Do you have permissions to the file? If so, rerun recon-all with -debug as the first option, then send the terminal output to the list.
doug
ps. Please send emails to the list and not to us individually. thanks!

On 7/25/13 2:31 PM, Kyllo, Hannah M wrote:

yes

- Hannah Kyllo
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas Greve [greve@nmr.mgh.harvard.edu]
Sent: Thursday, July 25, 2013 11:46 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] bug reporting
Does subj001.nii.gz exist in the folder you ran recon-all from?

On 7/25/13 12:21 PM, Kyllo, Hannah M wrote:
Hello,

I've received the following error using Ubuntu 13.04:

"WARNING: tcsh v6.17.06 has an exit code bug! Please update tcsh!

ERROR: cannot find subj001.nii.gz
Linux neuron 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s exited with ERRORS at Thu Jul 25 11:15:50 CDT 2013"

thanks in advance for your input,

- Hannah Kyllo

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