Im not sure I understand the question because I have not successfully registered the hippoSfLabels file to mni space. I can load the hippoSfLabels.mgz file into CONN at the subject level, but I have two problems. 1^st it is not in MNI space. 2^nd it is the whole hippocampus and I want to be able to use masks of the individual subfields. To try and convert the hippoSfLabels file to MNI space though I used the following.

 

mri_vol2vol --mov lh.hippoSfLabels-T1-T2.v10.mgz \

--targ $FREESURFER_HOME/average/mni305.cor.mgz \

--xfm transforms/talairach.xfm  \

--o test.mgz

 

Eric