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Dear Freesurfer team,

 

Thank you so much for your support for this software thus far.

 

As we were considering using the module for segmentation of hippocampal subfields and nuclei of the amygdala (cross-sectional and longitudinal), we came across an interesting scenario:

Due to certain conditions for some subjects we seek to analyze, we would like to only run this module of freesurfer on one hemisphere.

I understand that recon -all has this option (-hemi ?h) but found that there was no documentation regarding single hemisphere segmentation of the Hippocampus / Amygdala.

 

Could you let us know if there are any hidden options that enable single hemisphere processing or workflows that allow for this?

 

Thank you so much for your help as always.

 

Sincerely,

James Park

 



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