On Sat, Dec 1, 2012 at 11:52 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

can you check to see how much you actually have free? You are definitely running out of memory, so something else is using it. What is your hardware/software environment?

On Sat, 1 Dec 2012, Negar Memarian wrote:

No, I tried running just one recon and I only have one xterm window open.
Anything I can do to fix this?

On Sat, Dec 1, 2012 at 11:11 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
6G should be plenty. Do you have anything else running? Maybe
another recon at the same time?
On Fri, 30 Nov 2012, Negar Memarian wrote:

Hi Bruce,
I have 8 GB ram and have assigned 6GB of it to
FreeSurfer. Shall I increase
it to 8? Would that be enough or still too low?

Thank you,
Negar

On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl
<fischl@nmr.mgh.harvard.edu>
wrote:
Look like it is running out of memory. How
much ram do you have
on that machine?
Bruce

On Nov 30, 2012, at 9:29 PM, Negar Memarian
<negar.memarian@utoronto.ca> wrote:

> Hello,
>
> I ran recon-all -all on my subject. The
process ended after
several minutes with this message at the end:
> recon-all -s 350_FS exited with ERRORS at
Fri Nov 30 17:57:59
PST 2012
>
> I tried loading the pial and white surfaces
for editing using
this command:
> tkmedit 350_FS brainmask.mgz rh.white
-aux-surface lh.white
>
> but looks like these surfaces do not exist
(since the
recon-all exited prematurely). When I check
the recon-all.log
file I do not see any errors except a few
MCSRCH errors. So I
cannot understand what exactly went wrong in
the recon-all. I've
attached the recon-all log file. Can someone
please tell me what
the problem is and how I can fix it?
>
> Many thanks,
> Negar
> p.s. I tried on more than one subject and I
still face the
same issue.
>
>
> Negar Memarian, MASc, PhD
> NSERC Postdoctoral Fellow
> Department of Neurology
> David Geffen School of Medicine at UCLA
>
> <recon-all.log>
>
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