/media/sf_cdh_ventrikel/test_002/mri
/usr/local/freesurfer/bin/mri_nu_correct.mni
--n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
nIters 1
$Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux
Tue Feb  9 09:44:44 EST 2016
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13
tmpdir is ./tmp.mri_nu_correct.mni.3493
/media/sf_cdh_ventrikel/test_002/mri
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3493/nu0.mnc -odt float
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3493/nu0.mnc -odt float 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from orig.mgz...
TR=1620.00, TE=2.67, TI=900.00, flip angle=9.00
i_ras = (-1, -2.23517e-08, 1.86265e-08)
j_ras = (-7.45058e-08, 6.28643e-09, -1)
k_ras = (-2.98023e-08, 1, 2.09548e-09)
changing data type from uchar to float (noscale = 0)...
writing to ./tmp.mri_nu_correct.mni.3493/nu0.mnc...
 
--------------------------------------------------------
Iteration 1 Tue Feb  9 09:44:47 EST 2016
nu_correct -clobber ./tmp.mri_nu_correct.mni.3493/nu0.mnc ./tmp.mri_nu_correct.mni.3493/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3493/0/ -iterations 1000 -distance 50
[fsuser@xubuntu-VirtualBox:/media/sf_cdh_ventrikel/test_002/mri/] [2016-02-09 09:44:47] running:
  /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3493/0/ ./tmp.mri_nu_correct.mni.3493/nu0.mnc ./tmp.mri_nu_correct.mni.3493/nu1.imp

Assertion failed at line 827 in file templates/CachedArray.cc
nu_estimate_np_and_em: crashed while running volume_stats (termination status=256)
nu_correct: crashed while running nu_estimate_np_and_em (termination status=256)
 
 
 
ERROR: file ./tmp.mri_nu_correct.mni.3493/nu1.mnc does not exist!