It probably thinks the STL file is just a mesh without coloring.

Peace,

Matt.

From: Mat yuki <matsuyuki2014@outlook.jp>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, July 10, 2014 at 7:19 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Convert label file to STL file‏

Dear Freesurfer Experts,
 
I'm trying to convert .label file to .stl file.
In more detail of my purpose, I want to get separate stl files of whole brain.
Now, I want to make stl files of label files which made from ?h.aparc.a2009s.annot.
 
First, I tried to convert lh.pial to lh.pial.stl, I've got it (this was just check how mris_convert works).
Second, I copied lh. white file from surf dir into label dir. Then, I runed next command:
 
cd <subjid>/label
mris_convert --label lh.bankssts.label bankssts lh.white lh.bankssts.label.stl
 
And got the error message: ERROR: unknown file annot file type specified for output: lh.bankssts.label.stl
 
Do you know what could have gone wrong?

Thank you,
Yuki.
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