Sorry for posting this again...but I have been trying this all the day and nothing seems to change the situation.
I am having problems with my FS installation. I am working with Linux/Ubuntu version 11.10...I have followed the indications of the FS wiki and it seems that it is installed but it does not work...it does not run in the terminal and I do not know why and how can I do:
freesurferrosi@rosi-HP-Pavilion-dv9700-Notebook-PC:~/FREE_SURFER/freesurfer$ export FREESURFER_HOME=/home/rosi/FREE_SURFER/freesurfer
rosi@rosi-HP-Pavilion-dv9700-Notebook-PC:~/FREE_SURFER/freesurfer$ . $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-Linux-centos4-stable-pub-v5.1.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /home/rosi/FREE_SURFER/freesurfer
FSFAST_HOME /home/rosi/FREE_SURFER/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /home/rosi/FREE_SURFER/freesurfer/subjects
MNI_DIR /home/rosi/FREE_SURFER/freesurfer/mni
FSL_DIR /usr/share/fsl/4.1
rosi@rosi-HP-Pavilion-dv9700-Notebook-PC:~/FREE_SURFER/freesurfer$ freesurfer
FreeSurfer is a set of tools for analysis and visualization
of structural and functional brain imaging data. FreeSurfer
also refers to the structural imaging stream within the
FreeSurfer suite.
Users should consult the online documentation available at:
https://surfer.nmr.mgh.harvard.edu
Alternatively, the 'recon-all' command help-text provides
adequate information to begin processing subject data, such
as the sample subject 'bert' found in the 'freesurfer/subjects'
directory. Type 'recon-all --help' to view this help-text.
Direct comments and questions to:
freesurfer@nmr.mgh.harvard.eduYou are running this version of FreeSurfer:
freesurfer-Linux-centos4-stable-pub-v5.1.0
rosi@rosi-HP-Pavilion-dv9700-
Notebook-PC:~/FREE_SURFER/freesurfer$
How can I call FreeSurfer??
Thanks in advance,
Rosalia.