Hi David - This log only shows output from the -path step and not from the -prep step. The file that's missing should be created during the -prep step, so there's no way to figure out what went wrong without seeing the output from the pre-processing.

Please cc the freesurfer list on your reply.

Thank you,
a.y


On Sat, 16 Nov 2013, David Soto wrote:

Thanks, please see attachedI only noticed this 

ERROR: Could not open/home/dsoto/Documents/fmri/rsdtianawmgui/14AB/dlabel/diff/rh.ilf_AS_avg33_m
ni_bbr_cpts_5_std.txt
cheers
DS


On Fri, Nov 15, 2013 at 8:55 PM, Anastasia Yendiki
<ayendiki@nmr.mgh.harvard.edu> wrote:

      Hi David - Can you please send us the trac-all.log file for this
      subject?
      Without seeing where it stopped and what error messages there
      are it's
      hard to guess what's going on.

      Thanks,
      a.y

      On Fri, 15 Nov 2013, David Soto wrote:

      >  Hi -  
      > trac-all completed in all my Ps except one
      > and I noticed that the  dlabel/diff output does not contain
      all the files
      >
      > I assessed whether it could be do to poor registration, by
      checking
      > the  aparc+aseg
      > file and looks allright
      >
      > I also checked the registration of FA maps to standard space
      by 
      > freeview -v $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz
      > dtifit_FA.bbr.nii.gz 
      > and seems fine
      >
      > also
      >
      > freeview -v brain_anat_orig.nii.gz lowb_brain.nii.gz 
      >
      > which also seems fine
      >
      > any ideas pls?
      >
      > thanks!
      >
      > ds
      >
      >
      >
      > On Fri, Aug 16, 2013 at 5:14 PM, Anastasia Yendiki
      > <ayendiki@nmr.mgh.harvard.edu> wrote:
      >        
      >       I suspect the current problem is caused by poor
      registration.
      >       Have you checked the aparc+aseg and/or the registration
      from
      >       diffusion to anatomical and from anatomical to MNI?
      >
      >       On Fri, 16 Aug 2013, David Soto wrote: 
      >
      >
      >
      > --
      > http://www1.imperial.ac.uk/medicine/people/d.soto/
      >
      >
      >  
      >
      >


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