some times the compression/decompression routines will store intermediate files in /tmp or /scratch or somewhere else. If its target location fills up, then you can get errors, so check the disk space in those locations


On 10/24/17 9:34 AM, Iglesias Gonzalez, Eugenio wrote:

Wow never seen that before. Does the output look OK? (segmentation and volumes)

Cheers,

/Eugenio

 

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

 

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Maksimovskiy, Arkadiy" <AMAKSIMOVSKIY@mclean.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 24 October 2017 at 14:31
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA znzread failed error

 

Dear Hipp. Segmentation experts,

 

I keep getting the following error when running the segmentHA script from the Dev. Version. Wondering if this is serious or something that can be ignored, as the process keeps running to the end:

 

Transforming points

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

threshold mask volume at 0.5

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

No such file or directory

threshold mask volume at 0.5

znzreadInt: znzread failed

No such file or directory

znzreadInt: znzread failed

 

 

Thank  you for your help,

Arkadiy

 

-- 

Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow
McLean Imaging Center, McLean Hospital
Department of Psychiatry, Harvard Medical School



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