On Mon, Sep 17, 2012 at 9:40 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

that is a pretty big defect (vertices=27939). Can you check the ?h.orig.nofix and see if anything is dramatically wrong with it? Is the skull attached? The cerebellum? If you upload it we can certainly take a look

cheers
Bruce

On Mon, 17 Sep 2012, Blessy M wrote:

Does anyone have any suggestions on what might have gone wrong here? Should
I send the image?

On Fri, Sep 14, 2012 at 3:14 PM, Blessy M <blessam@gmail.com> wrote:
No, the cerebellum is not attached.

On Fri, Sep 14, 2012 at 1:42 PM, Blessy M <blessam@gmail.com>
wrote:
I have a MPRAGE scan, with slight atrophy on right
side of brain. Recon-all is crashing (see error
below). Can anyone help me with this, so I can get a
reasonably parcellated brain?

CORRECTING DEFECT 6 (vertices=151, convex hull=90)
After retessellation of defect 6, euler #=-52
(54998,159712,104662) : difference with theory (-57)
= -5

CORRECTING DEFECT 7 (vertices=27939, convex
hull=5437)
normal vector of length zero at vertex 60965 with 0
faces
vertex 60965 has 0 face
Numerical result out of range
Linux compute-0-4.local 2.6.18-194.17.4.el5 #1 SMP
Mon Oct 25 15:50:53 EDT 2010 x86_64 x86_64 x86_64
GNU/Linux

recon-all -s . exited with ERRORS at Sat Sep 1
02:01:53 EDT 2012

thanks

Blessy

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