Yes it is taken at 3T. I have asked our team to provide these information about the MRIs and will let you know when I hear back. I also wanted to ask if you know a good way to refine the thalamus and fill out the missing parts within the volume?

Thank you 
Dorsa

On Tue, Jul 19, 2016 at 5:10 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
what is a "3TS" image? Do you mean it was acquired at 3T? What sequence
and what parameters (TE/TR/TI/TD/flip angle)?

cheers
Bruce
On Tue, 19 Jul 2016, Dorsa
Haji Ghaffari wrote:

> Hi Bruce,
> that is a 3TS T1 weighted image and is taken after the patients have taken
> the contrast medium. I have played with the intensities in Analyze and this
> is the best I could get. Do you have any suggestions for getting better
> contrast?
>
> Thank you
>
> Dorsa
>
> On Tue, Jul 19, 2016 at 4:29 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> wrote:
>       also, please post to the list so that others can answer!
>       thanks
>       Bruce
>       On Tue, 19 Jul 2016, Dorsa Haji Ghaffari wrote:
>
>             Here it is. Also can you explain why the algorithm
>             works best with 1mm^3
>             voxel size?
>
>             Thank you!
>
>
>
>
>
>
>
>
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