OctavianThank you for your help.I mention this is not the only subject where I have this problem.Dear Bruce,I just transferred subject r02.tar.gz.Again, wm.mgz edits (all deleted voxels, no additions) are not incorporated on reruns using any of therecon-all -autorecon-wm -aitorecon3recon-all -autorecon2 -autorecon3recon-all -make all
For example, the complete command line for a rerun on this particular subject is
recon-all -autorecon2-wm -autorecon3 -3T -bigventricles -cw256 -subjid r02 -parallel > output.txt &Here are some of the edited voxels which are not excluded from the wm on rerun:
-40.14, -2.67, 116.29 coronal slice 13212.73, -23.67, 126.16 coronal slice 17114.05, 12.33, 11.61 coronal slice 147