vertices in path at fillseed 2580 Finding path......................................................................................................................................................................................................................... done Filling 2580 nlabel 6723 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003001.label Connecting and filling vertices in path at fillseed 95253 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 95253 nlabel 7609 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003101.label Connecting and filling vertices in path at fillseed 3941 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 3941 nlabel 6478 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003201.label Connecting and filling vertices in path at fillseed 4029 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4029 nlabel 8157 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003301.label Connecting and filling vertices in path at fillseed 2289 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2289 nlabel 8688 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003401.label Connecting and filling vertices in path at fillseed 2921 Finding path............................................................................................................................................................................. done Filling 2921 nlabel 5414 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003501.label Connecting and filling vertices in path at fillseed 2932 Finding path............................................................................................................................................................................................................... done Filling 2932 nlabel 6835 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003601.label Connecting and filling vertices in path at fillseed 3833 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3833 nlabel 7552 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003701.label Connecting and filling vertices in path at fillseed 92118 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 92118 nlabel 7555 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003801.label Connecting and filling vertices in path at fillseed 108474 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108474 nlabel 8745 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.003901.label Connecting and filling vertices in path at fillseed 4431 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4431 nlabel 7435 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004001.label Connecting and filling vertices in path at fillseed 92118 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 92118 nlabel 7838 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004101.label Connecting and filling vertices in path at fillseed 4920 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 4920 nlabel 8629 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004201.label Connecting and filling vertices in path at fillseed 109004 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 109004 nlabel 7023 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004301.label Connecting and filling vertices in path at fillseed 5752 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 5752 nlabel 7590 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004401.label Connecting and filling vertices in path at fillseed 6590 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6590 nlabel 6525 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004501.label Connecting and filling vertices in path at fillseed 3649 Finding path................................................................................................................................................................................................... done Filling 3649 nlabel 6864 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004601.label Connecting and filling vertices in path at fillseed 4399 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 4399 nlabel 8769 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004701.label Connecting and filling vertices in path at fillseed 6163 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 6163 nlabel 7574 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004801.label Connecting and filling vertices in path at fillseed 6187 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6187 nlabel 7210 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.004901.label Connecting and filling vertices in path at fillseed 4760 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4760 nlabel 8836 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005001.label Connecting and filling vertices in path at fillseed 7000 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 7000 nlabel 7212 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005101.label Connecting and filling vertices in path at fillseed 4572 Finding path............................................................................................................................................................................................................ done Filling 4572 nlabel 5255 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005201.label Connecting and filling vertices in path at fillseed 96903 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 96903 nlabel 8758 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005301.label Connecting and filling vertices in path at fillseed 6369 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 6369 nlabel 9568 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005401.label Connecting and filling vertices in path at fillseed 4904 Finding path................................................................................................................................................................................................................................... done Filling 4904 nlabel 6390 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005501.label Connecting and filling vertices in path at fillseed 7113 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 7113 nlabel 8570 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005601.label Connecting and filling vertices in path at fillseed 6670 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6670 nlabel 9802 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005701.label Connecting and filling vertices in path at fillseed 8411 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 8411 nlabel 6542 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005801.label Connecting and filling vertices in path at fillseed 7488 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 7488 nlabel 8966 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.005901.label Connecting and filling vertices in path at fillseed 6780 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 6780 nlabel 9610 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006001.label Connecting and filling vertices in path at fillseed 8944 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 8944 nlabel 6872 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006101.label Connecting and filling vertices in path at fillseed 4906 Finding path.................................................................................................................................................................................................................................................. done Filling 4906 nlabel 7280 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006201.label Connecting and filling vertices in path at fillseed 94152 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 94152 nlabel 9172 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006301.label Connecting and filling vertices in path at fillseed 8947 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 8947 nlabel 6856 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006401.label Connecting and filling vertices in path at fillseed 105193 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105193 nlabel 7359 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006501.label Connecting and filling vertices in path at fillseed 8475 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 8475 nlabel 6963 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006601.label Connecting and filling vertices in path at fillseed 95936 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 95936 nlabel 9791 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006701.label Connecting and filling vertices in path at fillseed 5729 Finding path............................................................................................................................................................................................ done Filling 5729 nlabel 6782 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006801.label Connecting and filling vertices in path at fillseed 9980 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9980 nlabel 8388 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.006901.label Connecting and filling vertices in path at fillseed 7818 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 7818 nlabel 8078 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007001.label Connecting and filling vertices in path at fillseed 102240 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 102240 nlabel 8001 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007101.label Connecting and filling vertices in path at fillseed 10980 Finding path........................................................................................................................................................................................................................... done Filling 10980 nlabel 6892 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007201.label Connecting and filling vertices in path at fillseed 107764 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 107764 nlabel 7960 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007301.label Connecting and filling vertices in path at fillseed 9826 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 9826 nlabel 8677 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007401.label Connecting and filling vertices in path at fillseed 92652 Finding path................................................................................................................................................................................................................................................................. done Filling 92652 nlabel 7221 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007501.label Connecting and filling vertices in path at fillseed 7354 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 7354 nlabel 7929 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007601.label Connecting and filling vertices in path at fillseed 10217 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 10217 nlabel 9561 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007701.label Connecting and filling vertices in path at fillseed 91026 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91026 nlabel 7958 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007801.label Connecting and filling vertices in path at fillseed 105263 Finding path............................................................................................................................................................................................................................................... done Filling 105263 nlabel 6597 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.007901.label Connecting and filling vertices in path at fillseed 11256 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11256 nlabel 8397 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008001.label Connecting and filling vertices in path at fillseed 10247 Finding path.............................................................................................................................................................................................................................................................................. done Filling 10247 nlabel 8883 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008101.label Connecting and filling vertices in path at fillseed 10923 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10923 nlabel 7477 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008201.label Connecting and filling vertices in path at fillseed 10957 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 10957 nlabel 7742 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008301.label Connecting and filling vertices in path at fillseed 10989 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 10989 nlabel 5069 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008401.label Connecting and filling vertices in path at fillseed 92059 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92059 nlabel 6143 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008501.label Connecting and filling vertices in path at fillseed 12095 Finding path............................................................................................................................................................................................................................................................................................ done Filling 12095 nlabel 7553 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008601.label Connecting and filling vertices in path at fillseed 11211 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 11211 nlabel 6691 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008701.label Connecting and filling vertices in path at fillseed 14448 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 14448 nlabel 9522 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008801.label Connecting and filling vertices in path at fillseed 14278 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 14278 nlabel 5392 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.008901.label Connecting and filling vertices in path at fillseed 108352 Finding path.......................................................................................................................................................................................................................................... done Filling 108352 nlabel 7127 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009001.label Connecting and filling vertices in path at fillseed 106203 Finding path................................................................................................................................................................................................................................................................................................... done Filling 106203 nlabel 8108 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009101.label Connecting and filling vertices in path at fillseed 13205 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 13205 nlabel 4323 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009201.label Connecting and filling vertices in path at fillseed 98502 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98502 nlabel 7406 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009301.label Connecting and filling vertices in path at fillseed 15914 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 15914 nlabel 7732 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009401.label Connecting and filling vertices in path at fillseed 11890 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 11890 nlabel 7845 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009501.label Connecting and filling vertices in path at fillseed 11465 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 11465 nlabel 8283 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009601.label Connecting and filling vertices in path at fillseed 12102 Finding path................................................................................................................................................................................................................................ done Filling 12102 nlabel 6485 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009701.label Connecting and filling vertices in path at fillseed 16142 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 16142 nlabel 6842 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009801.label Connecting and filling vertices in path at fillseed 97275 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97275 nlabel 9265 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.009901.label Connecting and filling vertices in path at fillseed 16508 Finding path....................................................................................................................................................................................................................................................................... done Filling 16508 nlabel 5521 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010001.label Connecting and filling vertices in path at fillseed 11658 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 11658 nlabel 9346 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010101.label Connecting and filling vertices in path at fillseed 15846 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 15846 nlabel 8041 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010201.label Connecting and filling vertices in path at fillseed 102977 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 102977 nlabel 4369 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010301.label Connecting and filling vertices in path at fillseed 15955 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15955 nlabel 8102 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010401.label Connecting and filling vertices in path at fillseed 17326 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 17326 nlabel 7252 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010501.label Connecting and filling vertices in path at fillseed 13278 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13278 nlabel 6391 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010601.label Connecting and filling vertices in path at fillseed 14819 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 14819 nlabel 4364 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010701.label Connecting and filling vertices in path at fillseed 17177 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 17177 nlabel 7858 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010801.label Connecting and filling vertices in path at fillseed 16780 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16780 nlabel 7253 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.010901.label Connecting and filling vertices in path at fillseed 16154 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16154 nlabel 8494 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011001.label Connecting and filling vertices in path at fillseed 16505 Finding path............................................................................................................................................................................................................................................................................... done Filling 16505 nlabel 5350 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011101.label Connecting and filling vertices in path at fillseed 16612 Finding path............................................................................................................................................................................................................................................................................................ done Filling 16612 nlabel 8350 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011201.label Connecting and filling vertices in path at fillseed 18918 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 18918 nlabel 8198 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011301.label Connecting and filling vertices in path at fillseed 15754 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15754 nlabel 8707 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011401.label Connecting and filling vertices in path at fillseed 17109 Finding path.......................................................................................................................................................................................................................... done Filling 17109 nlabel 7431 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011501.label Connecting and filling vertices in path at fillseed 18040 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 18040 nlabel 7558 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011601.label Connecting and filling vertices in path at fillseed 16112 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16112 nlabel 8448 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011701.label Connecting and filling vertices in path at fillseed 17134 Finding path............................................................................................................................................................................................................................................................................................. done Filling 17134 nlabel 5393 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011801.label Connecting and filling vertices in path at fillseed 17907 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 17907 nlabel 8969 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.011901.label Connecting and filling vertices in path at fillseed 96123 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 96123 nlabel 8242 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012001.label Connecting and filling vertices in path at fillseed 92952 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92952 nlabel 9835 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012101.label Connecting and filling vertices in path at fillseed 92669 Finding path.................................................................................................................................................................................................................................................................................................................................................................................... done Filling 92669 nlabel 6759 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012201.label Connecting and filling vertices in path at fillseed 19393 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 19393 nlabel 8514 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012301.label Connecting and filling vertices in path at fillseed 21368 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 21368 nlabel 10550 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012401.label Connecting and filling vertices in path at fillseed 17155 Finding path............................................................................................................................................................................................................................................................. done Filling 17155 nlabel 3992 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012501.label Connecting and filling vertices in path at fillseed 19286 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 19286 nlabel 7700 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012601.label Connecting and filling vertices in path at fillseed 19442 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 19442 nlabel 7622 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012701.label Connecting and filling vertices in path at fillseed 22356 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22356 nlabel 10338 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012801.label Connecting and filling vertices in path at fillseed 23903 Finding path.......................................................................................................................................................................................................................................................................... done Filling 23903 nlabel 3991 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.012901.label Connecting and filling vertices in path at fillseed 20834 Finding path.......................................................................................................................................................................................................................................... done Filling 20834 nlabel 7894 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013001.label Connecting and filling vertices in path at fillseed 20239 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 20239 nlabel 9021 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013101.label Connecting and filling vertices in path at fillseed 17867 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 17867 nlabel 4895 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013201.label Connecting and filling vertices in path at fillseed 19868 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 19868 nlabel 9332 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013301.label Connecting and filling vertices in path at fillseed 18545 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 18545 nlabel 8318 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013401.label Connecting and filling vertices in path at fillseed 23861 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 23861 nlabel 7629 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013501.label Connecting and filling vertices in path at fillseed 17172 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 17172 nlabel 4822 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013601.label Connecting and filling vertices in path at fillseed 23887 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 23887 nlabel 5189 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013701.label Connecting and filling vertices in path at fillseed 23202 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 23202 nlabel 6294 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013801.label Connecting and filling vertices in path at fillseed 23881 Finding path........................................................................................................................................................................................................................................................................................ done Filling 23881 nlabel 7325 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.013901.label Connecting and filling vertices in path at fillseed 98090 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98090 nlabel 7077 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014001.label Connecting and filling vertices in path at fillseed 23884 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 23884 nlabel 4341 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014101.label Connecting and filling vertices in path at fillseed 20080 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 20080 nlabel 8243 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014201.label Connecting and filling vertices in path at fillseed 25161 Finding path................................................................................................................................................................................................................................................................................................... done Filling 25161 nlabel 7930 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014301.label Connecting and filling vertices in path at fillseed 25218 Finding path...................................................................................................................................................................................... done Filling 25218 nlabel 3669 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014401.label Connecting and filling vertices in path at fillseed 93378 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 93378 nlabel 5553 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014501.label Connecting and filling vertices in path at fillseed 20094 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 20094 nlabel 8892 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014601.label Connecting and filling vertices in path at fillseed 22591 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22591 nlabel 8721 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014701.label Connecting and filling vertices in path at fillseed 23030 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23030 nlabel 10396 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014801.label Connecting and filling vertices in path at fillseed 22271 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 22271 nlabel 11119 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.014901.label Connecting and filling vertices in path at fillseed 105596 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 105596 nlabel 8947 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015001.label Connecting and filling vertices in path at fillseed 25716 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 25716 nlabel 7396 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015101.label Connecting and filling vertices in path at fillseed 22801 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 22801 nlabel 9046 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015201.label Connecting and filling vertices in path at fillseed 25047 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25047 nlabel 9689 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015301.label Connecting and filling vertices in path at fillseed 21682 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 21682 nlabel 8562 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015401.label Connecting and filling vertices in path at fillseed 102219 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 102219 nlabel 8083 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015501.label Connecting and filling vertices in path at fillseed 22633 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 22633 nlabel 7453 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015601.label Connecting and filling vertices in path at fillseed 25177 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 25177 nlabel 5905 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015701.label Connecting and filling vertices in path at fillseed 92037 Finding path.................................................................................................................................................................................................................................... done Filling 92037 nlabel 5039 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015801.label Connecting and filling vertices in path at fillseed 94434 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 94434 nlabel 9234 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.015901.label Connecting and filling vertices in path at fillseed 26065 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 26065 nlabel 8252 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016001.label Connecting and filling vertices in path at fillseed 105127 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 105127 nlabel 8940 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016101.label Connecting and filling vertices in path at fillseed 89694 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89694 nlabel 8194 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016201.label Connecting and filling vertices in path at fillseed 105521 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 105521 nlabel 7524 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016301.label Connecting and filling vertices in path at fillseed 23422 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23422 nlabel 9780 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016401.label Connecting and filling vertices in path at fillseed 97965 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 97965 nlabel 6375 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016501.label Connecting and filling vertices in path at fillseed 33305 Finding path........................................................................................................................................................................................ done Filling 33305 nlabel 4573 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016601.label Connecting and filling vertices in path at fillseed 25627 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25627 nlabel 9290 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016701.label Connecting and filling vertices in path at fillseed 27329 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27329 nlabel 8362 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016801.label Connecting and filling vertices in path at fillseed 104129 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104129 nlabel 8733 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.016901.label Connecting and filling vertices in path at fillseed 33305 Finding path............................................................................................................................................................................................................................................... done Filling 33305 nlabel 4433 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017001.label Connecting and filling vertices in path at fillseed 90090 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 90090 nlabel 7393 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017101.label Connecting and filling vertices in path at fillseed 27320 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27320 nlabel 8637 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017201.label Connecting and filling vertices in path at fillseed 29568 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 29568 nlabel 8906 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017301.label Connecting and filling vertices in path at fillseed 94059 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 94059 nlabel 8432 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017401.label Connecting and filling vertices in path at fillseed 26820 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 26820 nlabel 8348 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017501.label Connecting and filling vertices in path at fillseed 103739 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103739 nlabel 7699 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017601.label Connecting and filling vertices in path at fillseed 101373 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 101373 nlabel 8416 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017701.label Connecting and filling vertices in path at fillseed 90190 Finding path.................................................................................................................................................................................................................................................................. done Filling 90190 nlabel 7160 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017801.label Connecting and filling vertices in path at fillseed 90450 Finding path....................................................................................................................................................................................................................... done Filling 90450 nlabel 6869 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.017901.label Connecting and filling vertices in path at fillseed 27981 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 27981 nlabel 8746 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018001.label Connecting and filling vertices in path at fillseed 28274 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 28274 nlabel 7408 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018101.label Connecting and filling vertices in path at fillseed 34798 Finding path................................................................................................................................................................................................. done Filling 34798 nlabel 4923 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018201.label Connecting and filling vertices in path at fillseed 33647 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33647 nlabel 8323 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018301.label Connecting and filling vertices in path at fillseed 89701 Finding path................................................................................................................................................................................................ done Filling 89701 nlabel 4994 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018401.label Connecting and filling vertices in path at fillseed 89964 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 89964 nlabel 5150 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018501.label Connecting and filling vertices in path at fillseed 34797 Finding path........................................................................................................................................................................................................................................ done Filling 34797 nlabel 5449 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018601.label Connecting and filling vertices in path at fillseed 33626 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 33626 nlabel 8141 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018701.label Connecting and filling vertices in path at fillseed 32767 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32767 nlabel 9364 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018801.label Connecting and filling vertices in path at fillseed 94951 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 94951 nlabel 6274 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.018901.label Connecting and filling vertices in path at fillseed 35521 Finding path.......................................................................................................................................................................................... done Filling 35521 nlabel 4778 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019001.label Connecting and filling vertices in path at fillseed 31596 Finding path....................................................................................................................................................................................................................................................... done Filling 31596 nlabel 6849 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019101.label Connecting and filling vertices in path at fillseed 31272 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 31272 nlabel 8688 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019201.label Connecting and filling vertices in path at fillseed 36887 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36887 nlabel 8617 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019301.label Connecting and filling vertices in path at fillseed 36279 Finding path....................................................................................................................................................................................................................................................................................... done Filling 36279 nlabel 5488 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019401.label Connecting and filling vertices in path at fillseed 96129 Finding path....................................................................................................................................................................................................... done Filling 96129 nlabel 7113 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019501.label Connecting and filling vertices in path at fillseed 35687 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 35687 nlabel 7327 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019601.label Connecting and filling vertices in path at fillseed 97982 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 97982 nlabel 10984 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019701.label Connecting and filling vertices in path at fillseed 34773 Finding path........................................................................................................................................................................................................................................................................................... done Filling 34773 nlabel 8482 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019801.label Connecting and filling vertices in path at fillseed 34020 Finding path............................................................................................................................................................................................. done Filling 34020 nlabel 6149 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.019901.label Connecting and filling vertices in path at fillseed 89567 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89567 nlabel 7635 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020001.label Connecting and filling vertices in path at fillseed 37047 Finding path.......................................................................................................................................................................................................................................................................... done Filling 37047 nlabel 5135 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020101.label Connecting and filling vertices in path at fillseed 34773 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 34773 nlabel 8560 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020201.label Connecting and filling vertices in path at fillseed 37025 Finding path........................................................................................................................................................................................................................................ done Filling 37025 nlabel 5666 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020301.label Connecting and filling vertices in path at fillseed 102770 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 102770 nlabel 10557 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020401.label Connecting and filling vertices in path at fillseed 37035 Finding path............................................................................................................................................................................................................................. done Filling 37035 nlabel 5033 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020501.label Connecting and filling vertices in path at fillseed 36249 Finding path............................................................................................................................................................................................................................................................................................... done Filling 36249 nlabel 8441 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020601.label Connecting and filling vertices in path at fillseed 38685 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 38685 nlabel 9247 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020701.label Connecting and filling vertices in path at fillseed 33770 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 33770 nlabel 11045 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020801.label Connecting and filling vertices in path at fillseed 36678 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 36678 nlabel 10025 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.020901.label Connecting and filling vertices in path at fillseed 30964 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 30964 nlabel 7160 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021001.label Connecting and filling vertices in path at fillseed 91061 Finding path............................................................................................................................................................................................................................................................. done Filling 91061 nlabel 5911 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021101.label Connecting and filling vertices in path at fillseed 36487 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36487 nlabel 9089 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021201.label Connecting and filling vertices in path at fillseed 37315 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37315 nlabel 9350 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021301.label Connecting and filling vertices in path at fillseed 37037 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37037 nlabel 5237 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021401.label Connecting and filling vertices in path at fillseed 39244 Finding path............................................................................................................................................................................................................................................................................................................................ done Filling 39244 nlabel 8068 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021501.label Connecting and filling vertices in path at fillseed 90453 Finding path................................................................................................................................................................................................................ done Filling 90453 nlabel 5539 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021601.label Connecting and filling vertices in path at fillseed 90438 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90438 nlabel 10370 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021701.label Connecting and filling vertices in path at fillseed 37768 Finding path............................................................................................................................................................................................................................ done Filling 37768 nlabel 5139 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021801.label Connecting and filling vertices in path at fillseed 40095 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 40095 nlabel 8523 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.021901.label Connecting and filling vertices in path at fillseed 39465 Finding path................................................................................................................................................................................................................................................................................................ done Filling 39465 nlabel 9573 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022001.label Connecting and filling vertices in path at fillseed 38447 Finding path............................................................................................................................................................................................ done Filling 38447 nlabel 6097 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022101.label Connecting and filling vertices in path at fillseed 37330 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37330 nlabel 7500 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022201.label Connecting and filling vertices in path at fillseed 38469 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 38469 nlabel 8889 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022301.label Connecting and filling vertices in path at fillseed 41941 Finding path.................................................................................................................................................................................................. done Filling 41941 nlabel 5017 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022401.label Connecting and filling vertices in path at fillseed 44016 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44016 nlabel 10451 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022501.label Connecting and filling vertices in path at fillseed 42352 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 42352 nlabel 7002 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022601.label Connecting and filling vertices in path at fillseed 105008 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 105008 nlabel 9065 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022701.label Connecting and filling vertices in path at fillseed 42744 Finding path................................................................................................................................................................................ done Filling 42744 nlabel 5309 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022801.label Connecting and filling vertices in path at fillseed 37675 Finding path.................................................................................................................................................................................................................................... done Filling 37675 nlabel 6478 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.022901.label Connecting and filling vertices in path at fillseed 41583 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 41583 nlabel 8508 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023001.label Connecting and filling vertices in path at fillseed 43492 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 43492 nlabel 9288 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023101.label Connecting and filling vertices in path at fillseed 44284 Finding path............................................................................................................................................................. done Filling 44284 nlabel 5407 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023201.label Connecting and filling vertices in path at fillseed 38436 Finding path....................................................................................................................................................................................................... done Filling 38436 nlabel 6292 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023301.label Connecting and filling vertices in path at fillseed 44979 Finding path................................................................................................................................................................................................... done Filling 44979 nlabel 5401 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023401.label Connecting and filling vertices in path at fillseed 40083 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 40083 nlabel 7279 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023501.label Connecting and filling vertices in path at fillseed 40329 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 40329 nlabel 10103 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023601.label Connecting and filling vertices in path at fillseed 89619 Finding path.................................................................................................................................................................................... done Filling 89619 nlabel 6440 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023701.label Connecting and filling vertices in path at fillseed 45657 Finding path.......................................................................................................................................................................................................................... done Filling 45657 nlabel 5573 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023801.label Connecting and filling vertices in path at fillseed 40068 Finding path.............................................................................................................................................................................................................................................................. done Filling 40068 nlabel 5959 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.023901.label Connecting and filling vertices in path at fillseed 103116 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 103116 nlabel 10861 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024001.label Connecting and filling vertices in path at fillseed 43178 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 43178 nlabel 8797 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024101.label Connecting and filling vertices in path at fillseed 97685 Finding path........................................................................................................................................................................ done Filling 97685 nlabel 6863 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024201.label Connecting and filling vertices in path at fillseed 42661 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 42661 nlabel 9659 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024301.label Connecting and filling vertices in path at fillseed 42783 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 42783 nlabel 11088 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024401.label Connecting and filling vertices in path at fillseed 43525 Finding path................................................................................................................................................................................................................... done Filling 43525 nlabel 5381 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024501.label Connecting and filling vertices in path at fillseed 43569 Finding path.................................................................................................................................................. done Filling 43569 nlabel 5918 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024601.label Connecting and filling vertices in path at fillseed 102651 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 102651 nlabel 8843 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024701.label Connecting and filling vertices in path at fillseed 40980 Finding path................................................................................................................................................................................................................................................................... done Filling 40980 nlabel 5920 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024801.label Connecting and filling vertices in path at fillseed 48708 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 48708 nlabel 11141 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.024901.label Connecting and filling vertices in path at fillseed 42254 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 42254 nlabel 11039 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025001.label Connecting and filling vertices in path at fillseed 44749 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44749 nlabel 10183 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025101.label Connecting and filling vertices in path at fillseed 108420 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 108420 nlabel 8558 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025201.label Connecting and filling vertices in path at fillseed 104218 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104218 nlabel 8292 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025301.label Connecting and filling vertices in path at fillseed 44315 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 44315 nlabel 11527 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025401.label Connecting and filling vertices in path at fillseed 43744 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 43744 nlabel 12436 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025501.label Connecting and filling vertices in path at fillseed 47085 Finding path..................................................................................................................................................................................................................................... done Filling 47085 nlabel 5176 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025601.label Connecting and filling vertices in path at fillseed 101943 Finding path.................................................................................................................................................................................................................. done Filling 101943 nlabel 5819 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025701.label Connecting and filling vertices in path at fillseed 47107 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 47107 nlabel 8827 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025801.label Connecting and filling vertices in path at fillseed 44418 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 44418 nlabel 10440 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.025901.label Connecting and filling vertices in path at fillseed 46744 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46744 nlabel 10564 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026001.label Connecting and filling vertices in path at fillseed 48971 Finding path.................................................................................................................................................................................................................. done Filling 48971 nlabel 6289 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026101.label Connecting and filling vertices in path at fillseed 49413 Finding path.................................................................................................................................................................................................................................................................... done Filling 49413 nlabel 5814 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026201.label Connecting and filling vertices in path at fillseed 48693 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 48693 nlabel 10798 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026301.label Connecting and filling vertices in path at fillseed 99047 Finding path................................................................................................................................................................................................ done Filling 99047 nlabel 5031 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026401.label Connecting and filling vertices in path at fillseed 47091 Finding path.................................................................................................................................................... done Filling 47091 nlabel 5530 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026501.label Connecting and filling vertices in path at fillseed 95997 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 95997 nlabel 8409 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026601.label Connecting and filling vertices in path at fillseed 53818 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53818 nlabel 5459 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026701.label Connecting and filling vertices in path at fillseed 53057 Finding path...................................................................................................................................................................................... done Filling 53057 nlabel 4595 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026801.label Connecting and filling vertices in path at fillseed 49095 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49095 nlabel 10112 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.026901.label Connecting and filling vertices in path at fillseed 51283 Finding path............................................................................................................................................................................................................................................................. done Filling 51283 nlabel 7287 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027001.label Connecting and filling vertices in path at fillseed 47849 Finding path......................................................................................................................................................................................................................................................... done Filling 47849 nlabel 7994 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027101.label Connecting and filling vertices in path at fillseed 50993 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 50993 nlabel 10185 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027201.label Connecting and filling vertices in path at fillseed 49100 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 49100 nlabel 11967 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027301.label Connecting and filling vertices in path at fillseed 98924 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 98924 nlabel 7774 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027401.label Connecting and filling vertices in path at fillseed 52322 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 52322 nlabel 7922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027501.label Connecting and filling vertices in path at fillseed 54598 Finding path....................................................................................................................................................................... done Filling 54598 nlabel 4741 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027601.label Connecting and filling vertices in path at fillseed 93175 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93175 nlabel 13184 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027701.label Connecting and filling vertices in path at fillseed 52110 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 52110 nlabel 7549 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027801.label Connecting and filling vertices in path at fillseed 53026 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53026 nlabel 7649 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.027901.label Connecting and filling vertices in path at fillseed 95665 Finding path..................................................................................................................................................................... done Filling 95665 nlabel 4849 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028001.label Connecting and filling vertices in path at fillseed 51194 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51194 nlabel 10668 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028101.label Connecting and filling vertices in path at fillseed 52613 Finding path......................................................................................................................................................... done Filling 52613 nlabel 6152 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028201.label Connecting and filling vertices in path at fillseed 51609 Finding path..................................................................................................................................................................................................................................................................... done Filling 51609 nlabel 6030 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028301.label Connecting and filling vertices in path at fillseed 56049 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 56049 nlabel 4339 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028401.label Connecting and filling vertices in path at fillseed 53017 Finding path.................................................................................................................................................................................. done Filling 53017 nlabel 5224 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028501.label Connecting and filling vertices in path at fillseed 53944 Finding path.................................................................................................................................................................. done Filling 53944 nlabel 5634 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028601.label Connecting and filling vertices in path at fillseed 54462 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54462 nlabel 8011 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028701.label Connecting and filling vertices in path at fillseed 107780 Finding path................................................................................................................................................................................................................................................................ done Filling 107780 nlabel 8072 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028801.label Connecting and filling vertices in path at fillseed 53006 Finding path........................................................................................................................................................ done Filling 53006 nlabel 4312 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.028901.label Connecting and filling vertices in path at fillseed 50716 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 50716 nlabel 10785 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029001.label Connecting and filling vertices in path at fillseed 91578 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 91578 nlabel 5800 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029101.label Connecting and filling vertices in path at fillseed 51628 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 51628 nlabel 8950 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029201.label Connecting and filling vertices in path at fillseed 53243 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 53243 nlabel 8563 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029301.label Connecting and filling vertices in path at fillseed 55646 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55646 nlabel 13909 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029401.label Connecting and filling vertices in path at fillseed 53080 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 53080 nlabel 6272 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029501.label Connecting and filling vertices in path at fillseed 53070 Finding path................................................................................................................................................................................................................................... done Filling 53070 nlabel 6525 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029601.label Connecting and filling vertices in path at fillseed 53995 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53995 nlabel 10023 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029701.label Connecting and filling vertices in path at fillseed 54460 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 54460 nlabel 8224 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029801.label Connecting and filling vertices in path at fillseed 56985 Finding path................................................................................................................................................................................................................................. done Filling 56985 nlabel 6371 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 91135 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 91135 nlabel 8263 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 54640 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 54640 nlabel 10499 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030101.label Connecting and filling vertices in path at fillseed 55203 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55203 nlabel 6829 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030201.label Connecting and filling vertices in path at fillseed 55498 Finding path......................................................................................................................................................................................................................... done Filling 55498 nlabel 5822 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030301.label Connecting and filling vertices in path at fillseed 100339 Finding path................................................................................................................................................................................................................................................................................................................................................................................ done Filling 100339 nlabel 8195 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030401.label Connecting and filling vertices in path at fillseed 58035 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58035 nlabel 4680 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030501.label Connecting and filling vertices in path at fillseed 55971 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 55971 nlabel 5944 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030601.label Connecting and filling vertices in path at fillseed 58672 Finding path................................................................................................................................................................................................................ done Filling 58672 nlabel 5305 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030701.label Connecting and filling vertices in path at fillseed 59720 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 59720 nlabel 8408 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030801.label Connecting and filling vertices in path at fillseed 60418 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60418 nlabel 4286 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030901.label Connecting and filling vertices in path at fillseed 58132 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 58132 nlabel 8833 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031001.label Connecting and filling vertices in path at fillseed 54302 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 54302 nlabel 12587 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031101.label Connecting and filling vertices in path at fillseed 100960 Finding path................................................................................................................................................................................................................................................. done Filling 100960 nlabel 7752 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031201.label Connecting and filling vertices in path at fillseed 55293 Finding path.................................................................................................................................................................................................................................................................. done Filling 55293 nlabel 7386 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031301.label Connecting and filling vertices in path at fillseed 98866 Finding path...................................................................................................................................................................................................................................................................................................................... done Filling 98866 nlabel 10274 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031401.label Connecting and filling vertices in path at fillseed 57335 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57335 nlabel 9925 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031501.label Connecting and filling vertices in path at fillseed 58663 Finding path................................................................................................................................................................................................... done Filling 58663 nlabel 5568 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031601.label Connecting and filling vertices in path at fillseed 59846 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 59846 nlabel 6658 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031701.label Connecting and filling vertices in path at fillseed 62649 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62649 nlabel 5241 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031801.label Connecting and filling vertices in path at fillseed 58737 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 58737 nlabel 9650 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.031901.label Connecting and filling vertices in path at fillseed 58286 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58286 nlabel 13749 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032001.label Connecting and filling vertices in path at fillseed 59843 Finding path................................................................................................................................................................................................ done Filling 59843 nlabel 4636 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032101.label Connecting and filling vertices in path at fillseed 60379 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60379 nlabel 6508 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032201.label Connecting and filling vertices in path at fillseed 61488 Finding path...................................................................................................................................................................... done Filling 61488 nlabel 3638 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032301.label Connecting and filling vertices in path at fillseed 61929 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61929 nlabel 13237 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032401.label Connecting and filling vertices in path at fillseed 60017 Finding path............................................................................................................................................................................................... done Filling 60017 nlabel 6177 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032501.label Connecting and filling vertices in path at fillseed 61396 Finding path............................................................................................................................................................................................................................................................................................................................................................... done Filling 61396 nlabel 8406 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032601.label Connecting and filling vertices in path at fillseed 63226 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63226 nlabel 5026 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032701.label Connecting and filling vertices in path at fillseed 59961 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 59961 nlabel 9526 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032801.label Connecting and filling vertices in path at fillseed 58884 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 58884 nlabel 12386 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.032901.label Connecting and filling vertices in path at fillseed 59844 Finding path................................................................................................................................................................... done Filling 59844 nlabel 5319 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033001.label Connecting and filling vertices in path at fillseed 62025 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62025 nlabel 8152 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033101.label Connecting and filling vertices in path at fillseed 59338 Finding path...................................................................................................................................................................................................................................................................................................................................................... done Filling 59338 nlabel 9560 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033201.label Connecting and filling vertices in path at fillseed 58232 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 58232 nlabel 10797 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033301.label Connecting and filling vertices in path at fillseed 62340 Finding path........................................................................................................................................................................................ done Filling 62340 nlabel 5212 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033401.label Connecting and filling vertices in path at fillseed 106795 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 106795 nlabel 8390 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033501.label Connecting and filling vertices in path at fillseed 108970 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 108970 nlabel 5826 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033601.label Connecting and filling vertices in path at fillseed 59948 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 59948 nlabel 10966 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033701.label Connecting and filling vertices in path at fillseed 62839 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62839 nlabel 13771 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033801.label Connecting and filling vertices in path at fillseed 63459 Finding path....................................................................................................................................................................... done Filling 63459 nlabel 5607 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.033901.label Connecting and filling vertices in path at fillseed 89836 Finding path.............................................................................................................................................................................................. done Filling 89836 nlabel 4651 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034001.label Connecting and filling vertices in path at fillseed 106462 Finding path.................................................................................................................................................................................................................................................... done Filling 106462 nlabel 7091 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034101.label Connecting and filling vertices in path at fillseed 59779 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59779 nlabel 7180 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034201.label Connecting and filling vertices in path at fillseed 63537 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63537 nlabel 13763 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034301.label Connecting and filling vertices in path at fillseed 66142 Finding path............................................................................................................................................................................................................................................... done Filling 66142 nlabel 5273 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034401.label Connecting and filling vertices in path at fillseed 61499 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 61499 nlabel 6524 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034501.label Connecting and filling vertices in path at fillseed 65090 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65090 nlabel 4011 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034601.label Connecting and filling vertices in path at fillseed 64679 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64679 nlabel 11985 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034701.label Connecting and filling vertices in path at fillseed 63367 Finding path..................................................................................................................................................................................... done Filling 63367 nlabel 5174 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034801.label Connecting and filling vertices in path at fillseed 103298 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103298 nlabel 6063 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.034901.label Connecting and filling vertices in path at fillseed 63833 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 63833 nlabel 3503 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035001.label Connecting and filling vertices in path at fillseed 63396 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 63396 nlabel 10263 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035101.label Connecting and filling vertices in path at fillseed 65982 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 65982 nlabel 5503 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035201.label Connecting and filling vertices in path at fillseed 67756 Finding path............................................................................................................................................................................................................................................................................................................................................................................ done Filling 67756 nlabel 5884 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035301.label Connecting and filling vertices in path at fillseed 63869 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 63869 nlabel 7896 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035401.label Connecting and filling vertices in path at fillseed 65585 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65585 nlabel 9941 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035501.label Connecting and filling vertices in path at fillseed 64162 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 64162 nlabel 14256 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035601.label Connecting and filling vertices in path at fillseed 90740 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 90740 nlabel 5392 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035701.label Connecting and filling vertices in path at fillseed 63864 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 63864 nlabel 7276 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035801.label Connecting and filling vertices in path at fillseed 65605 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65605 nlabel 7037 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.035901.label Connecting and filling vertices in path at fillseed 66808 Finding path...................................................................................................................... done Filling 66808 nlabel 4869 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036001.label Connecting and filling vertices in path at fillseed 69232 Finding path............................................................................................................................................................................................................................................................................................................................................................ done Filling 69232 nlabel 5761 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036101.label Connecting and filling vertices in path at fillseed 103550 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 103550 nlabel 4248 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036201.label Connecting and filling vertices in path at fillseed 66674 Finding path....................................................................................................................................................................................................................................................................................... done Filling 66674 nlabel 9053 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036301.label Connecting and filling vertices in path at fillseed 67696 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 67696 nlabel 5634 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036401.label Connecting and filling vertices in path at fillseed 90013 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90013 nlabel 5616 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036501.label Connecting and filling vertices in path at fillseed 90486 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90486 nlabel 4881 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036601.label Connecting and filling vertices in path at fillseed 66674 Finding path....................................................................................................................................................................................................................................................................................... done Filling 66674 nlabel 9171 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036701.label Connecting and filling vertices in path at fillseed 65379 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65379 nlabel 13346 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036801.label Connecting and filling vertices in path at fillseed 66276 Finding path........................................................................................................................................................................ done Filling 66276 nlabel 5142 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.036901.label Connecting and filling vertices in path at fillseed 89879 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 89879 nlabel 5445 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037001.label Connecting and filling vertices in path at fillseed 67078 Finding path............................................................................................................................................................................................................................................ done Filling 67078 nlabel 8980 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037101.label Connecting and filling vertices in path at fillseed 65454 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65454 nlabel 12452 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037201.label Connecting and filling vertices in path at fillseed 69283 Finding path........................................................................................................................................................... done Filling 69283 nlabel 3659 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037301.label Connecting and filling vertices in path at fillseed 90220 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 90220 nlabel 5401 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037401.label Connecting and filling vertices in path at fillseed 66571 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 66571 nlabel 4199 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037501.label Connecting and filling vertices in path at fillseed 65923 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65923 nlabel 12822 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037601.label Connecting and filling vertices in path at fillseed 69209 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 69209 nlabel 5310 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037701.label Connecting and filling vertices in path at fillseed 67848 Finding path.............................................................................................................................................. done Filling 67848 nlabel 6052 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037801.label Connecting and filling vertices in path at fillseed 67914 Finding path......................................................................................................................................................................................................................................................................................... done Filling 67914 nlabel 9611 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.037901.label Connecting and filling vertices in path at fillseed 68581 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68581 nlabel 12392 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038001.label Connecting and filling vertices in path at fillseed 97419 Finding path.......................................................................................................................................... done Filling 97419 nlabel 4963 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038101.label Connecting and filling vertices in path at fillseed 66970 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 66970 nlabel 5691 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038201.label Connecting and filling vertices in path at fillseed 95477 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 95477 nlabel 4369 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038301.label Connecting and filling vertices in path at fillseed 66479 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66479 nlabel 7449 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038401.label Connecting and filling vertices in path at fillseed 68629 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68629 nlabel 6070 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038501.label Connecting and filling vertices in path at fillseed 90690 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 90690 nlabel 5107 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038601.label Connecting and filling vertices in path at fillseed 69300 Finding path........................................................................................................................................................................................................................................................................................... done Filling 69300 nlabel 7819 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038701.label Connecting and filling vertices in path at fillseed 68877 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 68877 nlabel 8998 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038801.label Connecting and filling vertices in path at fillseed 70522 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 70522 nlabel 11183 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.038901.label Connecting and filling vertices in path at fillseed 69329 Finding path.................................................................................................................................................................................. done Filling 69329 nlabel 4595 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039001.label Connecting and filling vertices in path at fillseed 67398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 67398 nlabel 6415 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039101.label Connecting and filling vertices in path at fillseed 69743 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69743 nlabel 7303 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039201.label Connecting and filling vertices in path at fillseed 69132 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69132 nlabel 11231 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039301.label Connecting and filling vertices in path at fillseed 105810 Finding path............................................................................................................................................................................................................................................................................................................................................... done Filling 105810 nlabel 6535 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039401.label Connecting and filling vertices in path at fillseed 72901 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 72901 nlabel 6523 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039501.label Connecting and filling vertices in path at fillseed 70808 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 70808 nlabel 9129 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039601.label Connecting and filling vertices in path at fillseed 66907 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 66907 nlabel 10782 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039701.label Connecting and filling vertices in path at fillseed 70956 Finding path.......................................................................................................................... done Filling 70956 nlabel 5284 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039801.label Connecting and filling vertices in path at fillseed 71194 Finding path.................................................................................................................................................................................................. done Filling 71194 nlabel 4382 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.039901.label Connecting and filling vertices in path at fillseed 104865 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 104865 nlabel 9305 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040001.label Connecting and filling vertices in path at fillseed 70907 Finding path......................................................................................................................................................................................................................................... done Filling 70907 nlabel 7349 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040101.label Connecting and filling vertices in path at fillseed 71546 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 71546 nlabel 6110 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040201.label Connecting and filling vertices in path at fillseed 73277 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73277 nlabel 6470 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040301.label Connecting and filling vertices in path at fillseed 71251 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 71251 nlabel 8797 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040401.label Connecting and filling vertices in path at fillseed 72365 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 72365 nlabel 10657 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040501.label Connecting and filling vertices in path at fillseed 73593 Finding path........................................................................................................................................... done Filling 73593 nlabel 4745 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040601.label Connecting and filling vertices in path at fillseed 73714 Finding path............................................................................................................................................................................................................................................................................................................................................................................................ done Filling 73714 nlabel 6165 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040701.label Connecting and filling vertices in path at fillseed 70264 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70264 nlabel 5004 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040801.label Connecting and filling vertices in path at fillseed 71326 Finding path.................................................................................................................................................................................................................................................... done Filling 71326 nlabel 7400 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.040901.label Connecting and filling vertices in path at fillseed 73599 Finding path........................................................................................................................................................... done Filling 73599 nlabel 4922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041001.label Connecting and filling vertices in path at fillseed 74590 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74590 nlabel 6257 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041101.label Connecting and filling vertices in path at fillseed 68757 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 68757 nlabel 5821 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041201.label Connecting and filling vertices in path at fillseed 71177 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71177 nlabel 10102 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041301.label Connecting and filling vertices in path at fillseed 71448 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71448 nlabel 12219 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041401.label Connecting and filling vertices in path at fillseed 72500 Finding path........................................................................................................................................................... done Filling 72500 nlabel 4273 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041501.label Connecting and filling vertices in path at fillseed 72089 Finding path.................................................................................................................................................................................................. done Filling 72089 nlabel 6735 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041601.label Connecting and filling vertices in path at fillseed 71643 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 71643 nlabel 7197 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041701.label Connecting and filling vertices in path at fillseed 105167 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105167 nlabel 10933 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041801.label Connecting and filling vertices in path at fillseed 74997 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 74997 nlabel 5190 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.041901.label Connecting and filling vertices in path at fillseed 72497 Finding path................................................................................................................................................................................... done Filling 72497 nlabel 5142 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042001.label Connecting and filling vertices in path at fillseed 70734 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 70734 nlabel 7392 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042101.label Connecting and filling vertices in path at fillseed 73002 Finding path...................................................................................................................................................................................................................................................................... done Filling 73002 nlabel 8287 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042201.label Connecting and filling vertices in path at fillseed 73565 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73565 nlabel 10642 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042301.label Connecting and filling vertices in path at fillseed 75809 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 75809 nlabel 4668 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042401.label Connecting and filling vertices in path at fillseed 74210 Finding path....................................................................................................................................................................................... done Filling 74210 nlabel 5847 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042501.label Connecting and filling vertices in path at fillseed 73849 Finding path............................................................................................................................................................................................................................................................................................ done Filling 73849 nlabel 7796 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042601.label Connecting and filling vertices in path at fillseed 75122 Finding path..................................................................................................................... done Filling 75122 nlabel 4517 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042701.label Connecting and filling vertices in path at fillseed 76198 Finding path.............................................................................................................................................................................................................................................................................................................................................................................. done Filling 76198 nlabel 5896 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042801.label Connecting and filling vertices in path at fillseed 73813 Finding path................................................................................................................................................................................. done Filling 73813 nlabel 8524 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.042901.label Connecting and filling vertices in path at fillseed 105158 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 105158 nlabel 11066 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043001.label Connecting and filling vertices in path at fillseed 97221 Finding path.................................................................................................................................. done Filling 97221 nlabel 4374 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043101.label Connecting and filling vertices in path at fillseed 75850 Finding path................................................................................................................................................................... done Filling 75850 nlabel 6492 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043201.label Connecting and filling vertices in path at fillseed 74290 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74290 nlabel 7389 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043301.label Connecting and filling vertices in path at fillseed 101401 Finding path........................................................................................................ done Filling 101401 nlabel 4523 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043401.label Connecting and filling vertices in path at fillseed 77496 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 77496 nlabel 6001 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043501.label Connecting and filling vertices in path at fillseed 77472 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 77472 nlabel 7289 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043601.label Connecting and filling vertices in path at fillseed 106029 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 106029 nlabel 6741 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043701.label Connecting and filling vertices in path at fillseed 75539 Finding path.............................................................................................................. done Filling 75539 nlabel 4853 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043801.label Connecting and filling vertices in path at fillseed 74608 Finding path................................................................................................................................................................................................................ done Filling 74608 nlabel 5432 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.043901.label Connecting and filling vertices in path at fillseed 78149 Finding path........................................................................................................................................................................................................................................................................ done Filling 78149 nlabel 7278 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044001.label Connecting and filling vertices in path at fillseed 77072 Finding path................................................................................................................................................... done Filling 77072 nlabel 4545 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044101.label Connecting and filling vertices in path at fillseed 98955 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98955 nlabel 6069 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044201.label Connecting and filling vertices in path at fillseed 78104 Finding path........................................................................................................................................................................................................................ done Filling 78104 nlabel 9025 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044301.label Connecting and filling vertices in path at fillseed 76069 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76069 nlabel 10251 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044401.label Connecting and filling vertices in path at fillseed 76568 Finding path.................................................................................................................................... done Filling 76568 nlabel 3663 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044501.label Connecting and filling vertices in path at fillseed 104170 Finding path.......................................................................................................................................................................................................................................................... done Filling 104170 nlabel 7599 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044601.label Connecting and filling vertices in path at fillseed 75684 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75684 nlabel 11066 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044701.label Connecting and filling vertices in path at fillseed 78510 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 78510 nlabel 4738 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044801.label Connecting and filling vertices in path at fillseed 79014 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79014 nlabel 6048 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.044901.label Connecting and filling vertices in path at fillseed 79907 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 79907 nlabel 7822 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045001.label Connecting and filling vertices in path at fillseed 94206 Finding path...................................................................................................................... done Filling 94206 nlabel 4569 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045101.label Connecting and filling vertices in path at fillseed 77508 Finding path.................................................................................................................................................................. done Filling 77508 nlabel 4771 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045201.label Connecting and filling vertices in path at fillseed 78620 Finding path.................................................................................................................................................................................................................................................................................. done Filling 78620 nlabel 8392 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045301.label Connecting and filling vertices in path at fillseed 80440 Finding path................................................................................................................................. done Filling 80440 nlabel 4634 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045401.label Connecting and filling vertices in path at fillseed 79973 Finding path................................................................................................................................... done Filling 79973 nlabel 3558 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045501.label Connecting and filling vertices in path at fillseed 78060 Finding path.............................................................................................................................................................. done Filling 78060 nlabel 6901 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045601.label Connecting and filling vertices in path at fillseed 81031 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81031 nlabel 8808 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045701.label Connecting and filling vertices in path at fillseed 80739 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 80739 nlabel 5134 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045801.label Connecting and filling vertices in path at fillseed 106090 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 106090 nlabel 7794 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.045901.label Connecting and filling vertices in path at fillseed 78204 Finding path................................................................................................................................................................................................................... done Filling 78204 nlabel 6650 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046001.label Connecting and filling vertices in path at fillseed 90150 Finding path................................................................................................................................................... done Filling 90150 nlabel 4834 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046101.label Connecting and filling vertices in path at fillseed 79923 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 79923 nlabel 6144 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046201.label Connecting and filling vertices in path at fillseed 79217 Finding path....................................................................................................................................................................................................................................... done Filling 79217 nlabel 7310 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046301.label Connecting and filling vertices in path at fillseed 81999 Finding path....................................................................................................................................................... done Filling 81999 nlabel 4849 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046401.label Connecting and filling vertices in path at fillseed 80375 Finding path.................................................................................................................................. done Filling 80375 nlabel 3985 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046501.label Connecting and filling vertices in path at fillseed 80016 Finding path.............................................................................................................................................................. done Filling 80016 nlabel 6914 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046601.label Connecting and filling vertices in path at fillseed 80963 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80963 nlabel 7083 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046701.label Connecting and filling vertices in path at fillseed 82481 Finding path...................................................................................................................................................... done Filling 82481 nlabel 4493 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046801.label Connecting and filling vertices in path at fillseed 99917 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99917 nlabel 7615 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.046901.label Connecting and filling vertices in path at fillseed 81924 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 81924 nlabel 6773 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047001.label Connecting and filling vertices in path at fillseed 81427 Finding path.............................................................................................................................. done Filling 81427 nlabel 3614 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047101.label Connecting and filling vertices in path at fillseed 79073 Finding path.................................................................................................................................................................................... done Filling 79073 nlabel 6837 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047201.label Connecting and filling vertices in path at fillseed 82243 Finding path........................................................................................................................................................................................................................ done Filling 82243 nlabel 7438 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047301.label Connecting and filling vertices in path at fillseed 90017 Finding path.................................................................................................... done Filling 90017 nlabel 4714 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047401.label Connecting and filling vertices in path at fillseed 80382 Finding path................................................................................................................................................................. done Filling 80382 nlabel 5865 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047501.label Connecting and filling vertices in path at fillseed 101643 Finding path............................................................................................................................................................................................................. done Filling 101643 nlabel 6369 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047601.label Connecting and filling vertices in path at fillseed 83274 Finding path.......................................................................................................... done Filling 83274 nlabel 4263 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047701.label Connecting and filling vertices in path at fillseed 81795 Finding path................................................................................................................ done Filling 81795 nlabel 3728 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047801.label Connecting and filling vertices in path at fillseed 83169 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83169 nlabel 7363 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.047901.label Connecting and filling vertices in path at fillseed 82715 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82715 nlabel 6859 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048001.label Connecting and filling vertices in path at fillseed 84454 Finding path....................................................................................................................................... done Filling 84454 nlabel 4019 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048101.label Connecting and filling vertices in path at fillseed 80800 Finding path........................................................................................................................ done Filling 80800 nlabel 6224 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048201.label Connecting and filling vertices in path at fillseed 83010 Finding path...................................................................................................................................................................................... done Filling 83010 nlabel 5983 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048301.label Connecting and filling vertices in path at fillseed 92218 Finding path............................................................................................................ done Filling 92218 nlabel 4106 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048401.label Connecting and filling vertices in path at fillseed 83847 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83847 nlabel 6313 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048501.label Connecting and filling vertices in path at fillseed 83537 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 83537 nlabel 7578 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048601.label Connecting and filling vertices in path at fillseed 85051 Finding path................................................................................................................................................... done Filling 85051 nlabel 4411 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048701.label Connecting and filling vertices in path at fillseed 83888 Finding path..................................................................................................................................................................................... done Filling 83888 nlabel 6579 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048801.label Connecting and filling vertices in path at fillseed 83709 Finding path..................................................................................................................................................................................................................... done Filling 83709 nlabel 6355 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.048901.label Connecting and filling vertices in path at fillseed 90333 Finding path................................................................................................................................................. done Filling 90333 nlabel 4643 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049001.label Connecting and filling vertices in path at fillseed 84153 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 84153 nlabel 5707 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049101.label Connecting and filling vertices in path at fillseed 97335 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97335 nlabel 7535 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049201.label Connecting and filling vertices in path at fillseed 84322 Finding path............................................................................................................................................................................ done Filling 84322 nlabel 5395 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049301.label Connecting and filling vertices in path at fillseed 85395 Finding path................................................................................................................................ done Filling 85395 nlabel 3467 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049401.label Connecting and filling vertices in path at fillseed 84477 Finding path............................................................................................................................................. done Filling 84477 nlabel 5957 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049501.label Connecting and filling vertices in path at fillseed 96635 Finding path............................................................................................................................................................................................... done Filling 96635 nlabel 6210 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049601.label Connecting and filling vertices in path at fillseed 87235 Finding path................................................................................................ done Filling 87235 nlabel 4423 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049701.label Connecting and filling vertices in path at fillseed 92385 Finding path.................................................................................................................................. done Filling 92385 nlabel 5247 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049801.label Connecting and filling vertices in path at fillseed 85049 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 85049 nlabel 5438 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.049901.label Connecting and filling vertices in path at fillseed 87234 Finding path................................................................................................................................................ done Filling 87234 nlabel 4348 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050001.label Connecting and filling vertices in path at fillseed 84782 Finding path................................................................................................................................................... done Filling 84782 nlabel 5202 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050101.label Connecting and filling vertices in path at fillseed 83986 Finding path..................................................................................................................................................................................... done Filling 83986 nlabel 6555 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050201.label Connecting and filling vertices in path at fillseed 86312 Finding path..................................................................................................................... done Filling 86312 nlabel 4365 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050301.label Connecting and filling vertices in path at fillseed 86823 Finding path.......................................................................................................................................... done Filling 86823 nlabel 4610 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050401.label Connecting and filling vertices in path at fillseed 83974 Finding path........................................................................................................................................................................................................ done Filling 83974 nlabel 7589 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050501.label Connecting and filling vertices in path at fillseed 85995 Finding path............................................................................................................................. done Filling 85995 nlabel 3311 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050601.label Connecting and filling vertices in path at fillseed 84780 Finding path................................................................................................................................................................. done Filling 84780 nlabel 4725 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050701.label Connecting and filling vertices in path at fillseed 83688 Finding path......................................................................................................................................................... done Filling 83688 nlabel 6710 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050801.label Connecting and filling vertices in path at fillseed 87186 Finding path.................................................................................................... done Filling 87186 nlabel 4320 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.050901.label Connecting and filling vertices in path at fillseed 86817 Finding path.................................................................................................................................... done Filling 86817 nlabel 4830 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051001.label Connecting and filling vertices in path at fillseed 85827 Finding path........................................................................................................................................................................ done Filling 85827 nlabel 5747 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051101.label Connecting and filling vertices in path at fillseed 86522 Finding path................................................................................................ done Filling 86522 nlabel 2877 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051201.label Connecting and filling vertices in path at fillseed 95735 Finding path............................................................................................................................................ done Filling 95735 nlabel 4978 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051301.label Connecting and filling vertices in path at fillseed 85838 Finding path.................................................................................................................................. done Filling 85838 nlabel 5563 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051401.label Connecting and filling vertices in path at fillseed 86266 Finding path........................................................................................................................................... done Filling 86266 nlabel 4933 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051501.label Connecting and filling vertices in path at fillseed 85765 Finding path......................................................................................................................................................................................................... done Filling 85765 nlabel 6070 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051601.label Connecting and filling vertices in path at fillseed 87637 Finding path................................................................................................................................................ done Filling 87637 nlabel 3664 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051701.label Connecting and filling vertices in path at fillseed 86267 Finding path............................................................................................................................................. done Filling 86267 nlabel 4848 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051801.label Connecting and filling vertices in path at fillseed 86893 Finding path............................................................................................................................. done Filling 86893 nlabel 6357 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.051901.label Connecting and filling vertices in path at fillseed 96134 Finding path...................................................................................................................................................... done Filling 96134 nlabel 3835 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052001.label Connecting and filling vertices in path at fillseed 86541 Finding path............................................................................................................................................. done Filling 86541 nlabel 5495 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052101.label Connecting and filling vertices in path at fillseed 97175 Finding path.................................................................................................................................. done Filling 97175 nlabel 6585 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052201.label Connecting and filling vertices in path at fillseed 88465 Finding path.......................................................................................................................... done Filling 88465 nlabel 4102 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052301.label Connecting and filling vertices in path at fillseed 87831 Finding path......................................................................................................................................................... done Filling 87831 nlabel 4780 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052401.label Connecting and filling vertices in path at fillseed 86644 Finding path................................................................................................................................................................................ done Filling 86644 nlabel 6401 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052501.label Connecting and filling vertices in path at fillseed 88070 Finding path................................................................................................................. done Filling 88070 nlabel 2680 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052601.label Connecting and filling vertices in path at fillseed 87564 Finding path............................................................................................................................................................. done Filling 87564 nlabel 4714 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052701.label Connecting and filling vertices in path at fillseed 88474 Finding path........................................................................................................ done Filling 88474 nlabel 3360 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052801.label Connecting and filling vertices in path at fillseed 97422 Finding path.................................................................................................................................. done Filling 97422 nlabel 3413 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.052901.label Connecting and filling vertices in path at fillseed 88006 Finding path....................................................................................................................... done Filling 88006 nlabel 4530 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053001.label Connecting and filling vertices in path at fillseed 92704 Finding path............................................................................................................................................. done Filling 92704 nlabel 4114 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053101.label Connecting and filling vertices in path at fillseed 88279 Finding path...................................................................................................................................... done Filling 88279 nlabel 3508 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053201.label Connecting and filling vertices in path at fillseed 87941 Finding path............................................................................................................................... done Filling 87941 nlabel 5711 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053301.label Connecting and filling vertices in path at fillseed 89059 Finding path............................................................................................................................ done Filling 89059 nlabel 3652 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053401.label Connecting and filling vertices in path at fillseed 88081 Finding path................................................................................................................................................................. done Filling 88081 nlabel 5042 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053501.label Connecting and filling vertices in path at fillseed 87911 Finding path................................................................................................................................................... done Filling 87911 nlabel 5411 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053601.label Connecting and filling vertices in path at fillseed 92704 Finding path....................................................................................................................................... done Filling 92704 nlabel 3897 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053701.label Connecting and filling vertices in path at fillseed 88682 Finding path............................................................................................................................ done Filling 88682 nlabel 3016 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053801.label Connecting and filling vertices in path at fillseed 87685 Finding path........................................................................................................................................ done Filling 87685 nlabel 5712 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.053901.label Connecting and filling vertices in path at fillseed 89218 Finding path................................................................................................ done Filling 89218 nlabel 3894 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054001.label Connecting and filling vertices in path at fillseed 88692 Finding path...................................................................................................................................................... done Filling 88692 nlabel 5205 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054101.label Connecting and filling vertices in path at fillseed 88430 Finding path............................................................................................................................. done Filling 88430 nlabel 4565 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054201.label Connecting and filling vertices in path at fillseed 92279 Finding path................................................................................................................................................. done Filling 92279 nlabel 3766 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054301.label Connecting and filling vertices in path at fillseed 88890 Finding path....................................................................................................................................................... done Filling 88890 nlabel 4958 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054401.label Connecting and filling vertices in path at fillseed 88819 Finding path.............................................................................................................. done Filling 88819 nlabel 4024 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054501.label Connecting and filling vertices in path at fillseed 89022 Finding path........................................................................................................................ done Filling 89022 nlabel 3652 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054601.label Connecting and filling vertices in path at fillseed 88691 Finding path....................................................................................................................................... done Filling 88691 nlabel 5102 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054701.label Connecting and filling vertices in path at fillseed 88779 Finding path.......................................................................................................................... done Filling 88779 nlabel 4423 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054801.label Connecting and filling vertices in path at fillseed 89157 Finding path................................................................................................................................................ done Filling 89157 nlabel 3874 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.054901.label Connecting and filling vertices in path at fillseed 89049 Finding path.................................................................................................................................................... done Filling 89049 nlabel 5407 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055001.label Connecting and filling vertices in path at fillseed 89295 Finding path....................................................................................................................... done Filling 89295 nlabel 3505 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055101.label Connecting and filling vertices in path at fillseed 89260 Finding path................................................................................................. done Filling 89260 nlabel 4446 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055201.label Connecting and filling vertices in path at fillseed 89381 Finding path..................................................................................................................... done Filling 89381 nlabel 3577 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055301.label Connecting and filling vertices in path at fillseed 89333 Finding path.................................................................................................................................. done Filling 89333 nlabel 4383 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055401.label Connecting and filling vertices in path at fillseed 89365 Finding path.......................................................................................................................................... done Filling 89365 nlabel 3580 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055501.label Connecting and filling vertices in path at fillseed 89374 Finding path......................................................................................................... done Filling 89374 nlabel 4170 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.055601.label ================= compute_lgi('lh.pial','lh.pial-outer-smoothed','/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc',100,25,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: lh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: lh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 111316 face 10000 / 111316 face 15000 / 111316 face 20000 / 111316 face 25000 / 111316 face 30000 / 111316 face 35000 / 111316 face 40000 / 111316 face 45000 / 111316 face 50000 / 111316 face 55000 / 111316 face 60000 / 111316 face 65000 / 111316 face 70000 / 111316 face 75000 / 111316 face 80000 / 111316 face 85000 / 111316 face 90000 / 111316 face 95000 / 111316 face 100000 / 111316 face 105000 / 111316 face 110000 / 111316 reading normals info ... mesh_outer = vertices: [55660x3 double] faces: [111316x3 double] facesOfVertex: [55660x1 struct] vertexNormal: [55660x3 double] preparing pial mesh structure ... face 5000 / 218154 face 10000 / 218154 face 15000 / 218154 face 20000 / 218154 face 25000 / 218154 face 30000 / 218154 face 35000 / 218154 face 40000 / 218154 face 45000 / 218154 face 50000 / 218154 face 55000 / 218154 face 60000 / 218154 face 65000 / 218154 face 70000 / 218154 face 75000 / 218154 face 80000 / 218154 face 85000 / 218154 face 90000 / 218154 face 95000 / 218154 face 100000 / 218154 face 105000 / 218154 face 110000 / 218154 face 115000 / 218154 face 120000 / 218154 face 125000 / 218154 face 130000 / 218154 face 135000 / 218154 face 140000 / 218154 face 145000 / 218154 face 150000 / 218154 face 155000 / 218154 face 160000 / 218154 face 165000 / 218154 face 170000 / 218154 face 175000 / 218154 face 180000 / 218154 face 185000 / 218154 face 190000 / 218154 face 195000 / 218154 face 200000 / 218154 face 205000 / 218154 face 210000 / 218154 face 215000 / 218154 mesh_total = vertices: [109079x3 double] faces: [218154x3 double] facesOfVertex: [109079x1 struct] ...searching for mesh edges...done (104.40 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.5826 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 2.5747 lGI for vertex number 201 of the outer mesh is 2.4898 lGI for vertex number 301 of the outer mesh is 2.8555 lGI for vertex number 401 of the outer mesh is 2.5579 lGI for vertex number 501 of the outer mesh is 3.7232 lGI for vertex number 601 of the outer mesh is 3.37 lGI for vertex number 701 of the outer mesh is 2.4527 lGI for vertex number 801 of the outer mesh is 3.409 lGI for vertex number 901 of the outer mesh is 2.6712 lGI for vertex number 1001 of the outer mesh is 2.597 lGI for vertex number 1101 of the outer mesh is 2.6836 lGI for vertex number 1201 of the outer mesh is 2.9113 lGI for vertex number 1301 of the outer mesh is 2.5878 lGI for vertex number 1401 of the outer mesh is 2.6466 lGI for vertex number 1501 of the outer mesh is 2.5028 lGI for vertex number 1601 of the outer mesh is 2.6269 lGI for vertex number 1701 of the outer mesh is 3.7044 lGI for vertex number 1801 of the outer mesh is 2.5626 lGI for vertex number 1901 of the outer mesh is 2.7314 lGI for vertex number 2001 of the outer mesh is 3.5839 lGI for vertex number 2101 of the outer mesh is 3.1498 lGI for vertex number 2201 of the outer mesh is 2.7153 lGI for vertex number 2301 of the outer mesh is 2.8073 lGI for vertex number 2401 of the outer mesh is 2.9658 lGI for vertex number 2501 of the outer mesh is 3.7421 lGI for vertex number 2601 of the outer mesh is 2.8969 lGI for vertex number 2701 of the outer mesh is 2.9224 lGI for vertex number 2801 of the outer mesh is 3.5263 lGI for vertex number 2901 of the outer mesh is 2.6812 lGI for vertex number 3001 of the outer mesh is 3.222 lGI for vertex number 3101 of the outer mesh is 3.4648 lGI for vertex number 3201 of the outer mesh is 3.27 lGI for vertex number 3301 of the outer mesh is 3.5366 lGI for vertex number 3401 of the outer mesh is 3.7838 lGI for vertex number 3501 of the outer mesh is 2.531 lGI for vertex number 3601 of the outer mesh is 3.2757 lGI for vertex number 3701 of the outer mesh is 3.2607 lGI for vertex number 3801 of the outer mesh is 3.4227 lGI for vertex number 3901 of the outer mesh is 3.9958 lGI for vertex number 4001 of the outer mesh is 3.2297 lGI for vertex number 4101 of the outer mesh is 3.5072 lGI for vertex number 4201 of the outer mesh is 3.9244 lGI for vertex number 4301 of the outer mesh is 3.1285 lGI for vertex number 4401 of the outer mesh is 3.4499 lGI for vertex number 4501 of the outer mesh is 2.9979 lGI for vertex number 4601 of the outer mesh is 3.2746 lGI for vertex number 4701 of the outer mesh is 3.8347 lGI for vertex number 4801 of the outer mesh is 3.5425 lGI for vertex number 4901 of the outer mesh is 3.5096 lGI for vertex number 5001 of the outer mesh is 3.7359 lGI for vertex number 5101 of the outer mesh is 3.3848 lGI for vertex number 5201 of the outer mesh is 2.5206 lGI for vertex number 5301 of the outer mesh is 3.8755 lGI for vertex number 5401 of the outer mesh is 3.7437 lGI for vertex number 5501 of the outer mesh is 2.7278 lGI for vertex number 5601 of the outer mesh is 3.8122 lGI for vertex number 5701 of the outer mesh is 4.0908 lGI for vertex number 5801 of the outer mesh is 3.1854 lGI for vertex number 5901 of the outer mesh is 4.0559 lGI for vertex number 6001 of the outer mesh is 3.7715 lGI for vertex number 6101 of the outer mesh is 3.4553 lGI for vertex number 6201 of the outer mesh is 3.3149 lGI for vertex number 6301 of the outer mesh is 3.9429 lGI for vertex number 6401 of the outer mesh is 3.5198 lGI for vertex number 6501 of the outer mesh is 3.5778 lGI for vertex number 6601 of the outer mesh is 3.3496 lGI for vertex number 6701 of the outer mesh is 4.0029 lGI for vertex number 6801 of the outer mesh is 3.0378 lGI for vertex number 6901 of the outer mesh is 3.9206 lGI for vertex number 7001 of the outer mesh is 3.3979 lGI for vertex 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49901 of the outer mesh is 2.8937 lGI for vertex number 50001 of the outer mesh is 1.9903 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 2.4119 lGI for vertex number 50201 of the outer mesh is 3.4457 lGI for vertex number 50301 of the outer mesh is 2.0287 lGI for vertex number 50401 of the outer mesh is 2.1268 lGI for vertex number 50501 of the outer mesh is 3.6771 lGI for vertex number 50601 of the outer mesh is 1.8107 lGI for vertex number 50701 of the outer mesh is 2.2486 lGI for vertex number 50801 of the outer mesh is 3.5359 lGI for vertex number 50901 of the outer mesh is 2.0355 lGI for vertex number 51001 of the outer mesh is 2.1757 lGI for vertex number 51101 of the outer mesh is 3.2362 lGI for vertex number 51201 of the outer mesh is 1.8641 lGI for vertex number 51301 of the outer mesh is 2.3359 lGI for vertex number 51401 of the outer mesh is 3.09 lGI for vertex number 51501 of the outer mesh is 2.5116 lGI for vertex number 51601 of the outer mesh is 3.2587 lGI for vertex number 51701 of the outer mesh is 1.9885 lGI for vertex number 51801 of the outer mesh is 2.4242 lGI for vertex number 51901 of the outer mesh is 3.4673 lGI for vertex number 52001 of the outer mesh is 2.1283 lGI for vertex number 52101 of the outer mesh is 2.6071 lGI for vertex number 52201 of the outer mesh is 3.5603 lGI for vertex number 52301 of the outer mesh is 2.1433 lGI for vertex number 52401 of the outer mesh is 2.3255 lGI for vertex number 52501 of the outer mesh is 3.3937 lGI for vertex number 52601 of the outer mesh is 1.8827 lGI for vertex number 52701 of the outer mesh is 2.6169 lGI for vertex number 52801 of the outer mesh is 1.9714 lGI for vertex number 52901 of the outer mesh is 2.0215 lGI for vertex number 53001 of the outer mesh is 2.6019 lGI for vertex number 53101 of the outer mesh is 2.1721 lGI for vertex number 53201 of the outer mesh is 2.0776 lGI for vertex number 53301 of the outer mesh is 3.1672 lGI for vertex number 53401 of the outer mesh is 2.157 lGI for vertex number 53501 of the outer mesh is 2.7092 lGI for vertex number 53601 of the outer mesh is 3.0321 lGI for vertex number 53701 of the outer mesh is 2.1197 lGI for vertex number 53801 of the outer mesh is 2.0233 lGI for vertex number 53901 of the outer mesh is 3.1358 lGI for vertex number 54001 of the outer mesh is 2.1816 lGI for vertex number 54101 of the outer mesh is 2.6602 lGI for vertex number 54201 of the outer mesh is 2.6941 lGI for vertex number 54301 of the outer mesh is 2.2488 lGI for vertex number 54401 of the outer mesh is 2.5656 lGI for vertex number 54501 of the outer mesh is 2.3986 lGI for vertex number 54601 of the outer mesh is 2.2236 lGI for vertex number 54701 of the outer mesh is 2.693 lGI for vertex number 54801 of the outer mesh is 2.3899 lGI for vertex number 54901 of the outer mesh is 2.3064 lGI for vertex number 55001 of the outer mesh is 2.7361 lGI for vertex number 55101 of the outer mesh is 2.1023 lGI for vertex number 55201 of the outer mesh is 2.3496 lGI for vertex number 55301 of the outer mesh is 2.1807 lGI for vertex number 55401 of the outer mesh is 2.3261 lGI for vertex number 55501 of the outer mesh is 2.2639 lGI for vertex number 55601 of the outer mesh is 2.369 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.4462 DONE. deltaT = 915.1300 ================= mris_convert -c /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial/lh.pial_lgi.asc lh.pial lh.pial_lgi ================= ================= rm -Rf /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-lh.pial ================= done. Start: Fri Jun 17 16:59:31 CDT 2022 End: Fri Jun 17 17:43:04 CDT 2022 #-------------------------------------------- #@# Local Gyrification Index rh Fri Jun 17 17:43:04 CDT 2022 mris_compute_lgi --i rh.pial ================= rm -Rf /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial ================= ================= mkdir -p /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial ================= ================= mris_fill -c -r 1 rh.pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz ================= reading surface from rh.pial... writing filled volume to /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz... conforming output volume setting resolution for intermediate calculations to 1.0000 ================= make_outer_surface('/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.filled.mgz',15,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> reading filled volume... closing volume... morphological closing done. writing outer surface... ================= mris_extract_main_component /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-main ================= counting number of connected components... 56552 voxel in cpt #1: X=2 [v=56552,e=169650,f=113100] located at (24.986704, 0.071097, -0.261370) For the whole surface: X=2 [v=56552,e=169650,f=113100] One single component has been found nothing to do done ================= mris_smooth -nw -n 30 /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-main ./rh.pial-outer-smoothed ================= smoothing for 30 iterations smoothing surface tessellation for 30 iterations... smoothing complete - recomputing first and second fundamental forms... ================= mris_euler_number ./rh.pial-outer-smoothed ================= euler # = v-e+f = 2g-2: 56552 - 169650 + 113100 = 2 --> 0 holes F =2V-4: 113100 = 113104-4 (0) 2E=3F: 339300 = 339300 (0) total defect index = 0 ================= mris_convert -n rh.pial-outer-smoothed /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-smoothed-normals.asc ================= ================= find_corresponding_center_FSformat('rh.pial','rh.pial-outer-smoothed',100,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial','/tmp/mrc_23801_.m'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) deltaT = 21.1000 ================= make_roi_paths('rh.pial','rh.pial-outer-smoothed',25,100,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial','/tmp/mrp_23801_.m'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 113100 face 10000 / 113100 face 15000 / 113100 face 20000 / 113100 face 25000 / 113100 face 30000 / 113100 face 35000 / 113100 face 40000 / 113100 face 45000 / 113100 face 50000 / 113100 face 55000 / 113100 face 60000 / 113100 face 65000 / 113100 face 70000 / 113100 face 75000 / 113100 face 80000 / 113100 face 85000 / 113100 face 90000 / 113100 face 95000 / 113100 face 100000 / 113100 face 105000 / 113100 face 110000 / 113100 mesh_outer = vertices: [56552x3 double] faces: [113100x3 double] facesOfVertex: [56552x1 struct] preparing pial mesh structure ... ...searching for mesh edges...done (102.68 sec). ... creating path file for vertex 1 / 56552 area file for outer ROIs saved at 1 ... creating path file for vertex 101 / 56552 ... creating path file for vertex 201 / 56552 ... creating path file for vertex 301 / 56552 ... creating path file for vertex 401 / 56552 ... creating path file for vertex 501 / 56552 ... creating path file for vertex 601 / 56552 ... creating path file for vertex 701 / 56552 ... creating path file for vertex 801 / 56552 ... creating path file for vertex 901 / 56552 ... creating path file for vertex 1001 / 56552 ... creating path file for vertex 1101 / 56552 ... creating path file for vertex 1201 / 56552 ... creating path file for vertex 1301 / 56552 ... creating path file for vertex 1401 / 56552 ... creating path file for vertex 1501 / 56552 ... creating path file for vertex 1601 / 56552 ... creating path file for vertex 1701 / 56552 ... creating path file for vertex 1801 / 56552 ... creating path file for vertex 1901 / 56552 ... creating path file for vertex 2001 / 56552 ... creating path file for vertex 2101 / 56552 ... creating path file for vertex 2201 / 56552 ... creating path file for vertex 2301 / 56552 ... creating path file for vertex 2401 / 56552 ... creating path file for vertex 2501 / 56552 ... creating path file for vertex 2601 / 56552 ... creating path file for vertex 2701 / 56552 ... creating path file for vertex 2801 / 56552 ... creating path file for vertex 2901 / 56552 ... creating path file for vertex 3001 / 56552 ... creating path file for vertex 3101 / 56552 ... creating path file for vertex 3201 / 56552 ... creating path file for vertex 3301 / 56552 ... creating path file for vertex 3401 / 56552 ... creating path file for vertex 3501 / 56552 ... creating path file for vertex 3601 / 56552 ... creating path file for vertex 3701 / 56552 ... creating path file for vertex 3801 / 56552 ... creating path file for vertex 3901 / 56552 ... creating path file for vertex 4001 / 56552 ... creating path file for vertex 4101 / 56552 ... creating path file for vertex 4201 / 56552 ... creating path file for vertex 4301 / 56552 ... creating path file for vertex 4401 / 56552 ... creating path file for vertex 4501 / 56552 ... creating path file for vertex 4601 / 56552 ... creating path file for vertex 4701 / 56552 ... creating path file for vertex 4801 / 56552 ... creating path file for vertex 4901 / 56552 ... creating path file for vertex 5001 / 56552 area file for outer ROIs saved at 5001 ... creating path file for vertex 5101 / 56552 ... creating path file for vertex 5201 / 56552 ... creating path file for vertex 5301 / 56552 ... creating path file for vertex 5401 / 56552 ... creating path file for vertex 5501 / 56552 ... creating path file for vertex 5601 / 56552 ... creating path file for vertex 5701 / 56552 ... creating path file for vertex 5801 / 56552 ... creating path file for vertex 5901 / 56552 ... creating path file for vertex 6001 / 56552 ... creating path file for vertex 6101 / 56552 ... creating path file for vertex 6201 / 56552 ... creating path file for vertex 6301 / 56552 ... creating path file for vertex 6401 / 56552 ... creating path file for vertex 6501 / 56552 ... creating path file for vertex 6601 / 56552 ... creating path file for vertex 6701 / 56552 ... creating path file for vertex 6801 / 56552 ... creating path file for vertex 6901 / 56552 ... creating path file for vertex 7001 / 56552 ... creating path file for vertex 7101 / 56552 ... creating path file for vertex 7201 / 56552 ... creating path file for vertex 7301 / 56552 ... creating path file for vertex 7401 / 56552 ... creating path file for vertex 7501 / 56552 ... creating path file for vertex 7601 / 56552 ... creating path file for vertex 7701 / 56552 ... creating path file for vertex 7801 / 56552 ... creating path file for vertex 7901 / 56552 ... creating path file for vertex 8001 / 56552 ... creating path file for vertex 8101 / 56552 ... creating path file for vertex 8201 / 56552 ... creating path file for vertex 8301 / 56552 ... creating path file for vertex 8401 / 56552 ... creating path file for vertex 8501 / 56552 ... creating path file for vertex 8601 / 56552 ... creating path file for vertex 8701 / 56552 ... creating path file for vertex 8801 / 56552 ... creating path file for vertex 8901 / 56552 ... creating path file for vertex 9001 / 56552 ... creating path file for vertex 9101 / 56552 ... creating path file for vertex 9201 / 56552 ... creating path file for vertex 9301 / 56552 ... creating path file for vertex 9401 / 56552 ... creating path file for vertex 9501 / 56552 non geodesic regions removed from the patch ... creating path file for vertex 9601 / 56552 ... creating path file for vertex 9701 / 56552 ... creating path file for vertex 9801 / 56552 ... creating path file for vertex 9901 / 56552 ... creating path file for vertex 10001 / 56552 area file for outer ROIs saved at 10001 ... creating path file for vertex 10101 / 56552 ... creating path file for vertex 10201 / 56552 ... creating path file for vertex 10301 / 56552 ... creating path file for vertex 10401 / 56552 ... creating path file for vertex 10501 / 56552 ... creating path file for vertex 10601 / 56552 ... creating path file for vertex 10701 / 56552 ... creating path file for vertex 10801 / 56552 ... creating path file for vertex 10901 / 56552 ... creating path file for vertex 11001 / 56552 ... creating path file for vertex 11101 / 56552 ... creating path file for vertex 11201 / 56552 ... creating path file for vertex 11301 / 56552 ... creating path file for vertex 11401 / 56552 ... creating path file for vertex 11501 / 56552 ... creating path file for vertex 11601 / 56552 ... creating path file for vertex 11701 / 56552 ... creating path file for vertex 11801 / 56552 ... creating path file for vertex 11901 / 56552 ... creating path file for vertex 12001 / 56552 ... creating path file for vertex 12101 / 56552 ... creating path file for vertex 12201 / 56552 ... creating path file for vertex 12301 / 56552 ... creating path file for vertex 12401 / 56552 ... creating path file for vertex 12501 / 56552 ... creating path file for vertex 12601 / 56552 ... creating path file for vertex 12701 / 56552 ... creating path file for vertex 12801 / 56552 ... creating path file for vertex 12901 / 56552 ... creating path file for vertex 13001 / 56552 ... creating path file for vertex 13101 / 56552 ... creating path file for vertex 13201 / 56552 ... creating path file for vertex 13301 / 56552 ... creating path file for vertex 13401 / 56552 ... creating path file for vertex 13501 / 56552 ... creating path file for vertex 13601 / 56552 ... creating path file for vertex 13701 / 56552 ... creating path file for vertex 13801 / 56552 ... creating path file for vertex 13901 / 56552 ... creating path file for vertex 14001 / 56552 ... creating path file for vertex 14101 / 56552 ... creating path file for vertex 14201 / 56552 ... creating path file for vertex 14301 / 56552 ... creating path file for vertex 14401 / 56552 ... creating path file for vertex 14501 / 56552 ... creating path file for vertex 14601 / 56552 ... creating path file for vertex 14701 / 56552 ... creating path file for vertex 14801 / 56552 ... creating path file for vertex 14901 / 56552 ... creating path file for vertex 15001 / 56552 area file for outer ROIs saved at 15001 ... creating path file for vertex 15101 / 56552 ... creating path file for vertex 15201 / 56552 ... creating path file for vertex 15301 / 56552 ... creating path file for vertex 15401 / 56552 ... creating path file for vertex 15501 / 56552 ... creating path file for vertex 15601 / 56552 ... creating path file for vertex 15701 / 56552 ... creating path file for vertex 15801 / 56552 ... creating path file for vertex 15901 / 56552 ... creating path file for vertex 16001 / 56552 ... creating path file for vertex 16101 / 56552 ... creating path file for vertex 16201 / 56552 ... creating path file for vertex 16301 / 56552 ... creating path file for vertex 16401 / 56552 ... creating path file for vertex 16501 / 56552 ... creating path file for vertex 16601 / 56552 ... creating path file for vertex 16701 / 56552 ... creating path file for vertex 16801 / 56552 ... creating path file for vertex 16901 / 56552 ... creating path file for vertex 17001 / 56552 ... creating path file for vertex 17101 / 56552 ... creating path file for vertex 17201 / 56552 ... creating path file for vertex 17301 / 56552 ... creating path file for vertex 17401 / 56552 ... creating path file for vertex 17501 / 56552 ... creating path file for vertex 17601 / 56552 ... creating path file for vertex 17701 / 56552 ... creating path file for vertex 17801 / 56552 ... creating path file for vertex 17901 / 56552 ... creating path file for vertex 18001 / 56552 ... creating path file for vertex 18101 / 56552 ... creating path file for vertex 18201 / 56552 ... creating path file for vertex 18301 / 56552 ... creating path file for vertex 18401 / 56552 ... creating path file for vertex 18501 / 56552 ... creating path file for vertex 18601 / 56552 ... creating path file for vertex 18701 / 56552 ... creating path file for vertex 18801 / 56552 ... creating path file for vertex 18901 / 56552 ... creating path file for vertex 19001 / 56552 ... creating path file for vertex 19101 / 56552 ... creating path file for vertex 19201 / 56552 ... creating path file for vertex 19301 / 56552 ... creating path file for vertex 19401 / 56552 ... creating path file for vertex 19501 / 56552 ... creating path file for vertex 19601 / 56552 ... creating path file for vertex 19701 / 56552 ... creating path file for vertex 19801 / 56552 ... creating path file for vertex 19901 / 56552 ... creating path file for vertex 20001 / 56552 area file for outer ROIs saved at 20001 ... creating path file for vertex 20101 / 56552 ... creating path file for vertex 20201 / 56552 ... creating path file for vertex 20301 / 56552 ... creating path file for vertex 20401 / 56552 ... creating path file for vertex 20501 / 56552 ... creating path file for vertex 20601 / 56552 ... creating path file for vertex 20701 / 56552 ... creating path file for vertex 20801 / 56552 ... creating path file for vertex 20901 / 56552 ... creating path file for vertex 21001 / 56552 ... creating path file for vertex 21101 / 56552 ... creating path file for vertex 21201 / 56552 ... creating path file for vertex 21301 / 56552 ... creating path file for vertex 21401 / 56552 ... creating path file for vertex 21501 / 56552 ... creating path file for vertex 21601 / 56552 ... creating path file for vertex 21701 / 56552 ... creating path file for vertex 21801 / 56552 ... creating path file for vertex 21901 / 56552 ... creating path file for vertex 22001 / 56552 ... creating path file for vertex 22101 / 56552 ... creating path file for vertex 22201 / 56552 ... creating path file for vertex 22301 / 56552 ... creating path file for vertex 22401 / 56552 ... creating path file for vertex 22501 / 56552 ... creating path file for vertex 22601 / 56552 ... creating path file for vertex 22701 / 56552 ... creating path file for vertex 22801 / 56552 ... creating path file for vertex 22901 / 56552 ... creating path file for vertex 23001 / 56552 ... creating path file for vertex 23101 / 56552 ... creating path file for vertex 23201 / 56552 ... creating path file for vertex 23301 / 56552 ... creating path file for vertex 23401 / 56552 ... creating path file for vertex 23501 / 56552 ... creating path file for vertex 23601 / 56552 ... creating path file for vertex 23701 / 56552 ... creating path file for vertex 23801 / 56552 ... creating path file for vertex 23901 / 56552 ... creating path file for vertex 24001 / 56552 ... creating path file for vertex 24101 / 56552 ... creating path file for vertex 24201 / 56552 ... creating path file for vertex 24301 / 56552 ... creating path file for vertex 24401 / 56552 ... creating path file for vertex 24501 / 56552 ... creating path file for vertex 24601 / 56552 ... creating path file for vertex 24701 / 56552 ... creating path file for vertex 24801 / 56552 ... creating path file for vertex 24901 / 56552 ... creating path file for vertex 25001 / 56552 area file for outer ROIs saved at 25001 ... creating path file for vertex 25101 / 56552 ... creating path file for vertex 25201 / 56552 ... creating path file for vertex 25301 / 56552 ... creating path file for vertex 25401 / 56552 ... creating path file for vertex 25501 / 56552 ... creating path file for vertex 25601 / 56552 ... creating path file for vertex 25701 / 56552 ... creating path file for vertex 25801 / 56552 ... creating path file for vertex 25901 / 56552 ... creating path file for vertex 26001 / 56552 ... creating path file for vertex 26101 / 56552 ... creating path file for vertex 26201 / 56552 ... creating path file for vertex 26301 / 56552 ... creating path file for vertex 26401 / 56552 ... creating path file for vertex 26501 / 56552 ... creating path file for vertex 26601 / 56552 ... creating path file for vertex 26701 / 56552 ... creating path file for vertex 26801 / 56552 ... creating path file for vertex 26901 / 56552 ... creating path file for vertex 27001 / 56552 ... creating path file for vertex 27101 / 56552 ... creating path file for vertex 27201 / 56552 ... creating path file for vertex 27301 / 56552 ... creating path file for vertex 27401 / 56552 ... creating path file for vertex 27501 / 56552 ... creating path file for vertex 27601 / 56552 ... creating path file for vertex 27701 / 56552 ... creating path file for vertex 27801 / 56552 ... creating path file for vertex 27901 / 56552 ... creating path file for vertex 28001 / 56552 ... creating path file for vertex 28101 / 56552 ... creating path file for vertex 28201 / 56552 ... creating path file for vertex 28301 / 56552 ... creating path file for vertex 28401 / 56552 ... creating path file for vertex 28501 / 56552 ... creating path file for vertex 28601 / 56552 ... creating path file for vertex 28701 / 56552 ... creating path file for vertex 28801 / 56552 ... creating path file for vertex 28901 / 56552 ... creating path file for vertex 29001 / 56552 ... creating path file for vertex 29101 / 56552 ... creating path file for vertex 29201 / 56552 ... creating path file for vertex 29301 / 56552 ... creating path file for vertex 29401 / 56552 ... creating path file for vertex 29501 / 56552 ... creating path file for vertex 29601 / 56552 ... creating path file for vertex 29701 / 56552 ... creating path file for vertex 29801 / 56552 ... creating path file for vertex 29901 / 56552 ... creating path file for vertex 30001 / 56552 area file for outer ROIs saved at 30001 ... creating path file for vertex 30101 / 56552 ... creating path file for vertex 30201 / 56552 ... creating path file for vertex 30301 / 56552 ... creating path file for vertex 30401 / 56552 ... creating path file for vertex 30501 / 56552 ... creating path file for vertex 30601 / 56552 ... creating path file for vertex 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vertex 32801 / 56552 ... creating path file for vertex 32901 / 56552 ... creating path file for vertex 33001 / 56552 ... creating path file for vertex 33101 / 56552 ... creating path file for vertex 33201 / 56552 ... creating path file for vertex 33301 / 56552 ... creating path file for vertex 33401 / 56552 ... creating path file for vertex 33501 / 56552 ... creating path file for vertex 33601 / 56552 ... creating path file for vertex 33701 / 56552 ... creating path file for vertex 33801 / 56552 ... creating path file for vertex 33901 / 56552 ... creating path file for vertex 34001 / 56552 ... creating path file for vertex 34101 / 56552 ... creating path file for vertex 34201 / 56552 ... creating path file for vertex 34301 / 56552 ... creating path file for vertex 34401 / 56552 ... creating path file for vertex 34501 / 56552 ... creating path file for vertex 34601 / 56552 ... creating path file for vertex 34701 / 56552 ... creating path file for vertex 34801 / 56552 ... creating path file for vertex 34901 / 56552 ... creating path file for vertex 35001 / 56552 area file for outer ROIs saved at 35001 ... creating path file for vertex 35101 / 56552 ... creating path file for vertex 35201 / 56552 ... creating path file for vertex 35301 / 56552 ... creating path file for vertex 35401 / 56552 ... creating path file for vertex 35501 / 56552 ... creating path file for vertex 35601 / 56552 ... creating path file for vertex 35701 / 56552 ... creating path file for vertex 35801 / 56552 ... creating path file for vertex 35901 / 56552 ... creating path file for vertex 36001 / 56552 ... creating path file for vertex 36101 / 56552 ... creating path file for vertex 36201 / 56552 ... creating path file for vertex 36301 / 56552 ... creating path file for vertex 36401 / 56552 ... creating path file for vertex 36501 / 56552 ... creating path file for vertex 36601 / 56552 ... creating path file for vertex 36701 / 56552 ... creating path file for vertex 36801 / 56552 ... creating path file for vertex 36901 / 56552 ... creating path file for vertex 37001 / 56552 ... creating path file for vertex 37101 / 56552 ... creating path file for vertex 37201 / 56552 ... creating path file for vertex 37301 / 56552 ... creating path file for vertex 37401 / 56552 ... creating path file for vertex 37501 / 56552 ... creating path file for vertex 37601 / 56552 ... creating path file for vertex 37701 / 56552 ... creating path file for vertex 37801 / 56552 ... creating path file for vertex 37901 / 56552 ... creating path file for vertex 38001 / 56552 ... creating path file for vertex 38101 / 56552 ... creating path file for vertex 38201 / 56552 ... creating path file for vertex 38301 / 56552 ... creating path file for vertex 38401 / 56552 ... creating path file for vertex 38501 / 56552 ... creating path file for vertex 38601 / 56552 ... creating path file for vertex 38701 / 56552 ... creating path file for vertex 38801 / 56552 ... creating path file for vertex 38901 / 56552 ... creating path file for vertex 39001 / 56552 ... creating path file for vertex 39101 / 56552 ... creating path file for vertex 39201 / 56552 ... creating path file for vertex 39301 / 56552 ... creating path file for vertex 39401 / 56552 ... creating path file for vertex 39501 / 56552 ... creating path file for vertex 39601 / 56552 ... creating path file for vertex 39701 / 56552 ... creating path file for vertex 39801 / 56552 ... creating path file for vertex 39901 / 56552 ... creating path file for vertex 40001 / 56552 area file for outer ROIs saved at 40001 ... creating path file for vertex 40101 / 56552 ... creating path file for vertex 40201 / 56552 ... creating path file for vertex 40301 / 56552 ... creating path file for vertex 40401 / 56552 ... creating path file for vertex 40501 / 56552 ... creating path file for vertex 40601 / 56552 ... creating path file for vertex 40701 / 56552 ... creating path file for vertex 40801 / 56552 ... creating path file for vertex 40901 / 56552 ... creating path file for vertex 41001 / 56552 ... creating path file for vertex 41101 / 56552 ... creating path file for vertex 41201 / 56552 ... creating path file for vertex 41301 / 56552 ... creating path file for vertex 41401 / 56552 ... creating path file for vertex 41501 / 56552 ... creating path file for vertex 41601 / 56552 ... creating path file for vertex 41701 / 56552 ... creating path file for vertex 41801 / 56552 ... creating path file for vertex 41901 / 56552 ... creating path file for vertex 42001 / 56552 ... creating path file for vertex 42101 / 56552 ... creating path file for vertex 42201 / 56552 ... creating path file for vertex 42301 / 56552 ... creating path file for vertex 42401 / 56552 ... creating path file for vertex 42501 / 56552 ... creating path file for vertex 42601 / 56552 ... creating path file for vertex 42701 / 56552 ... creating path file for vertex 42801 / 56552 ... creating path file for vertex 42901 / 56552 ... creating path file for vertex 43001 / 56552 ... creating path file for vertex 43101 / 56552 ... creating path file for vertex 43201 / 56552 ... creating path file for vertex 43301 / 56552 ... creating path file for vertex 43401 / 56552 ... creating path file for vertex 43501 / 56552 ... creating path file for vertex 43601 / 56552 ... creating path file for vertex 43701 / 56552 ... creating path file for vertex 43801 / 56552 ... creating path file for vertex 43901 / 56552 ... creating path file for vertex 44001 / 56552 ... creating path file for vertex 44101 / 56552 ... creating path file for vertex 44201 / 56552 ... creating path file for vertex 44301 / 56552 ... creating path file for vertex 44401 / 56552 ... creating path file for vertex 44501 / 56552 ... creating path file for vertex 44601 / 56552 ... creating path file for vertex 44701 / 56552 ... creating path file for vertex 44801 / 56552 ... creating path file for vertex 44901 / 56552 ... creating path file for vertex 45001 / 56552 area file for outer ROIs saved at 45001 ... creating path file for vertex 45101 / 56552 ... creating path file for vertex 45201 / 56552 ... creating path file for vertex 45301 / 56552 ... creating path file for vertex 45401 / 56552 ... creating path file for vertex 45501 / 56552 ... creating path file for vertex 45601 / 56552 ... creating path file for vertex 45701 / 56552 ... creating path file for vertex 45801 / 56552 ... creating path file for vertex 45901 / 56552 ... creating path file for vertex 46001 / 56552 ... creating path file for vertex 46101 / 56552 ... creating path file for vertex 46201 / 56552 ... creating path file for vertex 46301 / 56552 ... creating path file for vertex 46401 / 56552 ... creating path file for vertex 46501 / 56552 ... creating path file for vertex 46601 / 56552 ... creating path file for vertex 46701 / 56552 ... creating path file for vertex 46801 / 56552 ... creating path file for vertex 46901 / 56552 ... creating path file for vertex 47001 / 56552 ... creating path file for vertex 47101 / 56552 non geodesic regions removed from the patch ... creating path file for vertex 47201 / 56552 ... creating path file for vertex 47301 / 56552 ... creating path file for vertex 47401 / 56552 ... creating path file for vertex 47501 / 56552 ... creating path file for vertex 47601 / 56552 ... creating path file for vertex 47701 / 56552 ... creating path file for vertex 47801 / 56552 ... creating path file for vertex 47901 / 56552 ... creating path file for vertex 48001 / 56552 ... creating path file for vertex 48101 / 56552 ... creating path file for vertex 48201 / 56552 ... creating path file for vertex 48301 / 56552 ... creating path file for vertex 48401 / 56552 ... creating path file for vertex 48501 / 56552 ... creating path file for vertex 48601 / 56552 ... creating path file for vertex 48701 / 56552 ... creating path file for vertex 48801 / 56552 ... creating path file for vertex 48901 / 56552 ... creating path file for vertex 49001 / 56552 ... creating path file for vertex 49101 / 56552 ... creating path file for vertex 49201 / 56552 ... creating path file for vertex 49301 / 56552 ... creating path file for vertex 49401 / 56552 ... creating path file for vertex 49501 / 56552 ... creating path file for vertex 49601 / 56552 ... creating path file for vertex 49701 / 56552 ... creating path file for vertex 49801 / 56552 ... creating path file for vertex 49901 / 56552 ... creating path file for vertex 50001 / 56552 area file for outer ROIs saved at 50001 ... creating path file for vertex 50101 / 56552 ... creating path file for vertex 50201 / 56552 ... creating path file for vertex 50301 / 56552 ... creating path file for vertex 50401 / 56552 ... creating path file for vertex 50501 / 56552 ... creating path file for vertex 50601 / 56552 ... creating path file for vertex 50701 / 56552 ... creating path file for vertex 50801 / 56552 ... creating path file for vertex 50901 / 56552 ... creating path file for vertex 51001 / 56552 ... creating path file for vertex 51101 / 56552 ... creating path file for vertex 51201 / 56552 ... creating path file for vertex 51301 / 56552 ... creating path file for vertex 51401 / 56552 ... creating path file for vertex 51501 / 56552 ... creating path file for vertex 51601 / 56552 ... creating path file for vertex 51701 / 56552 ... creating path file for vertex 51801 / 56552 ... creating path file for vertex 51901 / 56552 ... creating path file for vertex 52001 / 56552 ... creating path file for vertex 52101 / 56552 ... creating path file for vertex 52201 / 56552 ... creating path file for vertex 52301 / 56552 ... creating path file for vertex 52401 / 56552 ... creating path file for vertex 52501 / 56552 ... creating path file for vertex 52601 / 56552 ... creating path file for vertex 52701 / 56552 ... creating path file for vertex 52801 / 56552 ... creating path file for vertex 52901 / 56552 ... creating path file for vertex 53001 / 56552 ... creating path file for vertex 53101 / 56552 ... creating path file for vertex 53201 / 56552 ... creating path file for vertex 53301 / 56552 ... creating path file for vertex 53401 / 56552 ... creating path file for vertex 53501 / 56552 ... creating path file for vertex 53601 / 56552 ... creating path file for vertex 53701 / 56552 ... creating path file for vertex 53801 / 56552 ... creating path file for vertex 53901 / 56552 ... creating path file for vertex 54001 / 56552 ... creating path file for vertex 54101 / 56552 ... creating path file for vertex 54201 / 56552 ... creating path file for vertex 54301 / 56552 ... creating path file for vertex 54401 / 56552 ... creating path file for vertex 54501 / 56552 ... creating path file for vertex 54601 / 56552 ... creating path file for vertex 54701 / 56552 ... creating path file for vertex 54801 / 56552 ... creating path file for vertex 54901 / 56552 ... creating path file for vertex 55001 / 56552 area file for outer ROIs saved at 55001 ... creating path file for vertex 55101 / 56552 ... creating path file for vertex 55201 / 56552 ... creating path file for vertex 55301 / 56552 ... creating path file for vertex 55401 / 56552 ... creating path file for vertex 55501 / 56552 ... creating path file for vertex 55601 / 56552 ... creating path file for vertex 55701 / 56552 ... creating path file for vertex 55801 / 56552 ... creating path file for vertex 55901 / 56552 ... creating path file for vertex 56001 / 56552 ... creating path file for vertex 56101 / 56552 ... creating path file for vertex 56201 / 56552 ... creating path file for vertex 56301 / 56552 ... creating path file for vertex 56401 / 56552 ... creating path file for vertex 56501 / 56552 saving area file in matlab format... DONE. deltaT = 1.5869e+03 ================= mri_path2label --confillxfn rh.pial /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/mri_path2label.input ================= Reading rh.pial Connecting and filling vertices in path at fillseed 247 Finding path............................................................................................................................................................................................................................... done Filling 247 nlabel 5503 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000001.label Connecting and filling vertices in path at fillseed 66 Finding path................................................................................................................................................................................................................................................................................... done Filling 66 nlabel 5885 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000101.label Connecting and filling vertices in path at fillseed 90165 Finding path..................................................................................................................................... done Filling 90165 nlabel 4238 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000201.label Connecting and filling vertices in path at fillseed 104867 Finding path................................................................................................................................... done Filling 104867 nlabel 4678 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000301.label Connecting and filling vertices in path at fillseed 92389 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 92389 nlabel 5906 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000401.label Connecting and filling vertices in path at fillseed 369 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 369 nlabel 6922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000501.label Connecting and filling vertices in path at fillseed 98773 Finding path............................................................................................................................................ done Filling 98773 nlabel 4288 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000601.label Connecting and filling vertices in path at fillseed 90261 Finding path.................................................................................................. done Filling 90261 nlabel 4044 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000701.label Connecting and filling vertices in path at fillseed 522 Finding path.................................................................................................................................................................................................................... done Filling 522 nlabel 6660 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000801.label Connecting and filling vertices in path at fillseed 89507 Finding path............................................................................................................. done Filling 89507 nlabel 4567 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.000901.label Connecting and filling vertices in path at fillseed 215 Finding path......................................................................................................................................................................................................................... done Filling 215 nlabel 5891 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001001.label Connecting and filling vertices in path at fillseed 127 Finding path.................................................................................................................................. done Filling 127 nlabel 5131 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001101.label Connecting and filling vertices in path at fillseed 781 Finding path......................................................................................................... done Filling 781 nlabel 4043 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001201.label Connecting and filling vertices in path at fillseed 838 Finding path............................................................................................................................................................................................................... done Filling 838 nlabel 6894 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001301.label Connecting and filling vertices in path at fillseed 656 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 656 nlabel 7020 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001401.label Connecting and filling vertices in path at fillseed 92889 Finding path................................................................................................................................................................................. done Filling 92889 nlabel 4087 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001501.label Connecting and filling vertices in path at fillseed 1017 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 1017 nlabel 7319 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001601.label Connecting and filling vertices in path at fillseed 867 Finding path................................................................................................................................................................. done Filling 867 nlabel 4610 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001701.label Connecting and filling vertices in path at fillseed 884 Finding path...................................................................................................................................................................................................................................................................................... done Filling 884 nlabel 6181 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001801.label Connecting and filling vertices in path at fillseed 2489 Finding path..................................................................................................................................................................... done Filling 2489 nlabel 4948 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.001901.label Connecting and filling vertices in path at fillseed 1274 Finding path....................................................................................................................................................................................................................................................................... done Filling 1274 nlabel 4610 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002001.label Connecting and filling vertices in path at fillseed 2361 Finding path............................................................................................................................................................................................................................................................................ done Filling 2361 nlabel 5924 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002101.label Connecting and filling vertices in path at fillseed 105333 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 105333 nlabel 6712 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002201.label Connecting and filling vertices in path at fillseed 98336 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98336 nlabel 6032 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002301.label Connecting and filling vertices in path at fillseed 2336 Finding path........................................................................................................................................................................................................................................................ done Filling 2336 nlabel 5835 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002401.label Connecting and filling vertices in path at fillseed 1206 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1206 nlabel 7300 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002501.label Connecting and filling vertices in path at fillseed 2656 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 2656 nlabel 7089 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002601.label Connecting and filling vertices in path at fillseed 2231 Finding path............................................................................................................................................................................................................................................................................... done Filling 2231 nlabel 6364 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002701.label Connecting and filling vertices in path at fillseed 1501 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 1501 nlabel 5025 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002801.label Connecting and filling vertices in path at fillseed 2624 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 2624 nlabel 6119 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.002901.label Connecting and filling vertices in path at fillseed 3458 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 3458 nlabel 7646 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003001.label Connecting and filling vertices in path at fillseed 3669 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3669 nlabel 6999 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003101.label Connecting and filling vertices in path at fillseed 2230 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 2230 nlabel 6959 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003201.label Connecting and filling vertices in path at fillseed 2571 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 2571 nlabel 5454 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003301.label Connecting and filling vertices in path at fillseed 88976 Finding path....................................................................................................................................................................................................................... done Filling 88976 nlabel 5584 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003401.label Connecting and filling vertices in path at fillseed 4542 Finding path......................................................................................................................................................................................................................................................................................... done Filling 4542 nlabel 7903 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003501.label Connecting and filling vertices in path at fillseed 3463 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 3463 nlabel 6369 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003601.label Connecting and filling vertices in path at fillseed 3989 Finding path....................................................................................................................................................................................................................................................................................................................................................................................... done Filling 3989 nlabel 8385 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003701.label Connecting and filling vertices in path at fillseed 5295 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 5295 nlabel 6429 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003801.label Connecting and filling vertices in path at fillseed 4188 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 4188 nlabel 6277 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.003901.label Connecting and filling vertices in path at fillseed 4783 Finding path................................................................................................................................................................................................................................................. done Filling 4783 nlabel 5903 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004001.label Connecting and filling vertices in path at fillseed 104847 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 104847 nlabel 6132 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004101.label Connecting and filling vertices in path at fillseed 3759 Finding path................................................................................................................................................................................................ done Filling 3759 nlabel 5180 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004201.label Connecting and filling vertices in path at fillseed 92758 Finding path........................................................................................................................................................... done Filling 92758 nlabel 4640 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004301.label Connecting and filling vertices in path at fillseed 6144 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6144 nlabel 7529 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004401.label Connecting and filling vertices in path at fillseed 5226 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 5226 nlabel 7809 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004501.label Connecting and filling vertices in path at fillseed 91579 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91579 nlabel 7284 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004601.label Connecting and filling vertices in path at fillseed 98023 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 98023 nlabel 8615 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004701.label Connecting and filling vertices in path at fillseed 6417 Finding path................................................................................................................................................................................................................................ done Filling 6417 nlabel 7259 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004801.label Connecting and filling vertices in path at fillseed 4876 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 4876 nlabel 8314 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.004901.label Connecting and filling vertices in path at fillseed 2735 Finding path........................................................................................................................................................... done Filling 2735 nlabel 5006 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005001.label Connecting and filling vertices in path at fillseed 6341 Finding path......................................................................................................................................................................................................................... done Filling 6341 nlabel 6143 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005101.label Connecting and filling vertices in path at fillseed 96600 Finding path.................................................................................................................................................................................................. done Filling 96600 nlabel 4659 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005201.label Connecting and filling vertices in path at fillseed 4930 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 4930 nlabel 7259 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005301.label Connecting and filling vertices in path at fillseed 6274 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 6274 nlabel 8769 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005401.label Connecting and filling vertices in path at fillseed 7117 Finding path........................................................................................................................................................................................................................................................................................ done Filling 7117 nlabel 6690 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005501.label Connecting and filling vertices in path at fillseed 7102 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 7102 nlabel 7007 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005601.label Connecting and filling vertices in path at fillseed 7763 Finding path............................................................................................................................................................................................................................................................................................................................................................................. done Filling 7763 nlabel 8149 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005701.label Connecting and filling vertices in path at fillseed 6804 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 6804 nlabel 7129 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005801.label Connecting and filling vertices in path at fillseed 5991 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 5991 nlabel 7336 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.005901.label Connecting and filling vertices in path at fillseed 5679 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 5679 nlabel 7263 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006001.label Connecting and filling vertices in path at fillseed 7035 Finding path............................................................................................................................................................................................................................................................................................................................................. done Filling 7035 nlabel 7723 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006101.label Connecting and filling vertices in path at fillseed 8319 Finding path................................................................................................................................................................................................................................................................................ done Filling 8319 nlabel 6403 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006201.label Connecting and filling vertices in path at fillseed 90661 Finding path.................................................................................................................................................................................................................................................. done Filling 90661 nlabel 4784 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006301.label Connecting and filling vertices in path at fillseed 7674 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 7674 nlabel 9127 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006401.label Connecting and filling vertices in path at fillseed 4868 Finding path.................................................................................................................................................................................. done Filling 4868 nlabel 6169 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006501.label Connecting and filling vertices in path at fillseed 9214 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9214 nlabel 7645 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006601.label Connecting and filling vertices in path at fillseed 5802 Finding path.................................................................................................................................................................................................................................................................................................... done Filling 5802 nlabel 9790 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006701.label Connecting and filling vertices in path at fillseed 4493 Finding path................................................................................................................................................................................................................... done Filling 4493 nlabel 5767 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006801.label Connecting and filling vertices in path at fillseed 8752 Finding path....................................................................................................................................................................................................................................................................................................................... done Filling 8752 nlabel 6689 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.006901.label Connecting and filling vertices in path at fillseed 5448 Finding path..................................................................................................................................................................................................................................................................................... done Filling 5448 nlabel 9948 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007001.label Connecting and filling vertices in path at fillseed 7853 Finding path................................................................................................................................................................................................................................................................................................................................................................................. done Filling 7853 nlabel 6637 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007101.label Connecting and filling vertices in path at fillseed 7904 Finding path........................................................................................................................................................................................................................................................... done Filling 7904 nlabel 6397 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007201.label Connecting and filling vertices in path at fillseed 5822 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 5822 nlabel 9577 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007301.label Connecting and filling vertices in path at fillseed 89706 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 89706 nlabel 8536 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007401.label Connecting and filling vertices in path at fillseed 10243 Finding path............................................................................................................................................................................................................................................................................................................................... done Filling 10243 nlabel 5451 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007501.label Connecting and filling vertices in path at fillseed 6743 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 6743 nlabel 6059 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007601.label Connecting and filling vertices in path at fillseed 7329 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 7329 nlabel 9880 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007701.label Connecting and filling vertices in path at fillseed 8578 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 8578 nlabel 8855 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007801.label Connecting and filling vertices in path at fillseed 10790 Finding path................................................................................................................................................................................................................ done Filling 10790 nlabel 6210 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.007901.label Connecting and filling vertices in path at fillseed 8679 Finding path............................................................................................................................................................................................................................................................................................................... done Filling 8679 nlabel 7099 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008001.label Connecting and filling vertices in path at fillseed 8062 Finding path.............................................................................................................................................................................................................................................................................................. done Filling 8062 nlabel 10030 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008101.label Connecting and filling vertices in path at fillseed 10782 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 10782 nlabel 5972 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008201.label Connecting and filling vertices in path at fillseed 12683 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 12683 nlabel 6551 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008301.label Connecting and filling vertices in path at fillseed 9722 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 9722 nlabel 4512 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008401.label Connecting and filling vertices in path at fillseed 90003 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 90003 nlabel 7183 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008501.label Connecting and filling vertices in path at fillseed 98644 Finding path..................................................................................................................................................................................................................................................... done Filling 98644 nlabel 6767 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008601.label Connecting and filling vertices in path at fillseed 12242 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 12242 nlabel 5740 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008701.label Connecting and filling vertices in path at fillseed 10614 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 10614 nlabel 9194 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008801.label Connecting and filling vertices in path at fillseed 94639 Finding path..................................................................................................................................................................................................................................................................................................................................................... done Filling 94639 nlabel 6756 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.008901.label Connecting and filling vertices in path at fillseed 9713 Finding path............................................................................................................................................................................................................................................................................. done Filling 9713 nlabel 6258 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009001.label Connecting and filling vertices in path at fillseed 12568 Finding path........................................................................................................................................................................................................................................................................................................................................................ done Filling 12568 nlabel 9322 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009101.label Connecting and filling vertices in path at fillseed 9061 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 9061 nlabel 8711 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009201.label Connecting and filling vertices in path at fillseed 12265 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 12265 nlabel 5825 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009301.label Connecting and filling vertices in path at fillseed 99384 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 99384 nlabel 5943 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009401.label Connecting and filling vertices in path at fillseed 12072 Finding path.......................................................................................................................................................................................................................................................................... done Filling 12072 nlabel 9394 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009501.label Connecting and filling vertices in path at fillseed 14192 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 14192 nlabel 6615 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009601.label Connecting and filling vertices in path at fillseed 10795 Finding path............................................................................................................................................................................................................................................................................................ done Filling 10795 nlabel 6759 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009701.label Connecting and filling vertices in path at fillseed 13018 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 13018 nlabel 8658 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009801.label Connecting and filling vertices in path at fillseed 14525 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 14525 nlabel 7938 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.009901.label Connecting and filling vertices in path at fillseed 15392 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15392 nlabel 8342 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010001.label Connecting and filling vertices in path at fillseed 12659 Finding path.................................................................................................................................................................................................................................................................................................................................................................................. done Filling 12659 nlabel 6847 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010101.label Connecting and filling vertices in path at fillseed 92460 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 92460 nlabel 9010 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010201.label Connecting and filling vertices in path at fillseed 16472 Finding path..................................................................................................................................................................................................................................................................................................................................................................... done Filling 16472 nlabel 7254 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010301.label Connecting and filling vertices in path at fillseed 13584 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 13584 nlabel 7341 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010401.label Connecting and filling vertices in path at fillseed 13982 Finding path............................................................................................................................................................................................................................................................................................................. done Filling 13982 nlabel 8326 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010501.label Connecting and filling vertices in path at fillseed 17492 Finding path........................................................................................................................................................................................................................................................ done Filling 17492 nlabel 8145 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010601.label Connecting and filling vertices in path at fillseed 15334 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 15334 nlabel 7666 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010701.label Connecting and filling vertices in path at fillseed 13132 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 13132 nlabel 5593 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010801.label Connecting and filling vertices in path at fillseed 12964 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 12964 nlabel 9600 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.010901.label Connecting and filling vertices in path at fillseed 91958 Finding path............................................................................................................................................................................................................................................................................................ done Filling 91958 nlabel 8002 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011001.label Connecting and filling vertices in path at fillseed 15334 Finding path................................................................................................................................................................................................................................................................................................................................................................ done Filling 15334 nlabel 7698 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011101.label Connecting and filling vertices in path at fillseed 16527 Finding path................................................................................................................................................................................................................................................................................................................................... done Filling 16527 nlabel 6357 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011201.label Connecting and filling vertices in path at fillseed 16756 Finding path................................................................................................................................................................................................................................................................... done Filling 16756 nlabel 9221 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011301.label Connecting and filling vertices in path at fillseed 17687 Finding path............................................................................................................................................................................................................................................................................................. done Filling 17687 nlabel 8465 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011401.label Connecting and filling vertices in path at fillseed 18340 Finding path............................................................................................................................................................................................................................ done Filling 18340 nlabel 6657 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011501.label Connecting and filling vertices in path at fillseed 15272 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 15272 nlabel 5169 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011601.label Connecting and filling vertices in path at fillseed 14727 Finding path.................................................................................................................................................................................................................................................................................................................... done Filling 14727 nlabel 5231 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011701.label Connecting and filling vertices in path at fillseed 16066 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 16066 nlabel 7823 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011801.label Connecting and filling vertices in path at fillseed 17803 Finding path.......................................................................................................................................................................................................................................................................................................................................... done Filling 17803 nlabel 7559 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.011901.label Connecting and filling vertices in path at fillseed 15830 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 15830 nlabel 8823 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012001.label Connecting and filling vertices in path at fillseed 19787 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 19787 nlabel 8126 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012101.label Connecting and filling vertices in path at fillseed 16610 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 16610 nlabel 8211 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012201.label Connecting and filling vertices in path at fillseed 17794 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 17794 nlabel 7239 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012301.label Connecting and filling vertices in path at fillseed 17451 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 17451 nlabel 9807 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012401.label Connecting and filling vertices in path at fillseed 19084 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 19084 nlabel 6283 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012501.label Connecting and filling vertices in path at fillseed 16582 Finding path...................................................................................................................................................................................................................................................................................................................................................................... done Filling 16582 nlabel 8596 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012601.label Connecting and filling vertices in path at fillseed 18284 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 18284 nlabel 8978 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012701.label Connecting and filling vertices in path at fillseed 18036 Finding path................................................................................................................................................................................................................................................................................................ done Filling 18036 nlabel 8870 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012801.label Connecting and filling vertices in path at fillseed 104417 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 104417 nlabel 6957 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.012901.label Connecting and filling vertices in path at fillseed 20557 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 20557 nlabel 7365 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013001.label Connecting and filling vertices in path at fillseed 17699 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 17699 nlabel 9606 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013101.label Connecting and filling vertices in path at fillseed 20889 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 20889 nlabel 9585 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013201.label Connecting and filling vertices in path at fillseed 21992 Finding path................................................................................................................................................................................................................................................................. done Filling 21992 nlabel 6198 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013301.label Connecting and filling vertices in path at fillseed 20553 Finding path................................................................................................................................................................................................................................................................................................................................................ done Filling 20553 nlabel 7580 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013401.label Connecting and filling vertices in path at fillseed 17671 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 17671 nlabel 9495 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013501.label Connecting and filling vertices in path at fillseed 21540 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 21540 nlabel 8886 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013601.label Connecting and filling vertices in path at fillseed 21911 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 21911 nlabel 6912 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013701.label Connecting and filling vertices in path at fillseed 22478 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 22478 nlabel 7615 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013801.label Connecting and filling vertices in path at fillseed 16546 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 16546 nlabel 5253 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.013901.label Connecting and filling vertices in path at fillseed 22267 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 22267 nlabel 9052 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014001.label Connecting and filling vertices in path at fillseed 22605 Finding path................................................................................................................................................................................................................................................................... done Filling 22605 nlabel 7145 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014101.label Connecting and filling vertices in path at fillseed 21770 Finding path................................................................................................................................................................................................................................................................................................. done Filling 21770 nlabel 7145 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014201.label Connecting and filling vertices in path at fillseed 22511 Finding path........................................................................................................................................................................................................................... done Filling 22511 nlabel 4997 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014301.label Connecting and filling vertices in path at fillseed 21685 Finding path........................................................................................................................................................................................................................................................................................................................................................................................ done Filling 21685 nlabel 8381 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014401.label Connecting and filling vertices in path at fillseed 20571 Finding path................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 20571 nlabel 8548 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014501.label Connecting and filling vertices in path at fillseed 17778 Finding path.............................................................................................................................................................................................................................................................................................................................................. done Filling 17778 nlabel 7235 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014601.label Connecting and filling vertices in path at fillseed 19123 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 19123 nlabel 9527 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014701.label Connecting and filling vertices in path at fillseed 21949 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 21949 nlabel 6271 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014801.label Connecting and filling vertices in path at fillseed 21760 Finding path.............................................................................................................................................................................................................................................................. done Filling 21760 nlabel 7369 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.014901.label Connecting and filling vertices in path at fillseed 92343 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 92343 nlabel 9792 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015001.label Connecting and filling vertices in path at fillseed 93167 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93167 nlabel 8343 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015101.label Connecting and filling vertices in path at fillseed 24661 Finding path..................................................................................................................................................................................................................................................................................... done Filling 24661 nlabel 5380 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015201.label Connecting and filling vertices in path at fillseed 23871 Finding path.................................................................................................................................................................................................................................................................................................................................................. done Filling 23871 nlabel 5876 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015301.label Connecting and filling vertices in path at fillseed 23660 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 23660 nlabel 10097 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015401.label Connecting and filling vertices in path at fillseed 89096 Finding path.................................................................................................................................................................................................................................................................................................................................................................... done Filling 89096 nlabel 6636 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015501.label Connecting and filling vertices in path at fillseed 21826 Finding path................................................................................................................................................................................................................................................................................... done Filling 21826 nlabel 7422 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015601.label Connecting and filling vertices in path at fillseed 25465 Finding path................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 25465 nlabel 9929 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015701.label Connecting and filling vertices in path at fillseed 23254 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 23254 nlabel 6448 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015801.label Connecting and filling vertices in path at fillseed 91502 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 91502 nlabel 7660 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.015901.label Connecting and filling vertices in path at fillseed 101802 Finding path................................................................................................................................................................................................... done Filling 101802 nlabel 6358 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016001.label Connecting and filling vertices in path at fillseed 23072 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 23072 nlabel 9100 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016101.label Connecting and filling vertices in path at fillseed 25218 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25218 nlabel 9909 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016201.label Connecting and filling vertices in path at fillseed 26245 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 26245 nlabel 6103 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016301.label Connecting and filling vertices in path at fillseed 26242 Finding path..................................................................................................................................................................................................................................................................................... done Filling 26242 nlabel 7654 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016401.label Connecting and filling vertices in path at fillseed 24724 Finding path.................................................................................................................................................................................................................................................................................... done Filling 24724 nlabel 6221 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016501.label Connecting and filling vertices in path at fillseed 25208 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25208 nlabel 12142 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016601.label Connecting and filling vertices in path at fillseed 26274 Finding path...................................................................................................................................................... done Filling 26274 nlabel 4251 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016701.label Connecting and filling vertices in path at fillseed 27420 Finding path........................................................................................................................................................................................................................................................ done Filling 27420 nlabel 6644 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016801.label Connecting and filling vertices in path at fillseed 28151 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 28151 nlabel 10388 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.016901.label Connecting and filling vertices in path at fillseed 24971 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24971 nlabel 5265 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017001.label Connecting and filling vertices in path at fillseed 25578 Finding path........................................................................................................................................................................................................................................................................................................................................................................................... done Filling 25578 nlabel 8264 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017101.label Connecting and filling vertices in path at fillseed 24533 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 24533 nlabel 9440 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017201.label Connecting and filling vertices in path at fillseed 100571 Finding path...................................................................................................................................................................................................................................................................................................................................... done Filling 100571 nlabel 10265 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017301.label Connecting and filling vertices in path at fillseed 27909 Finding path.......................................................................................................................................................................................................................................................................................... done Filling 27909 nlabel 6703 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017401.label Connecting and filling vertices in path at fillseed 24684 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24684 nlabel 8460 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017501.label Connecting and filling vertices in path at fillseed 26296 Finding path................................................................................................................................................................................................................................................................. done Filling 26296 nlabel 5189 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017601.label Connecting and filling vertices in path at fillseed 27706 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 27706 nlabel 8194 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017701.label Connecting and filling vertices in path at fillseed 23332 Finding path......................................................................................................................................................................................................................................................................... done Filling 23332 nlabel 6945 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017801.label Connecting and filling vertices in path at fillseed 30191 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 30191 nlabel 7585 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.017901.label Connecting and filling vertices in path at fillseed 104819 Finding path....................................................................................................................................................................................................................................... done Filling 104819 nlabel 4969 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018001.label Connecting and filling vertices in path at fillseed 29261 Finding path........................................................................................................................................................................................................................................................................................................................................ done Filling 29261 nlabel 9879 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018101.label Connecting and filling vertices in path at fillseed 24065 Finding path........................................................................................................................................................................................................................................................................ done Filling 24065 nlabel 6689 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018201.label Connecting and filling vertices in path at fillseed 30193 Finding path.................................................................................................................................................................................................................................................................................................................................... done Filling 30193 nlabel 8043 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018301.label Connecting and filling vertices in path at fillseed 31054 Finding path...................................................................................................................................................................... done Filling 31054 nlabel 4874 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018401.label Connecting and filling vertices in path at fillseed 29325 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 29325 nlabel 9923 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018501.label Connecting and filling vertices in path at fillseed 24065 Finding path.............................................................................................................................................................................................................................................................................. done Filling 24065 nlabel 6459 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018601.label Connecting and filling vertices in path at fillseed 31031 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 31031 nlabel 7959 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018701.label Connecting and filling vertices in path at fillseed 31053 Finding path....................................................................................................................................................................................................... done Filling 31053 nlabel 3979 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018801.label Connecting and filling vertices in path at fillseed 30569 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 30569 nlabel 7608 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.018901.label Connecting and filling vertices in path at fillseed 24854 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 24854 nlabel 7209 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019001.label Connecting and filling vertices in path at fillseed 105026 Finding path...................................................................................................................................................................................... done Filling 105026 nlabel 6363 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019101.label Connecting and filling vertices in path at fillseed 27323 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 27323 nlabel 10274 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019201.label Connecting and filling vertices in path at fillseed 29680 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29680 nlabel 7005 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019301.label Connecting and filling vertices in path at fillseed 34122 Finding path...................................................................................................................................................................................................................................................... done Filling 34122 nlabel 6915 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019401.label Connecting and filling vertices in path at fillseed 34367 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34367 nlabel 8301 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019501.label Connecting and filling vertices in path at fillseed 31826 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 31826 nlabel 8987 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019601.label Connecting and filling vertices in path at fillseed 28560 Finding path.................................................................................................................................................................................................... done Filling 28560 nlabel 6182 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019701.label Connecting and filling vertices in path at fillseed 34062 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34062 nlabel 7495 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019801.label Connecting and filling vertices in path at fillseed 34428 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 34428 nlabel 6551 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.019901.label Connecting and filling vertices in path at fillseed 97240 Finding path........................................................................................................................................................................................................................................................................................ done Filling 97240 nlabel 9360 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020001.label Connecting and filling vertices in path at fillseed 29387 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 29387 nlabel 9951 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020101.label Connecting and filling vertices in path at fillseed 34264 Finding path................................................................................................................................................................................................................................. done Filling 34264 nlabel 5380 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020201.label Connecting and filling vertices in path at fillseed 39531 Finding path........................................................................................................................................................................................................................................................................... done Filling 39531 nlabel 6587 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020301.label Connecting and filling vertices in path at fillseed 35097 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 35097 nlabel 9514 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020401.label Connecting and filling vertices in path at fillseed 98530 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98530 nlabel 10438 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020501.label Connecting and filling vertices in path at fillseed 32065 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 32065 nlabel 8373 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020601.label Connecting and filling vertices in path at fillseed 35259 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 35259 nlabel 7175 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020701.label Connecting and filling vertices in path at fillseed 95998 Finding path............................................................................................................................................................................................................................................................................................... done Filling 95998 nlabel 7621 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020801.label Connecting and filling vertices in path at fillseed 33960 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 33960 nlabel 9922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.020901.label Connecting and filling vertices in path at fillseed 34760 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 34760 nlabel 11393 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021001.label Connecting and filling vertices in path at fillseed 36106 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36106 nlabel 8995 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021101.label Connecting and filling vertices in path at fillseed 33329 Finding path.......................................................................................................................................................................................................................................................... done Filling 33329 nlabel 8995 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021201.label Connecting and filling vertices in path at fillseed 36004 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 36004 nlabel 6947 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021301.label Connecting and filling vertices in path at fillseed 37642 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 37642 nlabel 6607 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021401.label Connecting and filling vertices in path at fillseed 37337 Finding path............................................................................................................................................. done Filling 37337 nlabel 5149 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021501.label Connecting and filling vertices in path at fillseed 106781 Finding path........................................................................................................................................................................................................................................................................................................ done Filling 106781 nlabel 6462 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021601.label Connecting and filling vertices in path at fillseed 33609 Finding path......................................................................................................................................................................................... done Filling 33609 nlabel 6387 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021701.label Connecting and filling vertices in path at fillseed 37687 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37687 nlabel 10849 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021801.label Connecting and filling vertices in path at fillseed 38107 Finding path............................................................................................................................................................ done Filling 38107 nlabel 5778 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.021901.label Connecting and filling vertices in path at fillseed 107044 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 107044 nlabel 8562 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022001.label Connecting and filling vertices in path at fillseed 36984 Finding path......................................................................................................................................................................................... done Filling 36984 nlabel 6738 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022101.label Connecting and filling vertices in path at fillseed 36207 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 36207 nlabel 7049 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022201.label Connecting and filling vertices in path at fillseed 38821 Finding path............................................................................................................................................................................ done Filling 38821 nlabel 5248 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022301.label Connecting and filling vertices in path at fillseed 107553 Finding path.................................................................................................................................................................................................................................. done Filling 107553 nlabel 5732 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022401.label Connecting and filling vertices in path at fillseed 37690 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 37690 nlabel 8067 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022501.label Connecting and filling vertices in path at fillseed 36915 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 36915 nlabel 6704 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022601.label Connecting and filling vertices in path at fillseed 39566 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39566 nlabel 5661 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022701.label Connecting and filling vertices in path at fillseed 101069 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 101069 nlabel 9162 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022801.label Connecting and filling vertices in path at fillseed 39266 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 39266 nlabel 7329 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.022901.label Connecting and filling vertices in path at fillseed 37627 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 37627 nlabel 9730 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023001.label Connecting and filling vertices in path at fillseed 41097 Finding path..................................................................................................................................... done Filling 41097 nlabel 5491 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023101.label Connecting and filling vertices in path at fillseed 40251 Finding path................................................................................................................................................................................................................................................................................................................................................... done Filling 40251 nlabel 8567 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023201.label Connecting and filling vertices in path at fillseed 39586 Finding path................................................................................................................................................................................................................................................ done Filling 39586 nlabel 6557 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023301.label Connecting and filling vertices in path at fillseed 97686 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 97686 nlabel 13400 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023401.label Connecting and filling vertices in path at fillseed 97099 Finding path............................................................................................................................ done Filling 97099 nlabel 5140 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023501.label Connecting and filling vertices in path at fillseed 41060 Finding path................................................................................................................................................................................................................................................................................................................................ done Filling 41060 nlabel 8731 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023601.label Connecting and filling vertices in path at fillseed 42954 Finding path.................................................................................................................................................................................................... done Filling 42954 nlabel 6336 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023701.label Connecting and filling vertices in path at fillseed 38398 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 38398 nlabel 11074 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023801.label Connecting and filling vertices in path at fillseed 41994 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41994 nlabel 9900 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.023901.label Connecting and filling vertices in path at fillseed 42762 Finding path..................................................................................................................................................................................................................................................................................... done Filling 42762 nlabel 8294 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024001.label Connecting and filling vertices in path at fillseed 97363 Finding path......................................................................................................................................................................................................................................................................................................................... done Filling 97363 nlabel 5182 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024101.label Connecting and filling vertices in path at fillseed 44979 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 44979 nlabel 11749 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024201.label Connecting and filling vertices in path at fillseed 40506 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 40506 nlabel 9376 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024301.label Connecting and filling vertices in path at fillseed 42778 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 42778 nlabel 8288 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024401.label Connecting and filling vertices in path at fillseed 101039 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 101039 nlabel 6407 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024501.label Connecting and filling vertices in path at fillseed 91383 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91383 nlabel 11217 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024601.label Connecting and filling vertices in path at fillseed 41298 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41298 nlabel 8203 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024701.label Connecting and filling vertices in path at fillseed 46127 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 46127 nlabel 8171 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024801.label Connecting and filling vertices in path at fillseed 43664 Finding path........................................................................................................................................................................................................................................................................................................................ done Filling 43664 nlabel 5718 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.024901.label Connecting and filling vertices in path at fillseed 47210 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 47210 nlabel 10869 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025001.label Connecting and filling vertices in path at fillseed 47519 Finding path................................................................................................................................................................................................................... done Filling 47519 nlabel 5537 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025101.label Connecting and filling vertices in path at fillseed 42790 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 42790 nlabel 7528 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025201.label Connecting and filling vertices in path at fillseed 45894 Finding path........................................................................................................................................................................................................................................................................................................................... done Filling 45894 nlabel 8772 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025301.label Connecting and filling vertices in path at fillseed 44959 Finding path....................................................................................................................................................................................................................................................................................................................................................................... done Filling 44959 nlabel 7315 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025401.label Connecting and filling vertices in path at fillseed 46486 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 46486 nlabel 11390 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025501.label Connecting and filling vertices in path at fillseed 49680 Finding path............................................................................................................................................................... done Filling 49680 nlabel 5314 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025601.label Connecting and filling vertices in path at fillseed 41141 Finding path........................................................................................................................................................................................................................................................................................................................................................... done Filling 41141 nlabel 10343 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025701.label Connecting and filling vertices in path at fillseed 47417 Finding path......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 47417 nlabel 8026 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025801.label Connecting and filling vertices in path at fillseed 45649 Finding path............................................................................................................................................................................. done Filling 45649 nlabel 6713 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.025901.label Connecting and filling vertices in path at fillseed 41751 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 41751 nlabel 10582 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026001.label Connecting and filling vertices in path at fillseed 48947 Finding path........................................................................................................................................................................... done Filling 48947 nlabel 5455 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026101.label Connecting and filling vertices in path at fillseed 42819 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 42819 nlabel 10374 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026201.label Connecting and filling vertices in path at fillseed 46664 Finding path................................................................................................................................................................................................................................................................................................................................................................. done Filling 46664 nlabel 7945 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026301.label Connecting and filling vertices in path at fillseed 45620 Finding path............................................................................................................................................................................................................................... done Filling 45620 nlabel 6649 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026401.label Connecting and filling vertices in path at fillseed 44686 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 44686 nlabel 8631 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026501.label Connecting and filling vertices in path at fillseed 94110 Finding path............................................................................................................................................................................................................................................................................................................................. done Filling 94110 nlabel 4428 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026601.label Connecting and filling vertices in path at fillseed 46132 Finding path.......................................................................................................................................................................................................................................................................................................................... done Filling 46132 nlabel 7248 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026701.label Connecting and filling vertices in path at fillseed 47843 Finding path........................................................................................................................................................................................................ done Filling 47843 nlabel 6102 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026801.label Connecting and filling vertices in path at fillseed 46713 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 46713 nlabel 13024 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.026901.label Connecting and filling vertices in path at fillseed 51317 Finding path................................................................................................................................................ done Filling 51317 nlabel 4925 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027001.label Connecting and filling vertices in path at fillseed 45363 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 45363 nlabel 9471 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027101.label Connecting and filling vertices in path at fillseed 49526 Finding path............................................................................................................................................................................................................................................................................................................................................ done Filling 49526 nlabel 7947 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027201.label Connecting and filling vertices in path at fillseed 48664 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 48664 nlabel 13610 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027301.label Connecting and filling vertices in path at fillseed 44688 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 44688 nlabel 9544 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027401.label Connecting and filling vertices in path at fillseed 48959 Finding path............................................................................................................................................................................................................................................................................................................................................................................................. done Filling 48959 nlabel 10515 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027501.label Connecting and filling vertices in path at fillseed 104230 Finding path................................................................................................................................................................................................................................................................................................................................. done Filling 104230 nlabel 7923 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027601.label Connecting and filling vertices in path at fillseed 49455 Finding path............................................................................................................................................................................................................................................................................................. done Filling 49455 nlabel 8157 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027701.label Connecting and filling vertices in path at fillseed 90472 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 90472 nlabel 11602 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027801.label Connecting and filling vertices in path at fillseed 100763 Finding path.................................................................................................................................................. done Filling 100763 nlabel 4127 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.027901.label Connecting and filling vertices in path at fillseed 51313 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 51313 nlabel 7309 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028001.label Connecting and filling vertices in path at fillseed 52141 Finding path................................................................................................................................................................................................................................ done Filling 52141 nlabel 6122 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028101.label Connecting and filling vertices in path at fillseed 51720 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51720 nlabel 13337 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028201.label Connecting and filling vertices in path at fillseed 52066 Finding path.................................................................................................................................................................. done Filling 52066 nlabel 4008 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028301.label Connecting and filling vertices in path at fillseed 93443 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 93443 nlabel 6851 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028401.label Connecting and filling vertices in path at fillseed 51873 Finding path.............................................................................................................................................................................................................................................................................................................................. done Filling 51873 nlabel 7620 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028501.label Connecting and filling vertices in path at fillseed 51004 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51004 nlabel 12032 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028601.label Connecting and filling vertices in path at fillseed 52243 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52243 nlabel 9475 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028701.label Connecting and filling vertices in path at fillseed 49715 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 49715 nlabel 10531 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028801.label Connecting and filling vertices in path at fillseed 96031 Finding path.................................................................................................................................................................................................................................................................................................................................. done Filling 96031 nlabel 5388 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.028901.label Connecting and filling vertices in path at fillseed 104534 Finding path.......................................................................................................................................................... done Filling 104534 nlabel 5943 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029001.label Connecting and filling vertices in path at fillseed 51967 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51967 nlabel 5578 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029101.label Connecting and filling vertices in path at fillseed 52914 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 52914 nlabel 9565 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029201.label Connecting and filling vertices in path at fillseed 51315 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 51315 nlabel 7338 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029301.label Connecting and filling vertices in path at fillseed 53316 Finding path.................................................................................................................................................................................................................................................................................. done Filling 53316 nlabel 7295 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029401.label Connecting and filling vertices in path at fillseed 52352 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 52352 nlabel 11529 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029501.label Connecting and filling vertices in path at fillseed 50590 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 50590 nlabel 10771 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029601.label Connecting and filling vertices in path at fillseed 89150 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 89150 nlabel 7669 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029701.label Connecting and filling vertices in path at fillseed 55034 Finding path........................................................................................................................................................................................................................................................... done Filling 55034 nlabel 7105 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029801.label Connecting and filling vertices in path at fillseed 57159 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 57159 nlabel 12510 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.029901.label Connecting and filling vertices in path at fillseed 52844 Finding path................................................................................................................................................................................................ done Filling 52844 nlabel 3856 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030001.label Connecting and filling vertices in path at fillseed 57981 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 57981 nlabel 4518 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030101.label Connecting and filling vertices in path at fillseed 54753 Finding path.......................................................................................................................................................................................... done Filling 54753 nlabel 5842 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030201.label Connecting and filling vertices in path at fillseed 53264 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 53264 nlabel 14234 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030301.label Connecting and filling vertices in path at fillseed 52827 Finding path......................................................................................................................................................................... done Filling 52827 nlabel 4173 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030401.label Connecting and filling vertices in path at fillseed 52097 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 52097 nlabel 7655 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030501.label Connecting and filling vertices in path at fillseed 56566 Finding path....................................................................................................................................................................................................................................................................................................... done Filling 56566 nlabel 6846 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030601.label Connecting and filling vertices in path at fillseed 56473 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56473 nlabel 13254 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030701.label Connecting and filling vertices in path at fillseed 55363 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55363 nlabel 9644 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030801.label Connecting and filling vertices in path at fillseed 55285 Finding path................................................................................................................................................................................................................................................................................................... done Filling 55285 nlabel 9246 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.030901.label Connecting and filling vertices in path at fillseed 59128 Finding path................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59128 nlabel 8685 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031001.label Connecting and filling vertices in path at fillseed 57143 Finding path..................................................................................................................................................................................................................................................................................................... done Filling 57143 nlabel 7799 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031101.label Connecting and filling vertices in path at fillseed 55572 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 55572 nlabel 14585 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031201.label Connecting and filling vertices in path at fillseed 54556 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 54556 nlabel 10711 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031301.label Connecting and filling vertices in path at fillseed 56741 Finding path............................................................................................................................................................................................................................................................................. done Filling 56741 nlabel 7681 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031401.label Connecting and filling vertices in path at fillseed 57868 Finding path.................................................................................................................................................................................................................................................................................................................................................... done Filling 57868 nlabel 7067 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031501.label Connecting and filling vertices in path at fillseed 56464 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 56464 nlabel 13472 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031601.label Connecting and filling vertices in path at fillseed 59203 Finding path......................................................................................................................................................................... done Filling 59203 nlabel 4193 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031701.label Connecting and filling vertices in path at fillseed 59245 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................... done Filling 59245 nlabel 4877 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031801.label Connecting and filling vertices in path at fillseed 97059 Finding path............................................................................................................................................................................................................................................ done Filling 97059 nlabel 5655 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.031901.label Connecting and filling vertices in path at fillseed 58928 Finding path................................................................................................................................................................................................................... done Filling 58928 nlabel 6025 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032001.label Connecting and filling vertices in path at fillseed 99254 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 99254 nlabel 10064 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032101.label Connecting and filling vertices in path at fillseed 58055 Finding path......................................................................................................................................................................................................................................................................................................... done Filling 58055 nlabel 9989 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032201.label Connecting and filling vertices in path at fillseed 62778 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62778 nlabel 8070 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032301.label Connecting and filling vertices in path at fillseed 59527 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 59527 nlabel 6202 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032401.label Connecting and filling vertices in path at fillseed 60258 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 60258 nlabel 10479 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032501.label Connecting and filling vertices in path at fillseed 58064 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 58064 nlabel 10159 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032601.label Connecting and filling vertices in path at fillseed 61090 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61090 nlabel 5933 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032701.label Connecting and filling vertices in path at fillseed 59911 Finding path.................................................................................................................................................... done Filling 59911 nlabel 5549 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032801.label Connecting and filling vertices in path at fillseed 61396 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61396 nlabel 14372 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.032901.label Connecting and filling vertices in path at fillseed 62862 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 62862 nlabel 3349 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033001.label Connecting and filling vertices in path at fillseed 62283 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 62283 nlabel 5888 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033101.label Connecting and filling vertices in path at fillseed 60919 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60919 nlabel 7148 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033201.label Connecting and filling vertices in path at fillseed 62598 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62598 nlabel 14331 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033301.label Connecting and filling vertices in path at fillseed 61069 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61069 nlabel 4298 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033401.label Connecting and filling vertices in path at fillseed 57385 Finding path................................................................................................................................................................................................................................................................................ done Filling 57385 nlabel 8601 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033501.label Connecting and filling vertices in path at fillseed 89539 Finding path........................................................................................................................................................................................................................................................................................................................................................................ done Filling 89539 nlabel 6741 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033601.label Connecting and filling vertices in path at fillseed 61985 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61985 nlabel 14148 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033701.label Connecting and filling vertices in path at fillseed 59789 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 59789 nlabel 7553 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033801.label Connecting and filling vertices in path at fillseed 63508 Finding path................................................................................................................................................................................................................................................................................................................ done Filling 63508 nlabel 8985 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.033901.label Connecting and filling vertices in path at fillseed 59249 Finding path............................................................................................................................................................................................................................................................................................... done Filling 59249 nlabel 6612 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034001.label Connecting and filling vertices in path at fillseed 62337 Finding path.......................................................................................................................................................................................................................................................................... done Filling 62337 nlabel 4847 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034101.label Connecting and filling vertices in path at fillseed 62573 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 62573 nlabel 16393 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034201.label Connecting and filling vertices in path at fillseed 61069 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 61069 nlabel 4498 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034301.label Connecting and filling vertices in path at fillseed 63484 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 63484 nlabel 3852 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034401.label Connecting and filling vertices in path at fillseed 59856 Finding path................................................................................................................................................................................................................................................................................................. done Filling 59856 nlabel 6843 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034501.label Connecting and filling vertices in path at fillseed 95094 Finding path................................................................................................................................................................................................................................................................................................................................................................... done Filling 95094 nlabel 6666 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034601.label Connecting and filling vertices in path at fillseed 60669 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 60669 nlabel 14866 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034701.label Connecting and filling vertices in path at fillseed 104333 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 104333 nlabel 10446 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034801.label Connecting and filling vertices in path at fillseed 107746 Finding path........................................................................................................................................................................................................................................................................................... done Filling 107746 nlabel 5943 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.034901.label Connecting and filling vertices in path at fillseed 94016 Finding path............................................................................................................................................................................................................................................................................................ done Filling 94016 nlabel 5243 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035001.label Connecting and filling vertices in path at fillseed 98593 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 98593 nlabel 14042 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035101.label Connecting and filling vertices in path at fillseed 61818 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61818 nlabel 8330 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035201.label Connecting and filling vertices in path at fillseed 65421 Finding path.................................................................................................................................................................................................................................................................................................. done Filling 65421 nlabel 9186 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035301.label Connecting and filling vertices in path at fillseed 67887 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 67887 nlabel 6236 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035401.label Connecting and filling vertices in path at fillseed 64757 Finding path................................................................................................................................................. done Filling 64757 nlabel 4640 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035501.label Connecting and filling vertices in path at fillseed 61889 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 61889 nlabel 14444 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035601.label Connecting and filling vertices in path at fillseed 63988 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 63988 nlabel 2932 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035701.label Connecting and filling vertices in path at fillseed 64961 Finding path......................................................................................................................................................................................................................................................................................... done Filling 64961 nlabel 6367 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035801.label Connecting and filling vertices in path at fillseed 62960 Finding path..................................................................................................................................... done Filling 62960 nlabel 5330 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.035901.label Connecting and filling vertices in path at fillseed 60239 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 60239 nlabel 13891 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036001.label Connecting and filling vertices in path at fillseed 62263 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 62263 nlabel 6930 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036101.label Connecting and filling vertices in path at fillseed 64498 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64498 nlabel 4239 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036201.label Connecting and filling vertices in path at fillseed 67900 Finding path........................................................................................................................................................................................................................................................................................................................................................................... done Filling 67900 nlabel 5762 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036301.label Connecting and filling vertices in path at fillseed 94429 Finding path.............................................................................................................................................................................................................. done Filling 94429 nlabel 5299 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036401.label Connecting and filling vertices in path at fillseed 91739 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91739 nlabel 14674 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036501.label Connecting and filling vertices in path at fillseed 62466 Finding path................................................................................................................................................................................................................................................................................................................................................. done Filling 62466 nlabel 7526 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036601.label Connecting and filling vertices in path at fillseed 64498 Finding path............................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64498 nlabel 4296 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036701.label Connecting and filling vertices in path at fillseed 68449 Finding path................................................................................................................................................................................................ done Filling 68449 nlabel 5361 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036801.label Connecting and filling vertices in path at fillseed 68843 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 68843 nlabel 5722 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.036901.label Connecting and filling vertices in path at fillseed 66047 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66047 nlabel 8607 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037001.label Connecting and filling vertices in path at fillseed 64468 Finding path...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 64468 nlabel 6007 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037101.label Connecting and filling vertices in path at fillseed 66405 Finding path...................................................................................................................................................................................................................................................................................................... done Filling 66405 nlabel 6683 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037201.label Connecting and filling vertices in path at fillseed 68450 Finding path................................................................................................................................................................................................... done Filling 68450 nlabel 5301 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037301.label Connecting and filling vertices in path at fillseed 69828 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69828 nlabel 11066 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037401.label Connecting and filling vertices in path at fillseed 66350 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66350 nlabel 3234 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037501.label Connecting and filling vertices in path at fillseed 65385 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 65385 nlabel 5460 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037601.label Connecting and filling vertices in path at fillseed 68450 Finding path................................................................................................................................................................................................................ done Filling 68450 nlabel 5286 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037701.label Connecting and filling vertices in path at fillseed 91092 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 91092 nlabel 11600 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037801.label Connecting and filling vertices in path at fillseed 65870 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65870 nlabel 4439 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.037901.label Connecting and filling vertices in path at fillseed 66406 Finding path........................................................................................................................................................................................................................................................................................................... done Filling 66406 nlabel 6660 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038001.label Connecting and filling vertices in path at fillseed 68917 Finding path.............................................................................................................................................. done Filling 68917 nlabel 4789 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038101.label Connecting and filling vertices in path at fillseed 69858 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69858 nlabel 10423 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038201.label Connecting and filling vertices in path at fillseed 67559 Finding path..................................................................................................................................................................................................................................................................................................................................... done Filling 67559 nlabel 9590 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038301.label Connecting and filling vertices in path at fillseed 65385 Finding path................................................................................................................................................................................................................................................................................................................................................................................... done Filling 65385 nlabel 5271 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038401.label Connecting and filling vertices in path at fillseed 68935 Finding path......................................................................................................................................... done Filling 68935 nlabel 4922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038501.label Connecting and filling vertices in path at fillseed 69858 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69858 nlabel 10562 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038601.label Connecting and filling vertices in path at fillseed 66899 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 66899 nlabel 7474 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038701.label Connecting and filling vertices in path at fillseed 65877 Finding path.......................................................................................................................................................................................................................................................................................................................................................... done Filling 65877 nlabel 4998 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038801.label Connecting and filling vertices in path at fillseed 69893 Finding path....................................................................................................................... done Filling 69893 nlabel 4449 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.038901.label Connecting and filling vertices in path at fillseed 69073 Finding path.......................................................................................................................................... done Filling 69073 nlabel 5865 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039001.label Connecting and filling vertices in path at fillseed 101896 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 101896 nlabel 9225 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039101.label Connecting and filling vertices in path at fillseed 66921 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 66921 nlabel 4422 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039201.label Connecting and filling vertices in path at fillseed 70009 Finding path............................................................................................................................................................................................................................................ done Filling 70009 nlabel 5301 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039301.label Connecting and filling vertices in path at fillseed 107018 Finding path..................................................................................................................................................... done Filling 107018 nlabel 5443 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039401.label Connecting and filling vertices in path at fillseed 70960 Finding path.......................................................................................................................................................................................................................................................................................................... done Filling 70960 nlabel 8044 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039501.label Connecting and filling vertices in path at fillseed 97544 Finding path.................................................................................................................................................................................................................................................................................................................. done Filling 97544 nlabel 9278 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039601.label Connecting and filling vertices in path at fillseed 67944 Finding path............................................................................................................................................................................................................................................................................................................................................................................... done Filling 67944 nlabel 4989 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039701.label Connecting and filling vertices in path at fillseed 71304 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 71304 nlabel 5243 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039801.label Connecting and filling vertices in path at fillseed 69544 Finding path......................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69544 nlabel 5924 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.039901.label Connecting and filling vertices in path at fillseed 69887 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 69887 nlabel 9420 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040001.label Connecting and filling vertices in path at fillseed 67933 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 67933 nlabel 7353 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040101.label Connecting and filling vertices in path at fillseed 69636 Finding path..................................................................................................................................................................................... done Filling 69636 nlabel 5955 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040201.label Connecting and filling vertices in path at fillseed 70859 Finding path........................................................................................................................ done Filling 70859 nlabel 4881 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040301.label Connecting and filling vertices in path at fillseed 69869 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 69869 nlabel 9677 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040401.label Connecting and filling vertices in path at fillseed 68834 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 68834 nlabel 8937 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040501.label Connecting and filling vertices in path at fillseed 69291 Finding path......................................................................................................................................................................................................................................................................................................................................................................... done Filling 69291 nlabel 9528 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040601.label Connecting and filling vertices in path at fillseed 70000 Finding path........................................................................................................................................................................................................................................................................................ done Filling 70000 nlabel 7387 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040701.label Connecting and filling vertices in path at fillseed 71438 Finding path.............................................................................................................................................................................................................................. done Filling 71438 nlabel 4932 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040801.label Connecting and filling vertices in path at fillseed 71595 Finding path..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71595 nlabel 10597 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.040901.label Connecting and filling vertices in path at fillseed 69353 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 69353 nlabel 8644 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041001.label Connecting and filling vertices in path at fillseed 70020 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 70020 nlabel 8308 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041101.label Connecting and filling vertices in path at fillseed 70783 Finding path.......................................................................................................................................................................................................................................................................................................................................................................... done Filling 70783 nlabel 6453 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041201.label Connecting and filling vertices in path at fillseed 106986 Finding path............................................................................................................................................................................................................... done Filling 106986 nlabel 5785 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041301.label Connecting and filling vertices in path at fillseed 71617 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 71617 nlabel 11395 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041401.label Connecting and filling vertices in path at fillseed 75402 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 75402 nlabel 9414 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041501.label Connecting and filling vertices in path at fillseed 106799 Finding path......................................................................................................................................................................................................................................................................................................................................................... done Filling 106799 nlabel 6463 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041601.label Connecting and filling vertices in path at fillseed 72055 Finding path............................................................................................................................................................................... done Filling 72055 nlabel 5288 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041701.label Connecting and filling vertices in path at fillseed 72586 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 72586 nlabel 9511 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041801.label Connecting and filling vertices in path at fillseed 71803 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 71803 nlabel 9098 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.041901.label Connecting and filling vertices in path at fillseed 73198 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 73198 nlabel 6048 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042001.label Connecting and filling vertices in path at fillseed 72629 Finding path..................................................................................................................................................................................................................... done Filling 72629 nlabel 5591 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042101.label Connecting and filling vertices in path at fillseed 74901 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 74901 nlabel 10624 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042201.label Connecting and filling vertices in path at fillseed 71799 Finding path............................................................................................................................................................................................................................... done Filling 71799 nlabel 7721 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042301.label Connecting and filling vertices in path at fillseed 71780 Finding path.............................................................................................................................. done Filling 71780 nlabel 5072 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042401.label Connecting and filling vertices in path at fillseed 91669 Finding path...................................................................................................................................................................................................................................................................................................................................................................................... done Filling 91669 nlabel 4578 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042501.label Connecting and filling vertices in path at fillseed 107838 Finding path............................................................................................................................................................................................................................................................................................................................................................. done Filling 107838 nlabel 8214 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042601.label Connecting and filling vertices in path at fillseed 73209 Finding path......................................................................................................................................................... done Filling 73209 nlabel 4973 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042701.label Connecting and filling vertices in path at fillseed 73696 Finding path.............................................................................................................................................................................. done Filling 73696 nlabel 5060 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042801.label Connecting and filling vertices in path at fillseed 73372 Finding path............................................................................................................................................................................................................................................................. done Filling 73372 nlabel 7244 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.042901.label Connecting and filling vertices in path at fillseed 102755 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 102755 nlabel 7083 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043001.label Connecting and filling vertices in path at fillseed 75082 Finding path............................................................................................................................................... done Filling 75082 nlabel 5263 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043101.label Connecting and filling vertices in path at fillseed 74985 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74985 nlabel 5671 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043201.label Connecting and filling vertices in path at fillseed 77292 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 77292 nlabel 9522 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043301.label Connecting and filling vertices in path at fillseed 73653 Finding path......................................................................................................................................................................................................................................................................................................................................... done Filling 73653 nlabel 6254 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043401.label Connecting and filling vertices in path at fillseed 73939 Finding path.............................................................................................................................................................. done Filling 73939 nlabel 5397 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043501.label Connecting and filling vertices in path at fillseed 76191 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 76191 nlabel 9129 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043601.label Connecting and filling vertices in path at fillseed 73691 Finding path.............................................................................................................................................................................................................................................................................................................. done Filling 73691 nlabel 8342 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043701.label Connecting and filling vertices in path at fillseed 75511 Finding path.................................................................................................................. done Filling 75511 nlabel 4929 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043801.label Connecting and filling vertices in path at fillseed 76391 Finding path.............................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 76391 nlabel 5088 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.043901.label Connecting and filling vertices in path at fillseed 74198 Finding path............................................................................................................................................................................................ done Filling 74198 nlabel 7235 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044001.label Connecting and filling vertices in path at fillseed 74094 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 74094 nlabel 5900 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044101.label Connecting and filling vertices in path at fillseed 77917 Finding path................................................................................................................................................................................ done Filling 77917 nlabel 5429 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044201.label Connecting and filling vertices in path at fillseed 74838 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 74838 nlabel 10035 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044301.label Connecting and filling vertices in path at fillseed 74618 Finding path............................................................................................................................................................................................................. done Filling 74618 nlabel 8959 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044401.label Connecting and filling vertices in path at fillseed 100490 Finding path.......................................................................................................................................................................................................................................... done Filling 100490 nlabel 5587 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044501.label Connecting and filling vertices in path at fillseed 77079 Finding path.............................................................................................................................. done Filling 77079 nlabel 5164 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044601.label Connecting and filling vertices in path at fillseed 75189 Finding path........................................................................................................................................................................................................................................................................................... done Filling 75189 nlabel 6650 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044701.label Connecting and filling vertices in path at fillseed 100265 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 100265 nlabel 7733 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044801.label Connecting and filling vertices in path at fillseed 105955 Finding path..................................................................................................................................................... done Filling 105955 nlabel 4854 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.044901.label Connecting and filling vertices in path at fillseed 77918 Finding path................................................................................................................................................................................. done Filling 77918 nlabel 5323 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045001.label Connecting and filling vertices in path at fillseed 77500 Finding path....................................................................................................................................................................................................... done Filling 77500 nlabel 7109 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045101.label Connecting and filling vertices in path at fillseed 75959 Finding path........................................................................................................................................................................... done Filling 75959 nlabel 5657 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045201.label Connecting and filling vertices in path at fillseed 77685 Finding path.............................................................................................................................. done Filling 77685 nlabel 5097 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045301.label Connecting and filling vertices in path at fillseed 77871 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 77871 nlabel 4625 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045401.label Connecting and filling vertices in path at fillseed 103087 Finding path................................................................................................................................................................................................................................................................................................................. done Filling 103087 nlabel 7261 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045501.label Connecting and filling vertices in path at fillseed 78307 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78307 nlabel 6397 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045601.label Connecting and filling vertices in path at fillseed 96630 Finding path................................................................................................. done Filling 96630 nlabel 5226 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045701.label Connecting and filling vertices in path at fillseed 78667 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78667 nlabel 7280 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045801.label Connecting and filling vertices in path at fillseed 75968 Finding path............................................................................................................................................................................................................................................. done Filling 75968 nlabel 6598 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.045901.label Connecting and filling vertices in path at fillseed 77879 Finding path................................................................................................................... done Filling 77879 nlabel 4648 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046001.label Connecting and filling vertices in path at fillseed 78712 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 78712 nlabel 6412 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046101.label Connecting and filling vertices in path at fillseed 78864 Finding path........................................................................................................................................................................................................................................................................................................................................... done Filling 78864 nlabel 7231 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046201.label Connecting and filling vertices in path at fillseed 77404 Finding path............................................................................................................................................................................................................................ done Filling 77404 nlabel 5851 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046301.label Connecting and filling vertices in path at fillseed 77666 Finding path.................................................................................................................... done Filling 77666 nlabel 5041 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046401.label Connecting and filling vertices in path at fillseed 80069 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80069 nlabel 6607 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046501.label Connecting and filling vertices in path at fillseed 80538 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 80538 nlabel 5247 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046601.label Connecting and filling vertices in path at fillseed 78142 Finding path...................................................................................... done Filling 78142 nlabel 5101 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046701.label Connecting and filling vertices in path at fillseed 78772 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 78772 nlabel 4153 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046801.label Connecting and filling vertices in path at fillseed 79282 Finding path......................................................................................................................................................................................................................................................................................... done Filling 79282 nlabel 6983 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.046901.label Connecting and filling vertices in path at fillseed 78786 Finding path............................................................................................................................................... done Filling 78786 nlabel 4775 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047001.label Connecting and filling vertices in path at fillseed 79343 Finding path................................................................................................................... done Filling 79343 nlabel 4957 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047101.label Connecting and filling vertices in path at fillseed 80051 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80051 nlabel 6697 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047201.label Connecting and filling vertices in path at fillseed 81298 Finding path............................................................................................................................................... done Filling 81298 nlabel 6097 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047301.label Connecting and filling vertices in path at fillseed 80155 Finding path...................................................................................................................... done Filling 80155 nlabel 3986 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047401.label Connecting and filling vertices in path at fillseed 79919 Finding path.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 79919 nlabel 6659 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047501.label Connecting and filling vertices in path at fillseed 81003 Finding path................................................................................................................................................... done Filling 81003 nlabel 6252 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047601.label Connecting and filling vertices in path at fillseed 83231 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83231 nlabel 5276 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047701.label Connecting and filling vertices in path at fillseed 82498 Finding path.......................................................................................................................................................... done Filling 82498 nlabel 5205 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047801.label Connecting and filling vertices in path at fillseed 80871 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 80871 nlabel 7023 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.047901.label Connecting and filling vertices in path at fillseed 80911 Finding path....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 80911 nlabel 6203 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048001.label Connecting and filling vertices in path at fillseed 81524 Finding path............................................................................................................................................. done Filling 81524 nlabel 5998 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048101.label Connecting and filling vertices in path at fillseed 80389 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ done Filling 80389 nlabel 7329 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048201.label Connecting and filling vertices in path at fillseed 81573 Finding path............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81573 nlabel 7492 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048301.label Connecting and filling vertices in path at fillseed 80148 Finding path.......................................................................................................................................................... done Filling 80148 nlabel 4460 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048401.label Connecting and filling vertices in path at fillseed 82859 Finding path......................................................................................................................................... done Filling 82859 nlabel 5173 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048501.label Connecting and filling vertices in path at fillseed 81418 Finding path.................................................................................................................................................................................... done Filling 81418 nlabel 6524 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048601.label Connecting and filling vertices in path at fillseed 81236 Finding path.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 81236 nlabel 5874 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048701.label Connecting and filling vertices in path at fillseed 82736 Finding path................................................................................................. done Filling 82736 nlabel 4802 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048801.label Connecting and filling vertices in path at fillseed 82813 Finding path........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 82813 nlabel 7007 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.048901.label Connecting and filling vertices in path at fillseed 81640 Finding path.............................................................................................................................................................................. done Filling 81640 nlabel 5922 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049001.label Connecting and filling vertices in path at fillseed 82899 Finding path................................................................................................................................................................. done Filling 82899 nlabel 4659 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049101.label Connecting and filling vertices in path at fillseed 82660 Finding path.............................................................................................................................................................................................................................. done Filling 82660 nlabel 5896 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049201.label Connecting and filling vertices in path at fillseed 81669 Finding path................................................................................................................................................................................................... done Filling 81669 nlabel 6515 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049301.label Connecting and filling vertices in path at fillseed 81620 Finding path.................................................................................................................................................................................................................................................................................................................................................................. done Filling 81620 nlabel 4885 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049401.label Connecting and filling vertices in path at fillseed 82751 Finding path............................................................................................................... done Filling 82751 nlabel 4670 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049501.label Connecting and filling vertices in path at fillseed 83506 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... done Filling 83506 nlabel 4876 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049601.label Connecting and filling vertices in path at fillseed 82879 Finding path.......................................................................................................................................................................................... done Filling 82879 nlabel 5644 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049701.label Connecting and filling vertices in path at fillseed 107451 Finding path............................................................................................................................ done Filling 107451 nlabel 4692 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049801.label Connecting and filling vertices in path at fillseed 82325 Finding path...................................................................................................................... done Filling 82325 nlabel 6285 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.049901.label Connecting and filling vertices in path at fillseed 84731 Finding path.................................................................................................................................. done Filling 84731 nlabel 4269 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050001.label Connecting and filling vertices in path at fillseed 84463 Finding path............................................................................................................ done Filling 84463 nlabel 3864 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050101.label Connecting and filling vertices in path at fillseed 84762 Finding path.......................................................................................................................................... done Filling 84762 nlabel 4475 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050201.label Connecting and filling vertices in path at fillseed 98404 Finding path................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. done Filling 98404 nlabel 5195 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050301.label Connecting and filling vertices in path at fillseed 89323 Finding path................................................................................................................................................. done Filling 89323 nlabel 5037 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050401.label Connecting and filling vertices in path at fillseed 83077 Finding path.............................................................................................................................................................................. done Filling 83077 nlabel 5056 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050501.label Connecting and filling vertices in path at fillseed 82622 Finding path.................................................................................................................................... done Filling 82622 nlabel 6215 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050601.label Connecting and filling vertices in path at fillseed 85364 Finding path................................................................................................................................ done Filling 85364 nlabel 5570 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050701.label Connecting and filling vertices in path at fillseed 86677 Finding path............................................................................................................................................................. done Filling 86677 nlabel 5394 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050801.label Connecting and filling vertices in path at fillseed 84914 Finding path.......................................................................................................................................... done Filling 84914 nlabel 4948 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.050901.label Connecting and filling vertices in path at fillseed 84196 Finding path.................................................................................................................................................. done Filling 84196 nlabel 5980 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051001.label Connecting and filling vertices in path at fillseed 86634 Finding path................................................................................................................................................................................... done Filling 86634 nlabel 5043 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051101.label Connecting and filling vertices in path at fillseed 104895 Finding path..................................................................................................................................... done Filling 104895 nlabel 4308 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051201.label Connecting and filling vertices in path at fillseed 84698 Finding path............................................................................................................................................................ done Filling 84698 nlabel 4342 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051301.label Connecting and filling vertices in path at fillseed 85972 Finding path........................................................................................................................................ done Filling 85972 nlabel 4657 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051401.label Connecting and filling vertices in path at fillseed 86724 Finding path.................................................................................................................................................. done Filling 86724 nlabel 4225 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051501.label Connecting and filling vertices in path at fillseed 90573 Finding path.............................................................................................................................. done Filling 90573 nlabel 4585 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051601.label Connecting and filling vertices in path at fillseed 90957 Finding path.................................................................................................. done Filling 90957 nlabel 2998 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051701.label Connecting and filling vertices in path at fillseed 85512 Finding path........................................................................................................................................... done Filling 85512 nlabel 5296 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051801.label Connecting and filling vertices in path at fillseed 85136 Finding path.................................................................................................................................................................... done Filling 85136 nlabel 5467 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.051901.label Connecting and filling vertices in path at fillseed 91124 Finding path............................................................................................................................... done Filling 91124 nlabel 4032 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052001.label Connecting and filling vertices in path at fillseed 85318 Finding path.......................................................................................................................... done Filling 85318 nlabel 4777 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052101.label Connecting and filling vertices in path at fillseed 85401 Finding path................................................................................................................................................................................... done Filling 85401 nlabel 6182 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052201.label Connecting and filling vertices in path at fillseed 85712 Finding path............................................................................................................................................... done Filling 85712 nlabel 4210 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052301.label Connecting and filling vertices in path at fillseed 89969 Finding path.................................................................................................................. done Filling 89969 nlabel 5643 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052401.label Connecting and filling vertices in path at fillseed 94746 Finding path................................................................................................................................................................................................... done Filling 94746 nlabel 5267 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052501.label Connecting and filling vertices in path at fillseed 85983 Finding path....................................................................................................................................... done Filling 85983 nlabel 3449 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052601.label Connecting and filling vertices in path at fillseed 86344 Finding path....................................................................................................................................... done Filling 86344 nlabel 5091 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052701.label Connecting and filling vertices in path at fillseed 85192 Finding path................................................................................................................................................................ done Filling 85192 nlabel 5459 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052801.label Connecting and filling vertices in path at fillseed 86252 Finding path......................................................................................................................................................... done Filling 86252 nlabel 3846 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.052901.label Connecting and filling vertices in path at fillseed 87478 Finding path................................................................................................................. done Filling 87478 nlabel 3094 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053001.label Connecting and filling vertices in path at fillseed 85200 Finding path....................................................................................................... done Filling 85200 nlabel 5349 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053101.label Connecting and filling vertices in path at fillseed 85985 Finding path.................................................................................................................................... done Filling 85985 nlabel 3706 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053201.label Connecting and filling vertices in path at fillseed 87479 Finding path............................................................................................ done Filling 87479 nlabel 2645 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053301.label Connecting and filling vertices in path at fillseed 86456 Finding path..................................................................................................................................................... done Filling 86456 nlabel 3770 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053401.label Connecting and filling vertices in path at fillseed 87004 Finding path................................................................................................................................................................................ done Filling 87004 nlabel 3479 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053501.label Connecting and filling vertices in path at fillseed 86604 Finding path............................................................................................ done Filling 86604 nlabel 4527 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053601.label Connecting and filling vertices in path at fillseed 87038 Finding path.................................................................................................................................................................... done Filling 87038 nlabel 4931 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053701.label Connecting and filling vertices in path at fillseed 87717 Finding path................................................................................................................ done Filling 87717 nlabel 3654 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053801.label Connecting and filling vertices in path at fillseed 87110 Finding path.............................................................................. done Filling 87110 nlabel 4396 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.053901.label Connecting and filling vertices in path at fillseed 87665 Finding path................................................................................................................................................. done Filling 87665 nlabel 4729 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054001.label Connecting and filling vertices in path at fillseed 87940 Finding path............................................................................................................................................................... done Filling 87940 nlabel 3905 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054101.label Connecting and filling vertices in path at fillseed 87095 Finding path..................................................................................................... done Filling 87095 nlabel 5341 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054201.label Connecting and filling vertices in path at fillseed 87490 Finding path..................................................................................................................................................................... done Filling 87490 nlabel 4909 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054301.label Connecting and filling vertices in path at fillseed 88144 Finding path................................................................................................................................... done Filling 88144 nlabel 4456 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054401.label Connecting and filling vertices in path at fillseed 87095 Finding path.................................................................................................................................................................... done Filling 87095 nlabel 5118 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054501.label Connecting and filling vertices in path at fillseed 88096 Finding path.................................................................................................................................................................................. done Filling 88096 nlabel 4357 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054601.label Connecting and filling vertices in path at fillseed 88077 Finding path....................................................................................................... done Filling 88077 nlabel 3056 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054701.label Connecting and filling vertices in path at fillseed 91474 Finding path.......................................................................................................................... done Filling 91474 nlabel 4448 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054801.label Connecting and filling vertices in path at fillseed 88471 Finding path................................................................................................................... done Filling 88471 nlabel 4118 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.054901.label Connecting and filling vertices in path at fillseed 88269 Finding path.......................................................................................................................................................... done Filling 88269 nlabel 3898 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055001.label Connecting and filling vertices in path at fillseed 87788 Finding path............................................................................................................................................... done Filling 87788 nlabel 4436 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055101.label Connecting and filling vertices in path at fillseed 88582 Finding path............................................................................................................ done Filling 88582 nlabel 4045 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055201.label Connecting and filling vertices in path at fillseed 87789 Finding path................................................................................................................................. done Filling 87789 nlabel 3933 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055301.label Connecting and filling vertices in path at fillseed 88211 Finding path.................................................................................................... done Filling 88211 nlabel 3836 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055401.label Connecting and filling vertices in path at fillseed 88699 Finding path...................................................................................................................................... done Filling 88699 nlabel 3867 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055501.label Connecting and filling vertices in path at fillseed 88512 Finding path............................................................................................................................................................. done Filling 88512 nlabel 4229 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055601.label Connecting and filling vertices in path at fillseed 88205 Finding path........................................................................................................................................... done Filling 88205 nlabel 4595 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055701.label Connecting and filling vertices in path at fillseed 96014 Finding path.................................................................................................................... done Filling 96014 nlabel 3075 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055801.label Connecting and filling vertices in path at fillseed 88408 Finding path......................................................................................................................................... done Filling 88408 nlabel 5313 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.055901.label Connecting and filling vertices in path at fillseed 91419 Finding path.......................................................................................................................... done Filling 91419 nlabel 4325 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056001.label Connecting and filling vertices in path at fillseed 88677 Finding path.................................................................................................................................. done Filling 88677 nlabel 3425 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056101.label Connecting and filling vertices in path at fillseed 88399 Finding path.................................................................................................................... done Filling 88399 nlabel 4418 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056201.label Connecting and filling vertices in path at fillseed 88830 Finding path................................................................................................................. done Filling 88830 nlabel 3303 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056301.label Connecting and filling vertices in path at fillseed 88807 Finding path.......................................................................................................................... done Filling 88807 nlabel 4594 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056401.label Connecting and filling vertices in path at fillseed 98803 Finding path......................................................................................................................................... done Filling 98803 nlabel 3930 Saving label file /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial.056501.label ================= compute_lgi('rh.pial','rh.pial-outer-smoothed','/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial-outer-smoothed-normals.asc',100,25,'/data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial'); exit ================= Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2012 The MathWorks, Inc. R2012b (8.0.0.783) 64-bit (glnxa64) August 22, 2012 ---------------------------------------------------- Your MATLAB license will expire in 43 days. Please contact your system administrator or MathWorks to renew this license. ---------------------------------------------------- To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> loading datas ... ...reading surface file: rh.pial ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.02 sec) ...reading surface file: rh.pial-outer-smoothed ...reading triangle file ...adding 1 to face indices for matlab compatibility. ...done ( 0.01 sec) preparing outer mesh structure ... face 5000 / 113100 face 10000 / 113100 face 15000 / 113100 face 20000 / 113100 face 25000 / 113100 face 30000 / 113100 face 35000 / 113100 face 40000 / 113100 face 45000 / 113100 face 50000 / 113100 face 55000 / 113100 face 60000 / 113100 face 65000 / 113100 face 70000 / 113100 face 75000 / 113100 face 80000 / 113100 face 85000 / 113100 face 90000 / 113100 face 95000 / 113100 face 100000 / 113100 face 105000 / 113100 face 110000 / 113100 reading normals info ... mesh_outer = vertices: [56552x3 double] faces: [113100x3 double] facesOfVertex: [56552x1 struct] vertexNormal: [56552x3 double] preparing pial mesh structure ... face 5000 / 216316 face 10000 / 216316 face 15000 / 216316 face 20000 / 216316 face 25000 / 216316 face 30000 / 216316 face 35000 / 216316 face 40000 / 216316 face 45000 / 216316 face 50000 / 216316 face 55000 / 216316 face 60000 / 216316 face 65000 / 216316 face 70000 / 216316 face 75000 / 216316 face 80000 / 216316 face 85000 / 216316 face 90000 / 216316 face 95000 / 216316 face 100000 / 216316 face 105000 / 216316 face 110000 / 216316 face 115000 / 216316 face 120000 / 216316 face 125000 / 216316 face 130000 / 216316 face 135000 / 216316 face 140000 / 216316 face 145000 / 216316 face 150000 / 216316 face 155000 / 216316 face 160000 / 216316 face 165000 / 216316 face 170000 / 216316 face 175000 / 216316 face 180000 / 216316 face 185000 / 216316 face 190000 / 216316 face 195000 / 216316 face 200000 / 216316 face 205000 / 216316 face 210000 / 216316 face 215000 / 216316 mesh_total = vertices: [108160x3 double] faces: [216316x3 double] facesOfVertex: [108160x1 struct] ...searching for mesh edges...done (101.88 sec). loading outer area information... lGI for vertex number 1 of the outer mesh is 2.6105 ratio saved at 1 lGI for vertex number 101 of the outer mesh is 2.7091 lGI for vertex number 201 of the outer mesh is 2.4851 lGI for vertex number 301 of the outer mesh is 2.4888 lGI for vertex number 401 of the outer mesh is 2.8564 lGI for vertex number 501 of the outer mesh is 2.8854 lGI for vertex number 601 of the outer mesh is 2.501 lGI for vertex number 701 of the outer mesh is 2.5666 lGI for vertex number 801 of the outer mesh is 2.8159 lGI for vertex number 901 of the outer mesh is 2.7484 lGI for vertex number 1001 of the outer mesh is 2.7675 lGI for vertex number 1101 of the outer mesh is 2.8815 lGI for vertex number 1201 of the outer mesh is 2.6023 lGI for vertex number 1301 of the outer mesh is 2.9325 lGI for vertex number 1401 of the outer mesh is 3.4069 lGI for vertex number 1501 of the outer mesh is 2.3544 lGI for vertex number 1601 of the outer mesh is 3.1498 lGI for vertex number 1701 of the outer mesh is 2.4825 lGI for vertex number 1801 of the outer mesh is 2.8553 lGI for vertex number 1901 of the outer mesh is 2.7231 lGI for vertex number 2001 of the outer mesh is 2.4449 lGI for vertex number 2101 of the outer mesh is 2.8352 lGI for vertex number 2201 of the outer mesh is 2.8457 lGI for vertex number 2301 of the outer mesh is 2.9952 lGI for vertex number 2401 of the outer mesh is 2.7553 lGI for vertex number 2501 of the outer mesh is 3.3804 lGI for vertex number 2601 of the outer mesh is 3.207 lGI for vertex number 2701 of the outer mesh is 2.776 lGI for vertex number 2801 of the outer mesh is 2.5483 lGI for vertex number 2901 of the outer mesh is 2.8552 lGI for vertex number 3001 of the outer mesh is 3.0988 lGI for vertex number 3101 of the outer mesh is 3.1396 lGI for vertex number 3201 of the outer mesh is 3.0171 lGI for vertex number 3301 of the outer mesh is 2.6496 lGI for vertex number 3401 of the outer mesh is 2.9958 lGI for vertex number 3501 of the outer mesh is 3.1913 lGI for vertex number 3601 of the outer mesh is 2.9476 lGI for vertex number 3701 of the outer mesh is 3.6022 lGI for vertex number 3801 of the outer mesh is 2.897 lGI for vertex number 3901 of the outer mesh is 2.9174 lGI for vertex number 4001 of the outer mesh is 2.9409 lGI for vertex number 4101 of the outer mesh is 2.8093 lGI for vertex number 4201 of the outer mesh is 2.6612 lGI for vertex number 4301 of the outer mesh is 2.4019 lGI for vertex number 4401 of the outer mesh is 3.3437 lGI for vertex number 4501 of the outer mesh is 3.2986 lGI for vertex number 4601 of the outer mesh is 3.275 lGI for vertex number 4701 of the outer mesh is 3.8735 lGI for vertex number 4801 of the outer mesh is 3.2927 lGI for vertex number 4901 of the outer mesh is 3.5259 lGI for vertex number 5001 of the outer mesh is 2.5681 lGI for vertex number 5101 of the outer mesh is 3.0872 lGI for vertex number 5201 of the outer mesh is 2.5027 lGI for vertex number 5301 of the outer mesh is 3.2287 lGI for vertex number 5401 of the outer mesh is 3.798 lGI for vertex number 5501 of the outer mesh is 2.9677 lGI for vertex number 5601 of the outer mesh is 3.1745 lGI for vertex number 5701 of the outer mesh is 3.6764 lGI for vertex number 5801 of the outer mesh is 3.1304 lGI for vertex number 5901 of the outer mesh is 3.2013 lGI for vertex number 6001 of the outer mesh is 3.1923 lGI for vertex number 6101 of the outer mesh is 3.5282 lGI for vertex number 6201 of the outer mesh is 3.1238 lGI for vertex number 6301 of the outer mesh is 2.5738 lGI for vertex number 6401 of the outer mesh is 4.0487 lGI for vertex number 6501 of the outer mesh is 3.1132 lGI for vertex number 6601 of the outer mesh is 3.4089 lGI for vertex number 6701 of the outer mesh is 3.7909 lGI for vertex number 6801 of the outer mesh is 2.9834 lGI for vertex number 6901 of the outer mesh is 3.0525 lGI for vertex number 7001 of the outer mesh is 3.7256 lGI for vertex number 7101 of the outer mesh is 3.1559 lGI for vertex number 7201 of the outer mesh is 3.0404 lGI for vertex number 7301 of the outer mesh is 3.7517 lGI for vertex number 7401 of the outer mesh is 3.8396 lGI for vertex number 7501 of the outer mesh is 2.8057 lGI for vertex number 7601 of the outer mesh is 2.6177 lGI for vertex number 7701 of the outer mesh is 4.0304 lGI for vertex number 7801 of the outer mesh is 3.9779 lGI for vertex number 7901 of the outer mesh is 3.073 lGI for vertex number 8001 of the outer mesh is 3.2052 lGI for vertex number 8101 of the outer mesh is 4.0458 lGI for vertex number 8201 of the outer mesh is 2.9826 lGI for vertex number 8301 of the outer mesh is 3.0849 lGI for vertex number 8401 of the outer mesh is 2.6434 lGI for vertex number 8501 of the outer mesh is 3.3325 lGI for vertex number 8601 of the outer mesh is 3.2058 lGI for vertex number 8701 of the outer mesh is 2.8953 lGI for vertex number 8801 of the outer mesh is 3.9384 lGI for vertex number 8901 of the outer mesh is 3.1681 lGI for vertex number 9001 of the outer mesh is 2.7605 lGI for vertex number 9101 of the outer mesh is 3.8969 lGI for vertex number 9201 of the outer mesh is 3.984 lGI for vertex number 9301 of the outer mesh is 2.7927 lGI for vertex number 9401 of the outer mesh is 3.1076 lGI for vertex number 9501 of the outer mesh is 4.0745 lGI for vertex number 9601 of the outer mesh is 3.1811 lGI for vertex number 9701 of the outer mesh is 3.0727 lGI for vertex number 9801 of the outer mesh is 3.6125 lGI for vertex number 9901 of the outer mesh is 3.7553 lGI for vertex number 10001 of the outer mesh is 3.7205 ratio saved at 10001 lGI for vertex number 10101 of the outer mesh is 2.9792 lGI for vertex number 10201 of the outer mesh is 3.9698 lGI for vertex number 10301 of the outer mesh is 3.4464 lGI for vertex number 10401 of the outer mesh is 3.0675 lGI for vertex number 10501 of the outer mesh is 3.4793 lGI for vertex number 10601 of the outer mesh is 3.8072 lGI for vertex number 10701 of the outer mesh is 3.5291 lGI for vertex number 10801 of the outer mesh is 2.761 lGI for vertex number 10901 of the outer mesh is 4.1234 lGI for vertex number 11001 of the outer mesh is 3.7511 lGI for vertex number 11101 of the outer mesh is 3.5562 lGI for vertex number 11201 of the outer mesh is 3.1446 lGI for vertex number 11301 of the outer mesh is 3.8394 lGI for vertex number 11401 of the outer mesh is 3.9593 lGI for vertex number 11501 of the outer mesh is 3.1139 lGI for vertex number 11601 of the outer mesh is 2.8108 lGI for vertex number 11701 of the outer mesh is 2.6958 lGI for vertex number 11801 of the outer mesh is 3.546 lGI for vertex number 11901 of the outer mesh is 3.2697 lGI for vertex number 12001 of the outer mesh is 3.509 lGI for vertex number 12101 of the outer mesh is 3.9435 lGI for vertex number 12201 of the outer mesh is 3.7148 lGI for vertex number 12301 of the outer mesh is 3.1873 lGI for vertex number 12401 of the outer mesh is 4.3386 lGI for vertex number 12501 of the outer mesh is 3.0083 lGI for vertex number 12601 of the outer mesh is 3.847 lGI for vertex number 12701 of the outer mesh is 3.4791 lGI for vertex number 12801 of the outer mesh is 4.0075 lGI for vertex number 12901 of the outer mesh is 3.5309 lGI for vertex number 13001 of the outer mesh is 3.3125 lGI for vertex number 13101 of the outer mesh is 3.7167 lGI for vertex number 13201 of the outer mesh is 3.99 lGI for vertex number 13301 of the outer mesh is 2.9328 lGI for vertex number 13401 of the outer mesh is 3.4362 lGI for vertex number 13501 of the outer mesh is 3.6687 lGI for vertex number 13601 of the outer mesh is 4.3059 lGI for vertex number 13701 of the outer mesh is 3.2582 lGI for vertex number 13801 of the outer mesh is 3.4999 lGI for vertex number 13901 of the outer mesh is 2.7438 lGI for vertex number 14001 of the outer mesh is 4.3597 lGI for vertex number 14101 of the outer mesh is 3.2922 lGI for vertex number 14201 of the outer mesh is 3.2761 lGI for vertex number 14301 of the outer mesh is 2.4866 lGI for vertex number 14401 of the outer mesh is 3.9971 lGI for vertex number 14501 of the outer mesh is 3.7658 lGI for vertex number 14601 of the outer mesh is 3.2679 lGI for vertex number 14701 of the outer mesh is 4.1601 lGI for vertex number 14801 of the outer mesh is 3.0158 lGI for vertex number 14901 of the outer mesh is 3.1546 lGI for vertex number 15001 of the outer mesh is 3.7412 lGI for vertex number 15101 of the outer mesh is 4.0831 lGI for vertex number 15201 of the outer mesh is 2.9095 lGI for vertex number 15301 of the outer mesh is 2.6047 lGI for vertex number 15401 of the outer mesh is 3.9791 lGI for vertex number 15501 of the outer mesh is 3.2356 lGI for vertex number 15601 of the outer mesh is 3.3182 lGI for vertex number 15701 of the outer mesh is 3.5442 lGI for vertex number 15801 of the outer mesh is 2.8749 lGI for vertex number 15901 of the outer mesh is 3.7772 lGI for vertex number 16001 of the outer mesh is 2.8778 lGI for vertex number 16101 of the outer mesh is 3.1845 lGI for vertex number 16201 of the outer mesh is 4.6313 lGI for vertex number 16301 of the outer mesh is 3.1421 lGI for vertex number 16401 of the outer mesh is 2.9996 lGI for vertex number 16501 of the outer mesh is 2.761 lGI for vertex number 16601 of the outer mesh is 5.1986 lGI for vertex number 16701 of the outer mesh is 2.3566 lGI for vertex number 16801 of the outer mesh is 3.0114 lGI for vertex number 16901 of the outer mesh is 4.3491 lGI for vertex number 17001 of the outer mesh is 2.639 lGI for vertex number 17101 of the outer mesh is 3.6334 lGI for vertex number 17201 of the outer mesh is 3.2776 lGI for vertex number 17301 of the outer mesh is 4.2315 lGI for vertex number 17401 of the outer mesh is 3.4013 lGI for vertex number 17501 of the outer mesh is 3.7152 lGI for vertex number 17601 of the outer mesh is 2.5926 lGI for vertex number 17701 of the outer mesh is 3.8776 lGI for vertex number 17801 of the outer mesh is 3.2696 lGI for vertex number 17901 of the outer mesh is 2.9767 lGI for vertex number 18001 of the outer mesh is 2.4624 lGI for vertex number 18101 of the outer mesh is 3.9643 lGI for vertex number 18201 of the outer mesh is 3.1086 lGI for vertex number 18301 of the outer mesh is 3.0573 lGI for vertex number 18401 of the outer mesh is 2.4756 lGI for vertex number 18501 of the outer mesh is 4.5164 lGI for vertex number 18601 of the outer mesh is 2.9867 lGI for vertex number 18701 of the outer mesh is 3.1118 lGI for vertex number 18801 of the outer mesh is 2.1794 lGI for vertex number 18901 of the outer mesh is 3.5768 lGI for vertex number 19001 of the outer mesh is 3.2249 lGI for vertex number 19101 of the outer mesh is 2.7626 lGI for vertex number 19201 of the outer mesh is 3.4437 lGI for vertex number 19301 of the outer mesh is 3.1643 lGI for vertex number 19401 of the outer mesh is 3.431 lGI for vertex number 19501 of the outer mesh is 3.5245 lGI for vertex number 19601 of the outer mesh is 3.6262 lGI for vertex number 19701 of the outer mesh is 2.6687 lGI for vertex number 19801 of the outer mesh is 3.6731 lGI for vertex number 19901 of the outer mesh is 2.9814 lGI for vertex number 20001 of the outer mesh is 3.9352 ratio saved at 20001 lGI for vertex number 20101 of the outer mesh is 3.3145 lGI for vertex number 20201 of the outer mesh is 2.6686 lGI for vertex number 20301 of the outer mesh is 3.3527 lGI for vertex number 20401 of the outer mesh is 4.0151 lGI for vertex number 20501 of the outer mesh is 3.4066 lGI for vertex number 20601 of the outer mesh is 3.5577 lGI for vertex number 20701 of the outer mesh is 3.3024 lGI for vertex number 20801 of the outer mesh is 2.9088 lGI for vertex number 20901 of the outer mesh is 3.3013 lGI for vertex number 21001 of the outer mesh is 5.0535 lGI for vertex number 21101 of the outer mesh is 3.9716 lGI for vertex number 21201 of the outer mesh is 3.0647 lGI for vertex number 21301 of the outer mesh is 2.8564 lGI for vertex number 21401 of the outer mesh is 3.036 lGI for vertex number 21501 of the outer mesh is 2.3828 lGI for vertex number 21601 of the outer mesh is 2.8407 lGI for vertex number 21701 of the outer mesh is 2.8219 lGI for vertex number 21801 of the outer mesh is 4.6263 lGI for vertex number 21901 of the outer mesh is 2.5766 lGI for vertex number 22001 of the outer mesh is 2.6529 lGI for vertex number 22101 of the outer mesh is 2.8047 lGI for vertex number 22201 of the outer mesh is 3.2097 lGI for vertex number 22301 of the outer mesh is 2.3348 lGI for vertex number 22401 of the outer mesh is 2.7282 lGI for vertex number 22501 of the outer mesh is 3.2474 lGI for vertex number 22601 of the outer mesh is 2.9986 lGI for vertex number 22701 of the outer mesh is 2.4436 lGI for vertex number 22801 of the outer mesh is 2.9117 lGI for vertex number 22901 of the outer mesh is 2.732 lGI for vertex number 23001 of the outer mesh is 4.0958 lGI for vertex number 23101 of the outer mesh is 2.4299 lGI for vertex number 23201 of the outer mesh is 2.7762 lGI for vertex number 23301 of the outer mesh is 3.0525 lGI for vertex number 23401 of the outer mesh is 5.6719 lGI for vertex number 23501 of the outer mesh is 2.3945 lGI for vertex number 23601 of the outer mesh is 2.8802 lGI for vertex number 23701 of the outer mesh is 2.587 lGI for vertex number 23801 of the outer mesh is 4.6777 lGI for vertex number 23901 of the outer mesh is 4.0811 lGI for vertex number 24001 of the outer mesh is 2.8273 lGI for vertex number 24101 of the outer mesh is 1.9946 lGI for vertex number 24201 of the outer mesh is 5.1655 lGI for vertex number 24301 of the outer mesh is 3.9719 lGI for vertex number 24401 of the outer mesh is 2.8623 lGI for vertex number 24501 of the outer mesh is 2.4114 lGI for vertex number 24601 of the outer mesh is 4.9416 lGI for vertex number 24701 of the outer mesh is 3.4789 lGI for vertex number 24801 of the outer mesh is 2.949 lGI for vertex number 24901 of the outer mesh is 2.7119 lGI for vertex number 25001 of the outer mesh is 4.8309 lGI for vertex number 25101 of the outer mesh is 2.7086 lGI for vertex number 25201 of the outer mesh is 2.8961 lGI for vertex number 25301 of the outer mesh is 2.7488 lGI for vertex number 25401 of the outer mesh is 2.5583 lGI for vertex number 25501 of the outer mesh is 5.1138 lGI for vertex number 25601 of the outer mesh is 2.6973 lGI for vertex number 25701 of the outer mesh is 4.2968 lGI for vertex number 25801 of the outer mesh is 2.6819 lGI for vertex number 25901 of the outer mesh is 2.6504 lGI for vertex number 26001 of the outer mesh is 4.4875 lGI for vertex number 26101 of the outer mesh is 2.6511 lGI for vertex number 26201 of the outer mesh is 4.2866 lGI for vertex number 26301 of the outer mesh is 2.693 lGI for vertex number 26401 of the outer mesh is 2.8613 lGI for vertex number 26501 of the outer mesh is 3.7144 lGI for vertex number 26601 of the outer mesh is 2.1243 lGI for vertex number 26701 of the outer mesh is 2.9165 lGI for vertex number 26801 of the outer mesh is 2.3499 lGI for vertex number 26901 of the outer mesh is 5.2555 lGI for vertex number 27001 of the outer mesh is 2.3862 lGI for vertex number 27101 of the outer mesh is 3.7194 lGI for vertex number 27201 of the outer mesh is 2.7518 lGI for vertex number 27301 of the outer mesh is 5.8397 lGI for vertex number 27401 of the outer mesh is 3.8982 lGI for vertex number 27501 of the outer mesh is 4.2381 lGI for vertex number 27601 of the outer mesh is 2.7237 lGI for vertex number 27701 of the outer mesh is 2.6346 lGI for vertex number 27801 of the outer mesh is 4.7704 lGI for vertex number 27901 of the outer mesh is 2.0951 lGI for vertex number 28001 of the outer mesh is 2.8387 lGI for vertex number 28101 of the outer mesh is 2.5213 lGI for vertex number 28201 of the outer mesh is 5.5348 lGI for vertex number 28301 of the outer mesh is 2.1559 lGI for vertex number 28401 of the outer mesh is 2.8207 lGI for vertex number 28501 of the outer mesh is 2.5838 lGI for vertex number 28601 of the outer mesh is 5.0542 lGI for vertex number 28701 of the outer mesh is 3.9292 lGI for vertex number 28801 of the outer mesh is 4.2778 lGI for vertex number 28901 of the outer mesh is 2.476 lGI for vertex number 29001 of the outer mesh is 2.4828 lGI for vertex number 29101 of the outer mesh is 2.8242 lGI for vertex number 29201 of the outer mesh is 3.9105 lGI for vertex number 29301 of the outer mesh is 2.7589 lGI for vertex number 29401 of the outer mesh is 2.2158 lGI for vertex number 29501 of the outer mesh is 4.8017 lGI for vertex number 29601 of the outer mesh is 4.3066 lGI for vertex number 29701 of the outer mesh is 2.6687 lGI for vertex number 29801 of the outer mesh is 2.2225 lGI for vertex number 29901 of the outer mesh is 5.2326 lGI for vertex number 30001 of the outer mesh is 2.1837 ratio saved at 30001 lGI for vertex number 30101 of the outer mesh is 2.2109 lGI for vertex number 30201 of the outer mesh is 2.3414 lGI for vertex number 30301 of the outer mesh is 5.797 lGI for vertex number 30401 of the outer mesh is 2.3028 lGI for vertex number 30501 of the outer mesh is 3.3091 lGI for vertex number 30601 of the outer mesh is 2.3174 lGI for vertex number 30701 of the outer mesh is 5.6326 lGI for vertex number 30801 of the outer mesh is 3.9203 lGI for vertex number 30901 of the outer mesh is 3.7802 lGI for vertex number 31001 of the outer mesh is 2.9492 lGI for vertex number 31101 of the outer mesh is 2.3798 lGI for vertex number 31201 of the outer mesh is 5.9356 lGI for vertex number 31301 of the outer mesh is 4.2461 lGI for vertex number 31401 of the outer mesh is 3.1025 lGI for vertex number 31501 of the outer mesh is 2.3875 lGI for vertex number 31601 of the outer mesh is 5.7355 lGI for vertex number 31701 of the outer mesh is 2.2698 lGI for vertex number 31801 of the outer mesh is 2.5782 lGI for vertex number 31901 of the outer mesh is 2.538 lGI for vertex number 32001 of the outer mesh is 2.2244 lGI for vertex number 32101 of the outer mesh is 4.4168 lGI for vertex number 32201 of the outer mesh is 4.0413 lGI for vertex number 32301 of the outer mesh is 2.6373 lGI for vertex number 32401 of the outer mesh is 2.3679 lGI for vertex number 32501 of the outer mesh is 4.6581 lGI for vertex number 32601 of the outer mesh is 4.1459 lGI for vertex number 32701 of the outer mesh is 2.5383 lGI for vertex number 32801 of the outer mesh is 2.3852 lGI for vertex number 32901 of the outer mesh is 5.8199 lGI for vertex number 33001 of the outer mesh is 2.0592 lGI for vertex number 33101 of the outer mesh is 2.6187 lGI for vertex number 33201 of the outer mesh is 2.3615 lGI for vertex number 33301 of the outer mesh is 5.9016 lGI for vertex number 33401 of the outer mesh is 2.4102 lGI for vertex number 33501 of the outer mesh is 3.453 lGI for vertex number 33601 of the outer mesh is 2.3599 lGI for vertex number 33701 of the outer mesh is 5.7459 lGI for vertex number 33801 of the outer mesh is 3.6161 lGI for vertex number 33901 of the outer mesh is 3.7752 lGI for vertex number 34001 of the outer mesh is 2.8108 lGI for vertex number 34101 of the outer mesh is 2.3569 lGI for vertex number 34201 of the outer mesh is 6.5261 lGI for vertex number 34301 of the outer mesh is 2.5682 lGI for vertex number 34401 of the outer mesh is 2.4644 lGI for vertex number 34501 of the outer mesh is 2.9932 lGI for vertex number 34601 of the outer mesh is 2.3536 lGI for vertex number 34701 of the outer mesh is 5.8282 lGI for vertex number 34801 of the outer mesh is 4.146 lGI for vertex number 34901 of the outer mesh is 2.4892 lGI for vertex number 35001 of the outer mesh is 2.283 lGI for vertex number 35101 of the outer mesh is 5.8572 lGI for vertex number 35201 of the outer mesh is 3.4895 lGI for vertex number 35301 of the outer mesh is 3.8342 lGI for vertex number 35401 of the outer mesh is 2.3961 lGI for vertex number 35501 of the outer mesh is 1.6554 lGI for vertex number 35601 of the outer mesh is 5.6415 lGI for vertex number 35701 of the outer mesh is 1.9959 lGI for vertex number 35801 of the outer mesh is 2.629 lGI for vertex number 35901 of the outer mesh is 2.312 lGI for vertex number 36001 of the outer mesh is 5.6464 lGI for vertex number 36101 of the outer mesh is 3.3417 lGI for vertex number 36201 of the outer mesh is 2.6508 lGI for vertex number 36301 of the outer mesh is 2.486 lGI for vertex number 36401 of the outer mesh is 2.1653 lGI for vertex number 36501 of the outer mesh is 5.8947 lGI for vertex number 36601 of the outer mesh is 3.2175 lGI for vertex number 36701 of the outer mesh is 2.6377 lGI for vertex number 36801 of the outer mesh is 2.3594 lGI for vertex number 36901 of the outer mesh is 2.4198 lGI for vertex number 37001 of the outer mesh is 3.6556 lGI for vertex number 37101 of the outer mesh is 3.0927 lGI for vertex number 37201 of the outer mesh is 2.801 lGI for vertex number 37301 of the outer mesh is 2.3141 lGI for vertex number 37401 of the outer mesh is 4.7741 lGI for vertex number 37501 of the outer mesh is 1.9438 lGI for vertex number 37601 of the outer mesh is 2.6507 lGI for vertex number 37701 of the outer mesh is 2.3034 lGI for vertex number 37801 of the outer mesh is 4.9372 lGI for vertex number 37901 of the outer mesh is 2.6514 lGI for vertex number 38001 of the outer mesh is 2.7693 lGI for vertex number 38101 of the outer mesh is 2.1428 lGI for vertex number 38201 of the outer mesh is 4.555 lGI for vertex number 38301 of the outer mesh is 3.9196 lGI for vertex number 38401 of the outer mesh is 2.5519 lGI for vertex number 38501 of the outer mesh is 2.1845 lGI for vertex number 38601 of the outer mesh is 4.6467 lGI for vertex number 38701 of the outer mesh is 3.5939 lGI for vertex number 38801 of the outer mesh is 2.6004 lGI for vertex number 38901 of the outer mesh is 1.5863 lGI for vertex number 39001 of the outer mesh is 2.3226 lGI for vertex number 39101 of the outer mesh is 4.1889 lGI for vertex number 39201 of the outer mesh is 2.6028 lGI for vertex number 39301 of the outer mesh is 2.4415 lGI for vertex number 39401 of the outer mesh is 2.2994 lGI for vertex number 39501 of the outer mesh is 3.432 lGI for vertex number 39601 of the outer mesh is 3.9012 lGI for vertex number 39701 of the outer mesh is 2.6499 lGI for vertex number 39801 of the outer mesh is 2.6169 lGI for vertex number 39901 of the outer mesh is 2.0312 lGI for vertex number 40001 of the outer mesh is 4.1864 ratio saved at 40001 lGI for vertex number 40101 of the outer mesh is 3.42 lGI for vertex number 40201 of the outer mesh is 2.5963 lGI for vertex number 40301 of the outer mesh is 2.1717 lGI for vertex number 40401 of the outer mesh is 4.3216 lGI for vertex number 40501 of the outer mesh is 3.942 lGI for vertex number 40601 of the outer mesh is 3.9411 lGI for vertex number 40701 of the outer mesh is 3.101 lGI for vertex number 40801 of the outer mesh is 2.1854 lGI for vertex number 40901 of the outer mesh is 4.7027 lGI for vertex number 41001 of the outer mesh is 3.7462 lGI for vertex number 41101 of the outer mesh is 3.7839 lGI for vertex number 41201 of the outer mesh is 2.5935 lGI for vertex number 41301 of the outer mesh is 2.5168 lGI for vertex number 41401 of the outer mesh is 4.9758 lGI for vertex number 41501 of the outer mesh is 4.1953 lGI for vertex number 41601 of the outer mesh is 2.5838 lGI for vertex number 41701 of the outer mesh is 2.1764 lGI for vertex number 41801 of the outer mesh is 4.2535 lGI for vertex number 41901 of the outer mesh is 3.8918 lGI for vertex number 42001 of the outer mesh is 2.5476 lGI for vertex number 42101 of the outer mesh is 2.0805 lGI for vertex number 42201 of the outer mesh is 4.6069 lGI for vertex number 42301 of the outer mesh is 3.5292 lGI for vertex number 42401 of the outer mesh is 2.5017 lGI for vertex number 42501 of the outer mesh is 2.3648 lGI for vertex number 42601 of the outer mesh is 3.5752 lGI for vertex number 42701 of the outer mesh is 2.3499 lGI for vertex number 42801 of the outer mesh is 2.3421 lGI for vertex number 42901 of the outer mesh is 3.3295 lGI for vertex number 43001 of the outer mesh is 3.2872 lGI for vertex number 43101 of the outer mesh is 2.4007 lGI for vertex number 43201 of the outer mesh is 2.2045 lGI for vertex number 43301 of the outer mesh is 4.1398 lGI for vertex number 43401 of the outer mesh is 2.7996 lGI for vertex number 43501 of the outer mesh is 2.3669 lGI for vertex number 43601 of the outer mesh is 4.0175 lGI for vertex number 43701 of the outer mesh is 3.7781 lGI for vertex number 43801 of the outer mesh is 2.5018 lGI for vertex number 43901 of the outer mesh is 2.5313 lGI for vertex number 44001 of the outer mesh is 3.2943 lGI for vertex number 44101 of the outer mesh is 2.6784 lGI for vertex number 44201 of the outer mesh is 2.3643 lGI for vertex number 44301 of the outer mesh is 4.4601 lGI for vertex number 44401 of the outer mesh is 3.8578 lGI for vertex number 44501 of the outer mesh is 2.6232 lGI for vertex number 44601 of the outer mesh is 2.3772 lGI for vertex number 44701 of the outer mesh is 3.3031 lGI for vertex number 44801 of the outer mesh is 3.6319 lGI for vertex number 44901 of the outer mesh is 2.3896 lGI for vertex number 45001 of the outer mesh is 2.4045 lGI for vertex number 45101 of the outer mesh is 3.4409 lGI for vertex number 45201 of the outer mesh is 2.6226 lGI for vertex number 45301 of the outer mesh is 2.303 lGI for vertex number 45401 of the outer mesh is 2.3531 lGI for vertex number 45501 of the outer mesh is 3.3043 lGI for vertex number 45601 of the outer mesh is 2.5376 lGI for vertex number 45701 of the outer mesh is 2.3934 lGI for vertex number 45801 of the outer mesh is 3.723 lGI for vertex number 45901 of the outer mesh is 3.1558 lGI for vertex number 46001 of the outer mesh is 2.4123 lGI for vertex number 46101 of the outer mesh is 2.5615 lGI for vertex number 46201 of the outer mesh is 3.417 lGI for vertex number 46301 of the outer mesh is 2.6251 lGI for vertex number 46401 of the outer mesh is 2.319 lGI for vertex number 46501 of the outer mesh is 3.4896 lGI for vertex number 46601 of the outer mesh is 2.7949 lGI for vertex number 46701 of the outer mesh is 2.3651 lGI for vertex number 46801 of the outer mesh is 2.1602 lGI for vertex number 46901 of the outer mesh is 3.2724 lGI for vertex number 47001 of the outer mesh is 2.355 lGI for vertex number 47101 of the outer mesh is 2.3231 lGI for vertex number 47201 of the outer mesh is 3.5485 lGI for vertex number 47301 of the outer mesh is 2.8424 lGI for vertex number 47401 of the outer mesh is 2.1372 lGI for vertex number 47501 of the outer mesh is 3.4594 lGI for vertex number 47601 of the outer mesh is 3.0337 lGI for vertex number 47701 of the outer mesh is 2.6521 lGI for vertex number 47801 of the outer mesh is 2.1184 lGI for vertex number 47901 of the outer mesh is 3.6914 lGI for vertex number 48001 of the outer mesh is 2.6529 lGI for vertex number 48101 of the outer mesh is 2.2371 lGI for vertex number 48201 of the outer mesh is 3.7735 lGI for vertex number 48301 of the outer mesh is 3.6248 lGI for vertex number 48401 of the outer mesh is 2.3063 lGI for vertex number 48501 of the outer mesh is 2.1853 lGI for vertex number 48601 of the outer mesh is 3.4054 lGI for vertex number 48701 of the outer mesh is 2.7834 lGI for vertex number 48801 of the outer mesh is 2.3762 lGI for vertex number 48901 of the outer mesh is 3.6975 lGI for vertex number 49001 of the outer mesh is 2.8577 lGI for vertex number 49101 of the outer mesh is 2.1794 lGI for vertex number 49201 of the outer mesh is 3.1888 lGI for vertex number 49301 of the outer mesh is 3.2447 lGI for vertex number 49401 of the outer mesh is 2.3279 lGI for vertex number 49501 of the outer mesh is 2.2143 lGI for vertex number 49601 of the outer mesh is 2.8759 lGI for vertex number 49701 of the outer mesh is 2.5606 lGI for vertex number 49801 of the outer mesh is 2.1151 lGI for vertex number 49901 of the outer mesh is 3.3669 lGI for vertex number 50001 of the outer mesh is 2.3945 ratio saved at 50001 lGI for vertex number 50101 of the outer mesh is 2.2442 lGI for vertex number 50201 of the outer mesh is 2.1459 lGI for vertex number 50301 of the outer mesh is 2.9416 lGI for vertex number 50401 of the outer mesh is 2.3684 lGI for vertex number 50501 of the outer mesh is 2.2782 lGI for vertex number 50601 of the outer mesh is 3.2919 lGI for vertex number 50701 of the outer mesh is 2.3364 lGI for vertex number 50801 of the outer mesh is 2.1706 lGI for vertex number 50901 of the outer mesh is 2.9397 lGI for vertex number 51001 of the outer mesh is 2.9073 lGI for vertex number 51101 of the outer mesh is 2.0799 lGI for vertex number 51201 of the outer mesh is 2.2192 lGI for vertex number 51301 of the outer mesh is 2.5582 lGI for vertex number 51401 of the outer mesh is 2.2923 lGI for vertex number 51501 of the outer mesh is 2.1661 lGI for vertex number 51601 of the outer mesh is 2.5648 lGI for vertex number 51701 of the outer mesh is 2.0458 lGI for vertex number 51801 of the outer mesh is 3.1605 lGI for vertex number 51901 of the outer mesh is 2.7371 lGI for vertex number 52001 of the outer mesh is 2.0855 lGI for vertex number 52101 of the outer mesh is 2.8338 lGI for vertex number 52201 of the outer mesh is 2.7917 lGI for vertex number 52301 of the outer mesh is 2.2648 lGI for vertex number 52401 of the outer mesh is 3.2209 lGI for vertex number 52501 of the outer mesh is 2.5312 lGI for vertex number 52601 of the outer mesh is 2.105 lGI for vertex number 52701 of the outer mesh is 3.0629 lGI for vertex number 52801 of the outer mesh is 3.1513 lGI for vertex number 52901 of the outer mesh is 2.1885 lGI for vertex number 53001 of the outer mesh is 2.0523 lGI for vertex number 53101 of the outer mesh is 3.0465 lGI for vertex number 53201 of the outer mesh is 2.1446 lGI for vertex number 53301 of the outer mesh is 1.944 lGI for vertex number 53401 of the outer mesh is 2.3653 lGI for vertex number 53501 of the outer mesh is 2.0911 lGI for vertex number 53601 of the outer mesh is 2.7689 lGI for vertex number 53701 of the outer mesh is 2.5602 lGI for vertex number 53801 of the outer mesh is 2.1541 lGI for vertex number 53901 of the outer mesh is 2.7298 lGI for vertex number 54001 of the outer mesh is 2.5223 lGI for vertex number 54101 of the outer mesh is 2.227 lGI for vertex number 54201 of the outer mesh is 3.1376 lGI for vertex number 54301 of the outer mesh is 2.5844 lGI for vertex number 54401 of the outer mesh is 2.5468 lGI for vertex number 54501 of the outer mesh is 3.0433 lGI for vertex number 54601 of the outer mesh is 2.3913 lGI for vertex number 54701 of the outer mesh is 2.2217 lGI for vertex number 54801 of the outer mesh is 2.7263 lGI for vertex number 54901 of the outer mesh is 2.3533 lGI for vertex number 55001 of the outer mesh is 2.39 lGI for vertex number 55101 of the outer mesh is 2.7456 lGI for vertex number 55201 of the outer mesh is 2.3226 lGI for vertex number 55301 of the outer mesh is 2.6686 lGI for vertex number 55401 of the outer mesh is 2.3396 lGI for vertex number 55501 of the outer mesh is 2.314 lGI for vertex number 55601 of the outer mesh is 2.5441 lGI for vertex number 55701 of the outer mesh is 2.4585 lGI for vertex number 55801 of the outer mesh is 2.2031 lGI for vertex number 55901 of the outer mesh is 2.8331 lGI for vertex number 56001 of the outer mesh is 2.5452 lGI for vertex number 56101 of the outer mesh is 2.2523 lGI for vertex number 56201 of the outer mesh is 2.5234 lGI for vertex number 56301 of the outer mesh is 2.2279 lGI for vertex number 56401 of the outer mesh is 2.5333 lGI for vertex number 56501 of the outer mesh is 2.4164 .. Almost finished .. now back-propagating values on the folded mesh .. average_lGI_over_the_hemisphere = 3.3787 DONE. deltaT = 910.9500 ================= mris_convert -c /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial/rh.pial_lgi.asc rh.pial rh.pial_lgi ================= ================= rm -Rf /data/shimony/shimony2/neonatal/freesurfer7_elabe_2yo/elabe_2yo_gdc_rdc_dn/MOD1707_Y2_a_fs7p2/surf/tmp-mris_compute_lgi-rh.pial ================= done. Start: Fri Jun 17 17:43:04 CDT 2022 End: Fri Jun 17 18:27:14 CDT 2022 Started at Fri Jun 17 16:59:29 CDT 2022 Ended at Fri Jun 17 18:27:14 CDT 2022 #@#%# recon-all-run-time-hours 1.462 recon-all -s MOD1707_Y2_a_fs7p2 finished without error at Fri Jun 17 18:27:14 CDT 2022