Hi list,

I have read the article on EC (Neuroimage).

But, I do not understand how I should obtain the EC thickness outcomes /statistical maps from my analysis.

I have some question, please.

I have already performed recon-all and cortical thickness analysis.

For entorhinal cortex thickness analysis, should I run again mris_prep, surf2surf and glmfit for EC files only? If yes, which are the files that should I use? Which are their names and where these files are locate?

An additional question on other matter, please.

If I'd like perfomed a ROI based cortical thickness (for example on occipital lobe), can I use a mask that is builded by recon-all? How can I extract it for example from aseg (do you advise it)?

About the occipital lobe, I do not understand from tutorial if already exist a particular modality to calculate the cortical thickness specifically in that region.

Thank you very much for your patience and kindness,

Stefano