Just an update!

FS 5.3 gives me the same error even when running -per-run.

Using FS 5.1, the same error pops up only in -per-session and -per-run works fine.

Thank you in advance.

From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Sepide Movaghati [sepide.movaghati@mail.mcgill.ca]
Sent: Monday, August 12, 2013 11:31 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Error when using preproc-sess -per-session in FS-5.3

Hello,

I am using freesurfer 5.3 and try to run:

preproc-sess -s session1 -surface self lhrh -fsd bold -mni305 -fwhm 5 -per-session

it gives me an error:

1/1 session1

1/1 session1 003 lh ---------

Mon Aug 12 11:21:09 EDT 2013

ERROR: could not determine file for /export01/data/sepid/subjects/ZY/session1/bold/003/fmcpr

however, it works fine when I use -per-run.

I have attached complete terminal output.

Thanks.