Hello Bruce,

Thank you for the quick reply. I performed recon-all on about 140 subjects and my PhD supervisor wanted to know if there was a way to detect black holes. Any way that I could get access to the tools you mentioned?

I am a recent medical school graduate with Master's and undergraduate degrees in computer science. I could help out with documenting/distributing once I get a handle on how those tools work (as thanks :) ).

Regards,

Timothy

On Sat, Mar 25, 2017 at 8:05 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Timothy

we do label WM and non-WM hypointensities. Typically they are a lot more apparent on a T2 or FLAIR though (and we have some tools to do this, although they aren't really documented/distributed yet)

cheers
Bruce

On Sat, 25 Mar 2017, Timothy M wrote:

Hello,
I cannot seem to find any documentation regarding detection of "black holes"
on T1WI (e.g., in patients with multiple sclerosis). Does FreeSurfer
provide this functionality? If so, is there any documentation on the
subject?

Thank you,
Timothy

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.