Have you looked at your images to confirm that there is nothing really wrong? Look at orig.mgz, brain.mgz, and aseg.auto_noCCseg.mgz

On 1/21/2020 11:02 AM, Desel, Tenzin wrote:
Hello FreeSurfer Developers,

I'm attempting to run recon-all after unpacking data. It is exiting with errors - mri_cc: no WM voxels found with norm > 40 -- check skull stripping
 
 I've attached the recon-all.log in case it's of any use.

1) FreeSurfer version: freesurfer-Linux-centos7_x86_64-stable-v6-20161229-80ac5eb
2) Platform: centos7_x86_64
3) uname -a: Linux lemmiwinks.nmr.mgh.harvard.edu 3.10.0-1062.4.3.el7.x86_64 #1 SMP Wed Nov 13 23:58:53 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

Thank you!








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