Hi Padma,

It looks like tcsh isn't installed.  Can you try installing it by running 

```

sudo apt update
sudo apt install tcsh

```

-Paul

---

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of priya padma <priya@phenomx.ai>
Sent: Wednesday, October 12, 2022 3:16 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Running recon-all in parallel

 

        External Email - Use Caution        

Hello team,

As freesurfer takes lot of time for processing one subject, I was searching on how to run recon-all for multiple subjects in parallel and I found the following in Andy's brain book doc

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FS_ShortCourse/FS_04_ReconAllParallel.html

and ran 

$ ls *.nii | parallel --jobs 8 recon-all -s {.} -i {} -all -qcache

and I get the error "/usr/bin/bash: /home/***/***/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory "

I believe that this is not the right command for linux, ubuntu 20 OS but I am not sure.

Could anyone help me with this?

Thank you

--

Best Regards

Padma Priya

AI Developer 

PhenoMx, Inc.

priya@phenomx.ai | (+82)10-5405-2685

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