Hi Freesurfer developers,

I have executed the recon-all command using the T1 images but I would be interested in doing a reconstruction of the hippocampal subregions using for that purpose a higher resolution images (eg T2 or FLAIR) as input. I read here https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields that is possible make hippocampal segmentation using the T2 images, but if T2 images cannot be used as input to execute the recon-all in consecuence I can´t do the segmentation of hippocampal subfields or on the contrary the recon-all and the hippocampal subfields segmentation are two operations that can be executed independently ?


I hope to have explained myself correctly

Thanks in advance.

Cheers

2018-05-03 18:28 GMT+02:00 Douglas N. Greve <dgreve@mgh.harvard.edu>:

No, not currently


On 05/03/2018 11:26 AM, M Janani wrote:
>
> Hi Team,
>
>                I have one doubt. Can I input T2 weighted images for
> recon-all command?
>
> Regards,
>
> Janani
>
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