Please be sure to 'reply all' so everyone may participate.

Yes, You need to set the SUBJECTS_DIR before using freesurfer tools.

HTH
D

On Tue, Mar 4, 2014 at 2:02 PM, Mihaela Stefan <mikaelastephan@gmail.com> wrote:
> It says "No such file or directory"
> The environment for SUBJECTS_DIR was set as /usr/local/freesurfer/subjects
> but I have my working folder in a different location. Could that be the
> problem?
>
>
> On Tue, Mar 4, 2014 at 1:34 PM, dgw <dgwakeman@gmail.com> wrote:
>>
>> Are those subjects in your SUBJECTS_DIR?
>>
>> What is the output of
>> ls $SUBJECTS_DIR
>> ?
>>
>> On Tue, Mar 4, 2014 at 1:10 PM, Mihaela Stefan <mikaelastephan@gmail.com>
>> wrote:
>> > Hello,
>> > I am re-posting this since I haven't got an answer yet.
>> >
>> > Thanks!
>> > Mihaela
>> >
>> >
>> > On Fri, Feb 21, 2014 at 3:55 PM, Mihaela Stefan
>> > <mikaelastephan@gmail.com>
>> > wrote:
>> >>
>> >> Hi freesurfers,
>> >>
>> >> I get this error when I load qdec.table.dat. Is it something wrong or
>> >> should I ignore it?
>> >> Verifying subject data.sh: 1: Syntax error: Bad fd number
>> >> ERROR: QdecProject::VerifySubjects: Couldn't find subject '6027' in
>> >> SUBJECTS_DIR
>> >> .sh: 1: Syntax error: Bad fd number
>> >> ERROR: QdecProject::VerifySubjects: Couldn't find subject '6209' in
>> >> SUBJECTS_DIR
>> >> .sh: 1: Syntax error: Bad fd number
>> >> ERROR: QdecProject::VerifySubjects: Couldn't find subject '6243' in
>> >> SUBJECTS_DIR
>> >> .
>> >> .
>> >> .
>> >> ERROR: QdecProject::VerifySubjects: Couldn't find subject '6052' in
>> >> SUBJECTS_DIR
>> >> Too many subjects not found!
>> >>
>> >>
>> >> Someone else complained about the same problem but there was no reply:
>> >>
>> >> http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg08288.html
>> >>
>> >> My qdec.table looks like this:
>> >> fsid diagnosis Cage
>> >> 6027 ABN -1.39
>> >> 6209 ABN 2.61
>> >> .
>> >> .
>> >>
>> >> Thanks!
>> >> Mihaela
>> >>
>> >
>> >
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