From: Linda Eva Heidinger
Sent: Wednesday, July 19, 2017 1:31 PM
To: Greve@nmr.mgh.harvard.edu
Subject: reducing a matrix

Hello Douglas,

Thank you for your comments. However, I am wondering since it says that --gcam is an unknown option when I run it with mri_vol2vol, where I can find this option in the literature and if the command needs more -flags or not. I really appreciate your help but I need your command to run.

Below is my command.

mri_vol2vol --gcam run_003regraijNIFTI.nii boldregister003.dat $SUBJECTS_DIR/$subject/cvs/final_CVSmorph_tocvs_avg35_inMNI152.m3z $FREESURFER_HOME/subjects/cvs_avg35_inMNI152/mri.2mm/register.lta 0 subject003matrix.nii.gz

Thanks,

-Linda