I think I fixed this in 7.2. Can you try that?

On 9/3/2021 12:11 PM, ChristianBauer wrote:

        External Email - Use Caution        

Hello freesurfer help team!

I am using the command reg-feat2anat but I get the error message:

tkregister2_cmdl_cmdl: Command not found.



Here is my full command

Fri Sep  3 17:56:20 CEST 2021
/Users/christianbauer/Desktop/Imogen2bids_copy/freesurfer/my_subjects
/Applications/freesurfer/7.1.1/bin/reg-feat2anat
--feat /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat --subject 032
Darwin Christians-MacBook-Pro.local 19.6.0 Darwin Kernel Version 19.6.0: Tue Jun 22 19:49:55 PDT 2021; root:xnu-6153.141.35~1/RELEASE_X86_64 x86_64
example_func ras_good_flag 1
-------------------------------------------------------
Initializing exf2anat with header
tkregister2_cmdl_cmdl --targ /Users/christianbauer/Desktop/Imogen2bids_copy/freesurfer/my_subjects/032/mri/brainmask.mgz --mov /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/example_func.nii.gz --reg /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/reg/freesurfer/anat2exf.register.dat.init --fslregout /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/reg/freesurfer/exf2anat.init.fsl.mat --regheader --noedit
tkregister2_cmdl_cmdl: Command not found.


Many thanks,

Christian

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer