#!/bin/tcsh
#PBS -M maryellen.koran@gmail.com
#PBS -m bae
#PBS -l walltime=24:00:00
setenv FREESURFER_HOME /usr/analysis/software/freesurfer_v.5.1.0
source $FREESURFER_HOME/SetUpFreeSurfer.csh
setenv SUBJECTS_DIR /projects/twells/Data/mekfreesurfer
cd /projects/twells/Data/mekfreesurfer/
#rm -r 206574
#mkdir 206575
cd /projects/twells/Data/
recon-all -i /projects/twells/Data/3T_MCI-AD/Raw/206575/DICOM/Thornton-Wells_206575_03_01_WIP_T1W_3D_TFE_SENSE.DCM -all -s 206575 -hippo-subfields