Can you upload the y.mgh file and fsgd file so that I can try to replicate it? What platform are you running on and what version of FS?
doug
On 04/02/2014 06:34 PM, Tudor Popescu wrote:
Hi Doug
Sorry, again I wasn't sure whether you'd noticed my reply amonst the latest list messages. Hopefully there is a fix for this error.
Thanks
Tudor
On 2 April 2014 12:33, Tudor Popescu <tudor3@gmail.com <mailto:tudor3@gmail.com>> wrote:
Your mri_glmfit-sim command line is not correct and
does not match
examples in the help. Basically you need to spec
"--cache 1.3 abs"
not "--cache 1.3 --sim-sign abs"
Thanks Doug, now it worked, however I'm getting this
error, which several other people seem to get: "Computing
spatial average of each frame
0 1 2*** glibc detected *** mri_segstats: malloc():
memory corruption: 0x2e8df328 ***". I am running FS 5.3.0
through VirtualBox, 2GB ram allocated.
What is your full command line? Sometimes this happens when
setting the cwp to 1 (or close to 1).
My command was
mri_glmfit-sim --glmdir
/media/math/all38subj/qdec/A2SepGroup_C_DODS_lgi_lh --cache 1.3 abs
therefore I did not change the --cwpvalthresh input argument,
meaning cwp presumably stayed at its default of .05.
Terminal output is attached.
What else can I try to make this command work?
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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