The command exited with error. Attached the log file.

Additionally, this message shows up in the terminal output:

ERROR: cannot find Matlab 2012b runtime in location:

     

/Applications/freesurfer/MCRv80

     

It is looking for either: 

  bin/glnxa64/libdctprocess.so    (Linux 64b) or

  bin/maci64/libdctprocess.jnilib (Mac 64b)

 

You will need to download the Matlab Compiler Runtime (MCR) for Matlab 2012b.

To do so, please run the following commands (you might need root permissions):

 

LINUX:

 

cd /Applications/freesurfer

curl "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2012bLinux.tar.gz" -o "runtime2012b.tar.gz"

tar xvf runtime2012b.tar.gz

 

MAC:

 

cd /Applications/freesurfer

curl "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2012bMAC.tar.gz" -o "runtime2012b.tar.gz"

tar xvf runtime2012b.tar.gz

 

2.) Did the recon-all run everything just without hippocampal subfields and brainstem? If yes, can I just re-run these two commands or do I need to re-run everything?

Many thanks for the support!

/Ben