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you mean you want to map the aparc+aseg.mgz from the subject space to the cvs/mni152 space using the cvs transform? Try this
mri_convert aparc+aseg.mgz -at cvs.m3z aparc+aseg.from-subject-to-cvs.mgz
where cvs.m3z is the cvs nonlinear registratiopn

On 4/21/2023 11:12 AM, Carlos Alcocer wrote:

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I registered a subject to mni space using the mri_cvs_register command with the --mni flag. However, the output files do not include a new aparc.a2009s+aseg.mgz. I wanted this atlas overlayed on the mni registered subject so I could extract one of the labels. Is this possible?

Thanks,

Carlos
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