On Aug 27, 2021, at 16:14, Erik O'Hanlon <OHANLOER@tcd.ie> wrote:

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Dear FS experts,

I've run a lognitudinal hippocampal and amygdala analysis. I jave managed to extract the amygdala and the head body tail subfields bui I'm wondering how to extract the regular FS60 volume measures? I have the three versions (FS60, HBT and CA mgz files in my long mri directories but I just keep getting the HBT volumes. 

I tried 

quantifyHAsubregions.sh hippoSf T1.long Outputfilename 

and that gives me the HBT measures 

What command do I use to pull out the FS60 subfield measures from my long mri directories?

Thanks for any help.   

Erik

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