External Email - Use Caution        

OK - fill out the form on this page and download the license.txt file,

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/registration.html

You can copy license.txt to your home directory, e.g., if it’s in your Downloads folder from downloading via the browser,

$ cp $HOME/Downloads/license.txt  $HOME/.

Then you can set the environment variable FS_LICENSE to it’s location,

$ export FS_LICENSE=$HOME/license.txt

… check it is readable …

$ cat $FS_LICENSE

You can put the license.txt anywhere just as long as FS_LICENSE is set to point to it.

Then try your commands again.

- R.

On Sep 26, 2021, at 14:10, Banik, Rana <rana.banik@vanderbilt.edu> wrote:

        External Email - Use Caution        
        External Email - Use Caution        
I installed freesurfer here: 

banikr2@banikr:~$ which freesurfer 
/usr/local/freesurfer/bin/freesurfer

I am getting the following error while running recon-all:
banikr2@banikr:~$ export SUBJECT_DIR=/home/banikr2/273_p
banikr2@banikr:~$ recon-all -s sub273 -i 273_p/273_MR.nii
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied
cp: cannot create regular file '/usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt': No such file or directory
cat: /usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt: No such file or directory
INFO: FreeSurfer build stamps do not match
Subject Stamp: 
Current Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551

which I performed accordingly. 

Any suggestions?

Rana Banik
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