Hi,
I am a relatively new user of Freesurfer and have a couple questions. I have gone through the tutorials and I am now at the point where I check the segmentation.
If I open my subject in tkemdit (tkmedit your_subject_name brainmask.mgz -surfs -aseg) and use the edit the segmentation and then press "save segmentation", I am editing the aseg.mgz file, correct? After doing that, what parts of recon-all would I need to run again?
Thanks,
Maria
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Maria Jalbrzikowski, M.A.
University of California, Los Angeles