Hello Developers!

I am getting the same error in several patients (not all). The common error between all of them is this line

Waiting for PID 2778 of (2778 2781) to complete...
/usr/local/freesurfer/bin/reconbatchjobs: line 81: 2778 Segmentation fault (core dumped) exec $JOB >> $LOG 2>&1
Waiting for PID 2781 of (2778 2781) to complete...

Any idea?

Thanks in advance!

Emanuel

On Tue, Oct 1, 2019 at 5:07 PM Emanuel Alvaredo <ealvaredo@gmail.com> wrote:

Hello FreeSurfer Developers,

I am running de following command

/usr/local/freesurfer/subjects/SOME_SUBJECT
/usr/local/freesurfer/bin/recon-all
-s SOME_SUBJECT -i /fleni/patients/KING_LUCAS_JAVIER_25-09-2019/2_COGNITIVO_FLENI/4_Accelerated_Ax_IR-FSPGR/i2750291.MRDC.58 -
all -parallel


I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use. 
I have checked the log but I dont find de cause. 

1) FreeSurfer version:freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
2) Platform:Intel(R) Core(TM) i9-9900K CPU @ 3.60GHz
3) uname -a: Linux fisicos-ub2 5.0.0-29-generic #31~18.04.1-Ubuntu SMP Thu Sep 12 18:29:21 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

Thanks in advance

Emanuel