Does that file exist? If not, have you run the amygdalar nuclei segmentation?

On 3/30/2021 3:00 PM, atacan zeybek wrote:

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Hello FreeSurfer Developers,

I'm attempting to create a text file of amygdalar nuclei of given subjects. I use this command:

asegstats2table --subjects 8070 8071 8077 --statsfile=amygdalar-nuclei.lh.T1.v21.stats --tablefile=amygdalarnuclei.lh.T1.v21.txt –skip

And get an error like this:

ERROR: Cannot find stats file /home/atacan/Desktop/freesurfer/subjects/8070/stats/amygdalar-nuclei.lh.T1.v21.stats

Unfortunately I can't search the mail archives because I get an another error while loading the page.

Freesurfer version: CentOS 7 x86_64 (64b) tar archive

Platform: Ubuntu 20.04.2 LTS
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