First, check the overall registration with
tkregisterfv --mov lowb.nii.gz --reg register.lta



On 8/14/2020 12:30 PM, 侠义江湖,醉笑人生 wrote:

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 Hi, freesurfer experts.
I am running dt_recon and mri_vol2vol to obtain FA values of ROI.  Everything is OK after running the dt_recon command. But some subjects in my study show an issue with mri_vol2vol registration. 
When checking the wmparc2diff.mgz I created, it is apparent tha​t surfaces of lh.white and rh.white are not mismatched with the wmparc2diff.mgz. This issue is also mentioned by another user. The Web link is 
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg55788.html Could you give me some advice?
Thanks.
He Tao​

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