I don't understand what you mean by "join". Can you elaborate?

On 8/4/2021 1:16 AM, Ammar Shujaa wrote:

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Hello FreeSurfur Developers,

I have used binary mask and got the segmentations: right and left-hypocampus.mgz.

I just want to know how to join these segmentations with T1.mgz so that I can get one file containing T1 image with the two segmentations. I also want to save the T1 image with the the segmentions in nifti format.

Thanks in advance.

Ammar

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