External Email - Use Caution
Hi all,
ANTSPATH needs to end with a trailing slash to use many ANTs utilities. So you'd do (for bash)
export ANTSPATH=/home/afrancis/Imaging/ANTs/
export PATH=${ANTSPATH}:$PATH
then try
antsRegistrationSyNQuick.sh
You can check version info with
antsRegistration --version
That should give you the last release version and a git hash that you can use to lookup exactly what commit you have - or if you have a release, it should just say so (eg v2.1.0).
However, the version info in ANTs < 2.4.0 did not get populated correctly for certain users, eg people who downloaded a ZIP file from Github rather than using git clone. So if you see version "0.0.0", it's probably because your ANTs was build from a source
zip or tarball. Also, apologies for the lack of binaries since v2.1.0. I've recently figured out how to build for more platforms with Github Actions, so the next patch release (will be 2.4.1) ought to come with binaries for Linux and Mac.
In the interests of not taking up too much space on the Freesurfer list with ANTs stuff, I'll just point to an example install script (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://github.com/cookpa/antsInstallExample) which should give
you all the files you need to submit an issue on the main ANTs page if you're having build problems (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://github.com/ANTsX/ANTs).
Thanks
From:
freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of King-Wai Chu <kingwai.chu@gmail.com>
Date: Monday, August 15, 2022 at 1:54 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [External] Re: [Freesurfer] Tracula - Preproc
External Email - Use Caution
Hi Alan,
First find out the version of ANTs you have by running the command below
antsRegistration --version
If it is below 2.1.0
download the 2.1.0 binaries here, it works for me.
If you want to use your script, edit the yellow lines to remove "#"
# If you want to build a particular release, do so here
# cd ANTs
# git checkout v2.3.1
# cd -
# If you want to build a particular release, do so here
cd ANTs
git checkout v2.3.1
cd -
you can also try v2.3.5 or v2.4.0.
I don't know if it will work or not because I don't write this script.
Best,
King-Wai
On Mon, Aug 15, 2022 at 1:15 PM Alan Francis <alandarkenergy@gmail.com> wrote: